public string GetDisease(String symptoms_name)
{
List <disease> listDisease = new List <disease>();
string CS = ConfigurationManager.ConnectionStrings["EhealthConnectionString"].ConnectionString;
using (SqlConnection con = new SqlConnection(CS))
{
SqlCommand cmd = new SqlCommand("sendDisease", con);
cmd.CommandType = CommandType.StoredProcedure;
SqlParameter parameter = new SqlParameter();
parameter.ParameterName = "@symptoms";
parameter.Value = symptoms_name;
cmd.Parameters.Add(parameter);
con.Open();
SqlDataReader rdr = cmd.ExecuteReader();
while (rdr.Read())
{
disease dis = new disease();
dis.Disease = rdr["DiseaseName"].ToString();
listDisease.Add(dis);
}
String serializedList = JsonConvert.SerializeObject(listDisease);
return(serializedList);
}
}
private async void PhoneApplicationPage_Loaded(object sender, RoutedEventArgs e)
{
//if ((Application.Current as App).BindSearchEnd!=null&&(Application.Current as App).BindSearchEnd.Count != 0)
//{
// (Application.Current as App).BindSearchEnd.ToList().ForEach(a =>
// {
// se.Add(a);
// });
// loading.Visibility = Visibility.Collapsed;
// return;
//}
if (loaded)
{
return;
}
if (!string.IsNullOrEmpty(key))
{
//相关疾病post
string diseaseUrl = "http://drugs.dxy.cn/api/v2/search";
HttpRequestMessage request = new HttpRequestMessage(HttpMethod.Post, new Uri(diseaseUrl));
FormUrlEncodedContent postData = new FormUrlEncodedContent(
new List <KeyValuePair <string, string> >
{
new KeyValuePair <string, string>("category", "3"),
new KeyValuePair <string, string>("u", ""),
new KeyValuePair <string, string>("keywords", key),
new KeyValuePair <string, string>("mc", "0000000005e6b1d8ffffffff9c1fe4e0"),
new KeyValuePair <string, string>("page", "1"),
new KeyValuePair <string, string>("hardName", "ASUS_X002"),
new KeyValuePair <string, string>("ac", "d5424fa6-adff-4b0a-8917-4264daf4a348"),
new KeyValuePair <string, string>("bv", "2014"),
new KeyValuePair <string, string>("vc", "3.5"),
new KeyValuePair <string, string>("vs", "4.4.4"),
new KeyValuePair <string, string>("type", "1")
}
);
request.Content = postData;
HttpResponseMessage response = await c.SendAsync(request);
string responseString = await response.Content.ReadAsStringAsync();
dis = JsonConvert.DeserializeObject <disease>(responseString);
se.Add(new searchEnd {
Name = "相关疾病", Color = "Grey", Kind = "disease"
});
if (dis.Data != null)
{
if (dis.Data.Count < 2)
{
se.Add(new searchEnd {
Id = dis.Data[0].Id, Name = dis.Data[0].ShowName, Color = "White", Kind = "disease"
});
}
else
{
for (int i = 0; i < 2; i++)
{
se.Add(new searchEnd {
Id = dis.Data[i].Id, Name = dis.Data[i].ShowName, Color = "White", Kind = "disease"
});
}
}
}
//相关问答
string disease = "http://dxy.com/app/i/faq/qa/related?items_per_page=1000&q=" + key;
HttpResponseMessage msg = await c.GetAsync(disease);
var content = await msg.Content.ReadAsStringAsync();
if (!content.Contains("error"))
{
string tmp = content.Substring(8, content.Length - 9);
qa = JsonConvert.DeserializeObject <qa>(tmp);
se.Add(new searchEnd {
Name = "相关疾病问答", Color = "Grey", Kind = "qa"
});
if (qa.Items != null)
{
if (qa.Items.Count < 2)
{
se.Add(new searchEnd {
