/// <summary>
/// Recalculates the group lengths for all groups in the <paramref name="dataset"/>. Removes any group lengths for groups with out elements.
/// </summary>
/// <remarks>For most use cases, this method will be called by the library as needed and will not need to be called by the user.</remarks>
/// <param name="dataset">DICOM dataset</param>
/// <param name="createIfMissing">If set to <c>true</c>, group length elements will be created if missing. If set to <c>false</c>, only groups with existing group lengths will be recalculated.</param>
public static void RecalculateGroupLengths(this DicomDataset dataset, bool createIfMissing = true) {
// recalculate group lengths for sequences first
foreach (var sq in dataset.Where(x => x.ValueRepresentation == DicomVR.SQ).Cast<DicomSequence>()) {
foreach (var item in sq.Items) {
item.RecalculateGroupLengths(createIfMissing);
}
}
var calculator = new DicomWriteLengthCalculator(dataset.InternalTransferSyntax, DicomWriteOptions.Default);
IEnumerable<ushort> groups = null;
if (createIfMissing)
groups = dataset.Select(x => x.Tag.Group).Distinct();
else
groups = dataset.Where(x => x.Tag.Element == 0x0000).Select(x => x.Tag.Group);
foreach (var group in groups.ToList()) {
var items = dataset.EnumerateGroup(group).ToList();
if (items.Count == 0) {
// no items exist for the specified group; remove
dataset.Remove(new DicomTag(group, 0x0000));
return;
}
uint length = calculator.Calculate(items);
dataset.Add(new DicomTag(group, 0x0000), length);
}
}
public bool OnBeginSequenceItem(DicomDataset dataset) {
uint length = UndefinedLength;
if (_options.ExplicitLengthSequenceItems) {
DicomWriteLengthCalculator calc = new DicomWriteLengthCalculator(_syntax, _options);
length = calc.Calculate(dataset);
}
WriteTagHeader(DicomTag.Item, DicomVR.NONE, length);
return true;
}
/// <summary>
/// Handler for traversing beginning of sequence item.
/// </summary>
/// <param name="dataset">Item dataset.</param>
/// <returns>true if traversing completed without issues, false otherwise.</returns>
/// <remarks>On false return value, the method will invoke the callback method passed in <see cref="IDicomDatasetWalker.OnBeginWalk"/> before returning.</remarks>
public bool OnBeginSequenceItem(DicomDataset dataset)
{
uint length = UndefinedLength;
if (_options.ExplicitLengthSequenceItems)
{
DicomWriteLengthCalculator calc = new DicomWriteLengthCalculator(_syntax, _options);
length = calc.Calculate(dataset);
}
WriteTagHeader(DicomTag.Item, DicomVR.NONE, length);
return(true);
}
public bool OnBeginSequence(DicomSequence sequence) {
uint length = UndefinedLength;
if (_options.ExplicitLengthSequences || sequence.Tag.IsPrivate) {
DicomWriteLengthCalculator calc = new DicomWriteLengthCalculator(_syntax, _options);
length = calc.Calculate(sequence);
}
_sequences.Push(sequence);
WriteTagHeader(sequence.Tag, DicomVR.SQ, length);
return true;
}
/// <summary>
/// Recalculates the group length element for the specified group. Removes the group length element if no elements exist for the specified group.
/// </summary>
/// <remarks>For most use cases, this method will be called by the library as needed and will not need to be called by the user.</remarks>
/// <param name="dataset">DICOM dataset</param>
/// <param name="group">DICOM tag group</param>
/// <param name="createIfMissing">If set to <c>true</c>, the group length element will be created if missing. If set to <c>false</c>, the group length will only be calculated if the group length element exists.</param>
public static void RecalculateGroupLength(this DicomDataset dataset, ushort group, bool createIfMissing = true) {
var items = dataset.EnumerateGroup(group).ToList();
if (items.Count == 0) {
// no items exist for the specified group; remove
dataset.Remove(new DicomTag(group, 0x0000));
return;
}
var calculator = new DicomWriteLengthCalculator(dataset.InternalTransferSyntax, DicomWriteOptions.Default);
uint length = calculator.Calculate(items);
dataset.Add(new DicomTag(group, 0x0000), length);
}
protected override void OnSave() {
if (RootDirectoryRecord == null)
throw new InvalidOperationException("No DICOM files added, cannot save DICOM directory");
_directoryRecordSequence.Items.Clear();
var calculator = new DicomWriteLengthCalculator(FileMetaInfo.TransferSyntax, DicomWriteOptions.Default);
// ensure write length calculator does not include end of sequence item
//Dataset.Remove(DicomTag.DirectoryRecordSequence);
//_fileOffset = 128 + calculator.Calculate(FileMetaInfo) + calculator.Calculate(Dataset);
//Add the offset for the Directory Record sequence tag itself
//_fileOffset += 4;//sequence element tag
if (FileMetaInfo.TransferSyntax.IsExplicitVR)
{
_fileOffset = 128 + calculator.Calculate(FileMetaInfo) + calculator.Calculate(Dataset);
_fileOffset += 2; // vr
_fileOffset += 2; // padding
_fileOffset += 4; // length
}
else
{
_fileOffset = 128 + 4 + calculator.Calculate(FileMetaInfo) + calculator.Calculate(Dataset);
_fileOffset += 4;//sequence element tag
_fileOffset += 4; //length
}
AddDirectoryRecordsToSequenceItem(RootDirectoryRecord);
if (RootDirectoryRecord != null) {
CalculateOffsets(calculator);
SetOffsets(RootDirectoryRecord);
Dataset.Add<uint>(DicomTag.OffsetOfTheFirstDirectoryRecordOfTheRootDirectoryEntity, RootDirectoryRecord.Offset);
var lastRoot = RootDirectoryRecord;
while (lastRoot.NextDirectoryRecord != null)
lastRoot = lastRoot.NextDirectoryRecord;
Dataset.Add<uint>(DicomTag.OffsetOfTheLastDirectoryRecordOfTheRootDirectoryEntity, lastRoot.Offset);
} else {
Dataset.Add<uint>(DicomTag.OffsetOfTheFirstDirectoryRecordOfTheRootDirectoryEntity, 0);
Dataset.Add<uint>(DicomTag.OffsetOfTheLastDirectoryRecordOfTheRootDirectoryEntity, 0);
}
}
/// <summary>
/// Handler for traversing beginning of sequence.
