static public CaseIdToAASeq GetInstance()
{
CaseIdToAASeq caseId = new CaseIdToAASeq();
caseId._caseIdToAASeq = new Dictionary <string, AASeq>();
return(caseId);
}
// /*
// 1189MB MEPVDPNLEPWNHPGSQPKTPCTNCYCKHCSYHCLVCFQTKGLGISYGRK
// J112MA MEPVDPNLEPWNHPGSQPITACNKCYCKYCSYHCLVCFQTKGLGISYGRK
// 1157M3M MEPVDPNLEPWNHPGSQPKTPCNKCYCKHCSYHCLVCFQTKGLGISYGRK
// 1195MB MEPVDPNLEPWNHPGSQPKTPCNKCYCKYCSYHCLVCFQTKGLGISYGRK
// */
static public CaseIdToAASeq GetInstance(TextReader textReader, bool mixture)
{
CaseIdToAASeq caseIdToAASeq = CaseIdToAASeq.GetInstance();
foreach (Dictionary <string, string> row in SpecialFunctions.TabFileTable(textReader, "cid\taaSeq", false))
{
string caseId = row["cid"]; //!!!const
string aaSeqAsString = row["aaSeq"]; //!!!const
AASeq aaSeq = AASeq.GetInstance(aaSeqAsString, mixture);
caseIdToAASeq.Add(caseId, aaSeq);
}
return(caseIdToAASeq);
}