Id = qa.Items[0].Id, Name = qa.Items[0].Title, Color = "White", Kind = "qa", ArticleId = qa.Items[0].Article_id, DiseaseName = qa.Items[0].Disease_name
});
}
else
{
for (int i = 0; i < 2; i++)
{
se.Add(new searchEnd {
Id = qa.Items[i].Id, Name = qa.Items[i].Title, Color = "White", Kind = "qa", ArticleId = qa.Items[i].Article_id, DiseaseName = qa.Items[i].Disease_name
});
}
}
}
}
//相关科普文章
string article = "http://dxy.com/app/i/columns/article/related?q=" + key;
HttpResponseMessage articleMsg = await c.GetAsync(article);
var articleCon = await articleMsg.Content.ReadAsStringAsync();
string articleTmp = articleCon.Substring(8, articleCon.Length - 9);
art = JsonConvert.DeserializeObject <article>(articleTmp);
se.Add(new searchEnd {
Name = "相关科普文章", Color = "Grey", Kind = "article"
});
if (art.Items != null)
{
if (art.Items.Count < 2)
{
se.Add(new searchEnd {
Id = art.Items[0].Id, Name = art.Items[0].Article_title, Color = "White", Kind = "article"
});
}
else
{
for (int i = 0; i < 2; i++)
{
se.Add(new searchEnd {
Id = art.Items[i].Id, Name = art.Items[i].Article_title, Color = "White", Kind = "article"
});
}
}
}
//相关药品
request = new HttpRequestMessage(HttpMethod.Post, new Uri(diseaseUrl));
postData = new FormUrlEncodedContent(
new List <KeyValuePair <string, string> >
{
new KeyValuePair <string, string>("category", "1"),
new KeyValuePair <string, string>("u", ""),
new KeyValuePair <string, string>("keywords", key),
new KeyValuePair <string, string>("mc", "0000000005e6b1d8ffffffff9c1fe4e0"),
new KeyValuePair <string, string>("page", "1"),
new KeyValuePair <string, string>("hardName", "ASUS_X002"),
new KeyValuePair <string, string>("ac", "d5424fa6-adff-4b0a-8917-4264daf4a348"),
new KeyValuePair <string, string>("bv", "2014"),
new KeyValuePair <string, string>("vc", "3.5"),
new KeyValuePair <string, string>("vs", "4.4.4"),
new KeyValuePair <string, string>("type", "1")
}
);
request.Content = postData;
response = await c.SendAsync(request);
responseString = await response.Content.ReadAsStringAsync();
med = JsonConvert.DeserializeObject <medicine>(responseString);
se.Add(new searchEnd {
Name = "相关药品", Color = "Grey", Kind = "medicine"
});
if (med.Data != null)
{
if (med.Data.Count < 2)
{
se.Add(new searchEnd {
Id = med.Data[0].Id, Name = med.Data[0].ShowName, Color = "White", Kind = "medicine"
});
}
else
{
for (int i = 0; i < 2; i++)
{
se.Add(new searchEnd {
Id = med.Data[i].Id, Name = med.Data[i].ShowName, Color = "White", Kind = "medicine"
});
}
}
}
(Application.Current as App).BindQa = new ObservableCollection <qaSec>();
if (qa != null && qa.Items != null)
{
qa.Items.ForEach(z =>
{
(Application.Current as App).BindQa.Add(z);
});
}
(Application.Current as App).BindArticle = new ObservableCollection <articleSec>();
if (art != null && art.Items != null)
{
art.Items.ForEach(z =>
{
(Application.Current as App).BindArticle.Add(z);
});
}
(Application.Current as App).BindDisease = new ObservableCollection <diseaseSec>();
if (dis != null && dis.Data != null)
{
dis.Data.ForEach(z =>
{
(Application.Current as App).BindDisease.Add(z);
});
}
(Application.Current as App).BindMedicine = new ObservableCollection <medicineSec>();
if (med != null && med.Data != null)
{
med.Data.ForEach(z =>
{
(Application.Current as App).BindMedicine.Add(z);
