public void LoadFromOldDeconToolsParameterFile(string xmlFilename)
{
var xDocument = XDocument.Load(xmlFilename);
var parameterBaseElement = xDocument.Element("parameters");
if (parameterBaseElement == null)
{
throw new IOException("Problem reading xml file " + xmlFilename + "; Expected element 'parameters' but it was not found");
}
ParameterFilename = xmlFilename;
var peakDetectionElement = parameterBaseElement.Element("PeakParameters");
PeakDetectorParameters.LoadParametersV2(peakDetectionElement);
var thrashElement = parameterBaseElement.Element("HornTransformParameters");
ThrashParameters.LoadParametersV2(thrashElement);
var miscElement = parameterBaseElement.Element("Miscellaneous");
MiscMSProcessingParameters.LoadParametersV2(miscElement);
var elements = parameterBaseElement.Elements();
//MSGenerator parameters are found in the old DeconTools parameter file under the 'HornTransformParameters' and the 'Miscellaneous' parameters
MSGeneratorParameters.LoadParametersV2(thrashElement);
MSGeneratorParameters.LoadParametersV2(miscElement);
//ScanBasedWorkflowParameters parameters are found in the old DeconTools parameter file under the 'HornTransformParameters' and the 'Miscellaneous' parameters
ScanBasedWorkflowParameters.LoadParametersV2(thrashElement);
ScanBasedWorkflowParameters.LoadParametersV2(miscElement);
ScanBasedWorkflowParameters.LoadParametersV2(peakDetectionElement);
}
public DeconToolsParameters()
{
MSGeneratorParameters = new MSGeneratorParameters();
PeakDetectorParameters = new PeakDetectorParameters();
ThrashParameters = new ThrashParameters();
MiscMSProcessingParameters = new MiscMSProcessingParameters();
ScanBasedWorkflowParameters = new ScanBasedWorkflowParameters();
}