public static Cell[,] Intialization_Step(string Seq1, string Seq2,int Sim,int NonSimilar,int Gap)
{
int M = Seq1.Length;//Length+1//-AAA
int N = Seq2.Length;//Length+1//-AAA
Cell[,] Matrix = new Cell[N, M];
//Intialize the first Row With Gap Penality Equal To i*Gap
for (int i = 0; i < Matrix.GetLength(1); i++)
{
Matrix[0, i] = new Cell(0, i, i*Gap);
}
//Intialize the first Column With Gap Penality Equal To i*Gap
for (int i = 0; i < Matrix.GetLength(0); i++)
{
Matrix[i, 0] = new Cell(i, 0, i*Gap);
}
// Fill Matrix with each cell has a value result from method Get_Max
for (int j = 1; j < Matrix.GetLength(0); j++)
{
for (int i = 1; i < Matrix.GetLength(1); i++)
{
Matrix[j, i] = Get_Max(i, j, Seq1, Seq2, Matrix,Sim,NonSimilar,Gap);
}
}
return Matrix;
}