});
}
//(Application.Current as App).BindSearchEnd = new ObservableCollection<searchEnd>();
//se.ToList().ForEach(z =>
//{
// (Application.Current as App).BindSearchEnd.Add(z);
//});
loading.Visibility = Visibility.Collapsed;
}
}
public HMDB_metabolite_single_file(XElement metaboliteElement)
{
Cts_cas = new List <string>();
Cts_kegg = new List <string>();
Cts_chebi = new List <string>();
string tmp_string = "";
foreach (XElement item in metaboliteElement.Elements())
{
switch (item.Name.LocalName)
{
case "accession":
tmp_string = item.Value.Replace("\r", "").Replace("\n", "").Replace("\t", "").Trim();
Hmdb_accession = (string.IsNullOrEmpty(tmp_string) || string.IsNullOrWhiteSpace(tmp_string) || tmp_string == "\n") ? "" : tmp_string;
break;
case "secondary_accessions":
Hmdb_secondary_accessions = new List <string>();
foreach (XElement secondary_accession in item.Elements().Where(x => x.Name.LocalName == "accession"))
{
if (string.IsNullOrEmpty(secondary_accession.Value) || string.IsNullOrWhiteSpace(secondary_accession.Value) || secondary_accession.Value == "\n")
{
continue;
}
else
{
Hmdb_secondary_accessions.Add(secondary_accession.Value.Replace("\r", "").Replace("\n", "").Replace("\t", "").Trim());
}
}
break;
case "name":
tmp_string = item.Value.Replace("\r", "").Replace("\n", "").Replace("\t", "").Trim();
Name = (string.IsNullOrEmpty(tmp_string) || string.IsNullOrWhiteSpace(tmp_string) || tmp_string == "\n") ? "" : tmp_string;
break;
case "description":
tmp_string = item.Value.Replace("\r", "").Replace("\n", "").Replace("\t", "").Trim();
Description = (string.IsNullOrEmpty(tmp_string) || string.IsNullOrWhiteSpace(tmp_string) || tmp_string == "\n") ? "" : tmp_string;
break;
case "synonyms":
Synonym_names = new List <string>();
foreach (XElement synonym_content in item.Elements().Where(x => x.Name.LocalName == "synonym"))
{
if (string.IsNullOrEmpty(synonym_content.Value) || string.IsNullOrWhiteSpace(synonym_content.Value) || synonym_content.Value == "\n")
{
continue;
}
else
{
Synonym_names.Add(synonym_content.Value.Replace("\r", "").Replace("\n", "").Replace("\t", "").Trim());
}
}
break;
case "chemical_formula":
tmp_string = item.Value.Replace("\r", "").Replace("\n", "").Replace("\t", "").Trim();
Formula = (string.IsNullOrEmpty(tmp_string) || string.IsNullOrWhiteSpace(tmp_string) || tmp_string == "\n") ? "" : tmp_string;
break;
case "average_molecular_weight":
tmp_string = item.Value.Replace("\r", "").Replace("\n", "").Replace("\t", "").Trim();
Average_molecular_weight = (string.IsNullOrEmpty(tmp_string) || string.IsNullOrWhiteSpace(tmp_string) || tmp_string == "\n") ? -1 : Convert.ToDouble(tmp_string);
break;
case "monisotopic_moleculate_weight":
tmp_string = item.Value.Replace("\r", "").Replace("\n", "").Replace("\t", "").Trim();
Monisotopic_molecular_weight = (string.IsNullOrEmpty(tmp_string) || string.IsNullOrWhiteSpace(tmp_string) || tmp_string == "\n") ? -1 : Convert.ToDouble(tmp_string);
break;
case "iupac_name":
tmp_string = item.Value.Replace("\r", "").Replace("\n", "").Replace("\t", "").Trim();
Iupac_name = (string.IsNullOrEmpty(tmp_string) || string.IsNullOrWhiteSpace(tmp_string) || tmp_string == "\n") ? "" : tmp_string;
break;
