public static int Main(string[] args)
{
string filename = args[0];
string outfilename = args[1];
// Step 1. Test SWIG -> Activiz
vtkGDCMImageReader reader = vtkGDCMImageReader.New();
reader.SetFileName(filename);
//reader.Update(); // DO NOT call Update to check pipeline execution
Kitware.VTK.vtkImageData imgout = ConnectSWIGToActiviz(reader.GetOutput());
System.Console.WriteLine(imgout.ToString()); // not initialized as expected
vtkPNGWriter writer = new vtkPNGWriter();
writer.SetInput(imgout);
writer.SetFileName(outfilename);
writer.Write();
// Step 2. Test Activiz -> SWIG
vtkPNGReader bmpreader = new vtkPNGReader();
bmpreader.SetFileName(outfilename);
//bmpreader.Update(); // DO NOT update to check pipeline execution
System.Console.WriteLine(bmpreader.GetOutput().ToString()); // not initialized as expected
vtkgdcm.vtkImageData imgout2 = ConnectActivizToSWIG(bmpreader.GetOutput());
System.Console.WriteLine(imgout2.ToString()); // not initialized as expected
Kitware.VTK.vtkMedicalImageProperties prop = new Kitware.VTK.vtkMedicalImageProperties();
prop.SetModality("MR");
string outfilename2 = args[2];
vtkGDCMImageWriter writer2 = vtkGDCMImageWriter.New();
writer2.SetMedicalImageProperties(prop.CastToActiviz());
writer2.SetFileName(outfilename2);
writer2.SetInput(imgout2);
writer2.Write();
return(0);
}
public static int Main(string[] args)
{
string filename = args[0];
vtkGDCMImageReader reader = vtkGDCMImageReader.New();
reader.SetFileName(filename);
reader.Update();
vtkMedicalImageProperties prop = reader.GetMedicalImageProperties();
System.Console.WriteLine(prop.GetPatientName()); //
if (reader.GetImageFormat() == vtkgdcm.vtkgdcm.VTK_LUMINANCE) // MONOCHROME2
{
System.Console.WriteLine("Image is MONOCHROME2"); //
}
// Just for fun, invert the direction cosines, output should reflect that:
vtkMatrix4x4 dircos = reader.GetDirectionCosines();
dircos.Invert();
string outfilename = args[1];
vtkGDCMImageWriter writer = vtkGDCMImageWriter.New();
writer.SetMedicalImageProperties(reader.GetMedicalImageProperties());
writer.SetDirectionCosines(dircos);
writer.SetShift(reader.GetShift());
writer.SetScale(reader.GetScale());
writer.SetImageFormat(reader.GetImageFormat());
writer.SetFileName(outfilename);
//writer.SetInputConnection( reader.GetOutputPort() ); // new
writer.SetInput(reader.GetOutput()); // old
writer.Write();
return(0);
}
public static int ProcessOneMHDMD5(string filename)
{
vtkGDCMImageReader reader = vtkGDCMImageReader.New();
reader.FileLowerLeftOn();
reader.DebugOff();
int canread = reader.CanReadFile(filename);
if (canread == 0)
{
string refms = gdcm.Testing.GetMediaStorageFromFile(filename);
if (gdcm.MediaStorage.IsImage(gdcm.MediaStorage.GetMSType(refms)))
{
System.Console.Write("Problem with file: " + filename + "\n");
return(1);
}
// not an image
return(0);
}
reader.SetFileName(filename);
reader.Update();
// System.Console.Write(reader.GetOutput());
vtkMetaImageWriter writer = vtkMetaImageWriter.New();
writer.SetCompression(false);
writer.SetInput(reader.GetOutput());
string subdir = "MetaImageMD5Activiz";
string tmpdir = gdcm.Testing.GetTempDirectory(subdir);
if (!gdcm.PosixEmulation.FileIsDirectory(tmpdir))
{
gdcm.PosixEmulation.MakeDirectory(tmpdir);
}
string mhdfile = gdcm.Testing.GetTempFilename(filename, subdir);
string rawfile = mhdfile;
mhdfile += ".mhd";
rawfile += ".raw";
writer.SetFileName(mhdfile);
writer.Write();
string digestmhd = gdcm.Testing.ComputeFileMD5(mhdfile);
string digestraw = gdcm.Testing.ComputeFileMD5(rawfile);
string mhdref = vtkGDCMTesting.GetMHDMD5FromFile(filename);
string rawref = vtkGDCMTesting.GetRAWMD5FromFile(filename);
if (mhdref != digestmhd)
{
System.Console.Write("Problem with mhd file: " + filename + "\n");
System.Console.Write(digestmhd);
System.Console.Write("\n");
System.Console.Write(mhdref);
System.Console.Write("\n");
return(1);
}
if (rawref != digestraw)
{
System.Console.Write("Problem with raw file: " + filename + "\n");
System.Console.Write(digestraw);
System.Console.Write("\n");
System.Console.Write(rawref);
System.Console.Write("\n");
return(1);
}
return(0);
}