private void WriteCds(IInterval codingRegion, ITranscriptRegion exon, IRequiredFields requiredFields, IGeneralAttributes attribs)
{
if (!GffUtilities.HasCds(codingRegion, exon))
{
return;
}
var cds = GffUtilities.GetCdsCoordinates(codingRegion, exon);
_writer.WriteExonicRegion(cds, requiredFields, attribs, exon.Id, "CDS");
}
private void WriteUtr(IInterval codingRegion, ITranscriptRegion exon, IRequiredFields requiredFields,
IGeneralAttributes attribs)
{
if (!GffUtilities.HasUtr(codingRegion, exon))
{
return;
}
if (exon.Start < codingRegion.Start)
{
Write5PrimeUtr(codingRegion, exon, requiredFields, attribs);
}
if (exon.End > codingRegion.End)
{
Write3PrimeUtr(codingRegion, exon, requiredFields, attribs);
}
}