case "traditional_iupac":
tmp_string = item.Value.Replace("\r", "").Replace("\n", "").Replace("\t", "").Trim();
Traditional_iupac = (string.IsNullOrEmpty(tmp_string) || string.IsNullOrWhiteSpace(tmp_string) || tmp_string == "\n") ? "" : tmp_string;
break;
case "cas_registry_number":
tmp_string = item.Value.Replace("\r", "").Replace("\n", "").Replace("\t", "").Trim();
Cas_registry_number = (string.IsNullOrEmpty(tmp_string) || string.IsNullOrWhiteSpace(tmp_string) || tmp_string == "\n") ? "" : tmp_string;
break;
case "smiles":
tmp_string = item.Value.Replace("\r", "").Replace("\n", "").Replace("\t", "").Trim();
Smiles = (string.IsNullOrEmpty(tmp_string) || string.IsNullOrWhiteSpace(tmp_string) || tmp_string == "\n") ? "" : tmp_string;
break;
case "inchi":
tmp_string = item.Value.Replace("\r", "").Replace("\n", "").Replace("\t", "").Trim();
Inchi = (string.IsNullOrEmpty(tmp_string) || string.IsNullOrWhiteSpace(tmp_string) || tmp_string == "\n") ? "" : tmp_string;
break;
case "inchikey":
tmp_string = item.Value.Replace("\r", "").Replace("\n", "").Replace("\t", "").Trim();
Inchikey = (string.IsNullOrEmpty(tmp_string) || string.IsNullOrWhiteSpace(tmp_string) || tmp_string == "\n") ? "" : tmp_string;
break;
case "taxonomy":
My_taxonomy = new taxonomy()
{
Description = (string.IsNullOrEmpty(item.Elements().First(x => x.Name.LocalName == "description").Value) ||
string.IsNullOrWhiteSpace(item.Elements().First(x => x.Name.LocalName == "description").Value) ||
item.Elements().First(x => x.Name.LocalName == "description").Value == "\n") ?
"" : item.Elements().First(x => x.Name.LocalName == "description").Value.Replace("\r", "").Replace("\n", "").Replace("\t", "").Trim(),
Direct_parent = (string.IsNullOrEmpty(item.Elements().First(x => x.Name.LocalName == "direct_parent").Value) ||
string.IsNullOrWhiteSpace(item.Elements().First(x => x.Name.LocalName == "direct_parent").Value) ||
item.Elements().First(x => x.Name.LocalName == "direct_parent").Value == "\n") ?
"" : item.Elements().First(x => x.Name.LocalName == "direct_parent").Value.Replace("\r", "").Replace("\n", "").Replace("\t", "").Trim(),
Kingdom = (string.IsNullOrEmpty(item.Elements().First(x => x.Name.LocalName == "kingdom").Value) ||
string.IsNullOrWhiteSpace(item.Elements().First(x => x.Name.LocalName == "kingdom").Value) ||
item.Elements().First(x => x.Name.LocalName == "kingdom").Value == "\n") ?
"" : item.Elements().First(x => x.Name.LocalName == "kingdom").Value.Replace("\r", "").Replace("\n", "").Replace("\t", "").Trim(),
Super_class = (string.IsNullOrEmpty(item.Elements().First(x => x.Name.LocalName == "super_class").Value) ||
string.IsNullOrWhiteSpace(item.Elements().First(x => x.Name.LocalName == "super_class").Value) ||
item.Elements().First(x => x.Name.LocalName == "super_class").Value == "\n") ?
"" : item.Elements().First(x => x.Name.LocalName == "super_class").Value.Replace("\r", "").Replace("\n", "").Replace("\t", "").Trim(),
Tclass = (string.IsNullOrEmpty(item.Elements().First(x => x.Name.LocalName == "class").Value) ||
string.IsNullOrWhiteSpace(item.Elements().First(x => x.Name.LocalName == "class").Value) ||
item.Elements().First(x => x.Name.LocalName == "class").Value == "\n") ?
