/// <summary>
/// Performs application-defined tasks associated with freeing, releasing, or resetting unmanaged resources.
/// </summary>
public void Dispose()
{
if (copasi != null)
{
copasi.Dispose();
copasi = null;
}
}
/// <summary>
/// Reload data from CUE
/// </summary>
public void Reload()
{
// reset data
reactionList.Clear();
if (copasi != null)
{
copasi.Dispose();
copasi = null;
}
copasi = new Copasi();
copasi.UpdateCompartmentVolume(cue.Volume);
foreach (var item in cue.Species)
{
copasi.AddSpecies(item);
copasi.UpdateSpeciesQuantity(
copasi.GetMetab(item),
cue.Molecules.GetQuantity(item)
);
}
foreach (var item in cue.ReactionTypes)
{
ReactionType reactionType = item;
CReaction copasiReaction = copasi.AddReaction(reactionType);
CModelValue modelValue = copasi.AddReactionParticleFluxValue(copasiReaction);
reactionList.Add(new CopasiReactionGroup(copasiReaction, reactionType, modelValue));
}
copasi.InitTrajectoryTask();
UnityEngine.Debug.Log("copasi: compiling...");
copasi.CompileAndUpdate();
UnityEngine.Debug.Log("copasi: saving...");
copasi.SaveModel("model.cps");
UnityEngine.Debug.Log("copasi: model updated");
currentTime = 0;
}
/// <summary>
/// Initializes a new instance of the <see cref="CellUnity.Simulation.Copasi.CopasiSimulator"/> class.
/// </summary>
public CopasiSimulator()
{
copasi = new Copasi();
}