/// </summary>
/// <param name="sequence">Sequence to traverse.</param>
/// <returns>true if traversing completed without issues, false otherwise.</returns>
/// <remarks>On false return value, the method will invoke the callback method passed in <see cref="IDicomDatasetWalker.OnBeginWalk"/> before returning.</remarks>
public bool OnBeginSequence(DicomSequence sequence)
{
uint length = UndefinedLength;
if (_options.ExplicitLengthSequences || sequence.Tag.IsPrivate)
{
DicomWriteLengthCalculator calc = new DicomWriteLengthCalculator(_syntax, _options);
length = calc.Calculate(sequence);
}
_sequences.Push(sequence);
WriteTagHeader(sequence.Tag, DicomVR.SQ, length);
return(true);
}
/// <summary>
/// Recalculates the group length element for the specified group. Removes the group length element if no elements exist for the specified group.
/// </summary>
/// <remarks>For most use cases, this method will be called by the library as needed and will not need to be called by the user.</remarks>
/// <param name="dataset">DICOM dataset</param>
/// <param name="group">DICOM tag group</param>
/// <param name="createIfMissing">If set to <c>true</c>, the group length element will be created if missing. If set to <c>false</c>, the group length will only be calculated if the group length element exists.</param>
public static void RecalculateGroupLength(this DicomDataset dataset, ushort group, bool createIfMissing = true)
{
var items = dataset.EnumerateGroup(group).ToList();
if (items.Count == 0)
{
// no items exist for the specified group; remove
dataset.Remove(new DicomTag(group, 0x0000));
return;
}
var calculator = new DicomWriteLengthCalculator(dataset.InternalTransferSyntax, DicomWriteOptions.Default);
uint length = calculator.Calculate(items);
dataset.AddOrUpdate(new DicomTag(group, 0x0000), length);
}
/// <summary>
/// Recalculates the group lengths for all groups in the <paramref name="dataset"/>. Removes any group lengths for groups with out elements.
/// </summary>
/// <remarks>For most use cases, this method will be called by the library as needed and will not need to be called by the user.</remarks>
/// <param name="dataset">DICOM dataset</param>
/// <param name="createIfMissing">If set to <c>true</c>, group length elements will be created if missing. If set to <c>false</c>, only groups with existing group lengths will be recalculated.</param>
public static void RecalculateGroupLengths(this DicomDataset dataset, bool createIfMissing = true)
{
// recalculate group lengths for sequences first
foreach (var sq in dataset.Where(x => x.ValueRepresentation == DicomVR.SQ).Cast <DicomSequence>())
{
foreach (var item in sq.Items)
{
item.RecalculateGroupLengths(createIfMissing);
}
}
var calculator = new DicomWriteLengthCalculator(dataset.InternalTransferSyntax, DicomWriteOptions.Default);
IEnumerable <ushort> groups = null;
if (createIfMissing)
{
groups = dataset.Select(x => x.Tag.Group).Distinct();
}
else
{
groups = dataset.Where(x => x.Tag.Element == 0x0000).Select(x => x.Tag.Group);
}
foreach (var group in groups.ToList())
{
var items = dataset.EnumerateGroup(group).ToList();
if (items.Count == 0)
{
// no items exist for the specified group; remove
dataset.Remove(new DicomTag(group, 0x0000));
return;
}
uint length = calculator.Calculate(items);
dataset.AddOrUpdate(new DicomTag(group, 0x0000), length);
}
}
private void CalculateOffsets(DicomWriteLengthCalculator calculator) {
foreach (var item in Dataset.Get<DicomSequence>(DicomTag.DirectoryRecordSequence)) {
var record = item as DicomDirectoryRecord;
if (record == null)
throw new InvalidOperationException("Unexpected type for directory record: " + item.GetType());
record.Offset = _fileOffset;
_fileOffset += 4 + 4;//Sequence item tag;
_fileOffset += calculator.Calculate(record);
_fileOffset += 4 + 4; // Sequence Item Delimitation Item
}
_fileOffset += 4 + 4; // Sequence Delimitation Item
}