"" : item.Elements().First(x => x.Name.LocalName == "class").Value.Replace("\r", "").Replace("\n", "").Replace("\t", "").Trim(),
Molecular_framework = (string.IsNullOrEmpty(item.Elements().First(x => x.Name.LocalName == "direct_parent").Value) ||
string.IsNullOrWhiteSpace(item.Elements().First(x => x.Name.LocalName == "direct_parent").Value) ||
item.Elements().First(x => x.Name.LocalName == "direct_parent").Value == "\n") ?
"" : item.Elements().First(x => x.Name.LocalName == "direct_parent").Value.Replace("\r", "").Replace("\n", "").Replace("\t", "").Trim(),
Alternative_parents = item.Elements().First(x => x.Name.LocalName == "alternative_parents").Elements().Where(x => x.Name.LocalName == "alternative_parent").
Select(x => x.Value.Replace("\r", "").Replace("\n", "").Replace("\t", "").Trim()).ToList(),
Substituents = item.Elements().First(x => x.Name.LocalName == "substituents").Elements().Where(x => x.Name.LocalName == "substituent").
Select(x => x.Value.Replace("\r", "").Replace("\n", "").Replace("\t", "").Trim()).ToList()
};
break;
case "ontology":
My_onotology = new ontology()
{
Status = (string.IsNullOrEmpty(item.Elements().First(x => x.Name.LocalName == "status").Value) ||
string.IsNullOrWhiteSpace(item.Elements().First(x => x.Name.LocalName == "status").Value) ||
item.Elements().First(x => x.Name.LocalName == "status").Value == "\n") ?
"" : item.Elements().First(x => x.Name.LocalName == "status").Value.Replace("\r", "").Replace("\n", "").Replace("\t", "").Trim(),
Origins = item.Elements().First(x => x.Name.LocalName == "origins").Elements().Where(x => x.Name.LocalName == "origin").
Select(x => x.Value.Replace("\r", "").Replace("\n", "").Replace("\t", "").Trim()).ToList(),
Biofunctions = item.Elements().First(x => x.Name.LocalName == "biofunctions").Elements().Where(x => x.Name.LocalName == "biofunction").
Select(x => x.Value.Replace("\r", "").Replace("\n", "").Replace("\t", "").Trim()).ToList(),
Applications = item.Elements().First(x => x.Name.LocalName == "applications").Elements().Where(x => x.Name.LocalName == "application").
Select(x => x.Value.Replace("\r", "").Replace("\n", "").Replace("\t", "").Trim()).ToList(),
Cellular_locations = item.Elements().First(x => x.Name.LocalName == "cellular_locations").Elements().Where(x => x.Name.LocalName == "cellular_location").
Select(x => x.Value.Replace("\r", "").Replace("\n", "").Replace("\t", "").Trim()).ToList()
};
break;
case "state":
tmp_string = item.Value.Replace("\r", "").Replace("\n", "").Replace("\t", "").Trim();
State = (string.IsNullOrEmpty(tmp_string) || string.IsNullOrWhiteSpace(tmp_string) || tmp_string == "\n") ? "" : tmp_string;
break;
case "biofluid_locations":
Biofluid_locations = new List <string>();
foreach (XElement biofluid in item.Elements().Where(x => x.Name.LocalName == "biofluid"))
{
if (string.IsNullOrEmpty(biofluid.Value) || string.IsNullOrWhiteSpace(biofluid.Value) || biofluid.Value == "\n")
{
continue;
}
else
{
Biofluid_locations.Add(biofluid.Value.Replace("\r", "").Replace("\n", "").Replace("\t", "").Trim());
}
}
break;
case "tissue_locations":
Tissue_locations = new List <string>();
foreach (XElement tissue in item.Elements().Where(x => x.Name.LocalName == "tissue"))
{
if (string.IsNullOrEmpty(tissue.Value) || string.IsNullOrWhiteSpace(tissue.Value) || tissue.Value == "\n")
{
continue;
}
else
{
Tissue_locations.Add(tissue.Value.Replace("\r", "").Replace("\n", "").Replace("\t", "").Trim());
}
}
break;
case "pathways":
List_of_pathways = new List <pathway>();
string kegg_map_id = "", smpdb_id = "";
pathway ptwy;
foreach (XElement cpathway in item.Elements().Where(x => x.Name.LocalName == "pathway"))
{
kegg_map_id = (string.IsNullOrEmpty(cpathway.Elements().First(x => x.Name.LocalName == "kegg_map_id").Value) ||
string.IsNullOrWhiteSpace(cpathway.Elements().First(x => x.Name.LocalName == "kegg_map_id").Value) ||
cpathway.Elements().First(x => x.Name.LocalName == "kegg_map_id").Value == "\n") ?
