private Run determineIfRunIsABrukerTypeAndCreateRun(string folderName)
{
Run run = null;
var serFileInfo = findSerFile(folderName);
var fidFileInfo = findFIDFile(folderName);
var apexAcquisitionMethodFileInfo = findAcquisitionMethodFile(folderName);
var acqusFileInfos = findAcqusFile(folderName);
var hasSerOrFid = (serFileInfo != null || fidFileInfo != null);
var hasSettingFile = (apexAcquisitionMethodFileInfo != null || acqusFileInfos != null);
if (hasSerOrFid && hasSettingFile)
{
run = new BrukerV3Run(folderName);
}
else
{
var analysisBafFileInfo = findAnalysisBafFile(folderName);
var maxAcquisitionFileInfo = findMaxAcquisitionMethodFile(folderName);
if (analysisBafFileInfo != null && maxAcquisitionFileInfo != null)
{
run = new BrukerTOF(folderName);
}
}
return(run);
}
public Run CreateRun(Globals.MSFileType filetype, string f)
{
Run run;
if (filetype == Globals.MSFileType.MZXML_Rawdata)
{
pwiz.ProteowizardWrapper.DependencyLoader.ValidateLoader();
}
var fileName = getFullPath(f);
switch (filetype)
{
case Globals.MSFileType.Undefined:
run = null;
break;
case Globals.MSFileType.Agilent_WIFF:
run = null;
break;
case Globals.MSFileType.Agilent_D:
run = new AgilentDRun(fileName);
break;
case Globals.MSFileType.Ascii:
run = new MSScanFromTextFileRun(fileName);
break;
case Globals.MSFileType.Bruker:
run = new BrukerV3Run(fileName);
break;
#if !Disable_DeconToolsV2
case Globals.MSFileType.Bruker_V2:
run = new BrukerV2Run(fileName);
break;
#endif
case Globals.MSFileType.Bruker_Ascii:
run = null;
break;
case Globals.MSFileType.Finnigan:
run = new XCaliburRun2(fileName);
break;
case Globals.MSFileType.ICR2LS_Rawdata:
run = null;
break;
case Globals.MSFileType.Micromass_Rawdata:
run = null;
break;
case Globals.MSFileType.MZXML_Rawdata:
run = new MzRun(fileName);
break;
#if !Disable_DeconToolsV2
case Globals.MSFileType.PNNL_IMS:
run = new IMFRun(fileName);
break;
#endif
case Globals.MSFileType.PNNL_UIMF:
run = new UIMFRun(fileName);
break;
case Globals.MSFileType.SUNEXTREL:
run = null;
break;
// Deprecated in February 2017
// case Globals.MSFileType.YAFMS:
// run = new YAFMSRun(fileName);
// break;
default:
run = null;
break;
}
return(run);
}