"" : cpathway.Elements().First(x => x.Name.LocalName == "kegg_map_id").Value.Replace("\r", "").Replace("\n", "").Replace("\t", "").Trim();
smpdb_id = (string.IsNullOrEmpty(cpathway.Elements().First(x => x.Name.LocalName == "smpdb_id").Value) ||
string.IsNullOrWhiteSpace(cpathway.Elements().First(x => x.Name.LocalName == "smpdb_id").Value) ||
cpathway.Elements().First(x => x.Name.LocalName == "smpdb_id").Value == "\n") ?
"" : cpathway.Elements().First(x => x.Name.LocalName == "smpdb_id").Value.Replace("\r", "").Replace("\n", "").Replace("\t", "").Trim();
ptwy = new pathway()
{
Kegg_map_id = kegg_map_id,
Smpdb_map_id = smpdb_id
};
ptwy.get_details();
List_of_pathways.Add(ptwy);
}
foreach (SMPDB_pathway smpdb_ptwy in SMPDB_pathways.list_of_smpdb_pathways.Where(x => x.Hmdb_id == Hmdb_accession))
{
if (!List_of_pathways.Any(x => x.Smpdb_map_id == smpdb_ptwy.Id))
{
ptwy = new pathway()
{
Kegg_map_id = "",
Smpdb_map_id = smpdb_ptwy.Id
};
ptwy.get_details();
List_of_pathways.Add(ptwy);
}
}
break;
case "drugbank_id":
tmp_string = item.Value.Replace("\r", "").Replace("\n", "").Replace("\t", "").Trim();
Drugbank_id = (string.IsNullOrEmpty(tmp_string) || string.IsNullOrWhiteSpace(tmp_string) || tmp_string == "\n") ? "" : tmp_string;
break;
case "drugbank_metabolite_id":
tmp_string = item.Value.Replace("\r", "").Replace("\n", "").Replace("\t", "").Trim();
Drugbank_metabolite_id = (string.IsNullOrEmpty(tmp_string) || string.IsNullOrWhiteSpace(tmp_string) || tmp_string == "\n") ? "" : tmp_string;
break;
case "chemspider_id":
tmp_string = item.Value.Replace("\r", "").Replace("\n", "").Replace("\t", "").Trim();
Chemspider_id = (string.IsNullOrEmpty(tmp_string) || string.IsNullOrWhiteSpace(tmp_string) || tmp_string == "\n") ? "" : tmp_string;
break;
case "kegg_id":
Dict_kegg_details = new Dictionary <string, KEGG_entry_details>();
tmp_string = item.Value.Replace("\r", "").Replace("\n", "").Replace("\t", "").Trim();
Kegg_id = (string.IsNullOrEmpty(tmp_string) || string.IsNullOrWhiteSpace(tmp_string) || tmp_string == "\n") ? "" : tmp_string;
addKeggDetails((string.IsNullOrEmpty(tmp_string) || string.IsNullOrWhiteSpace(tmp_string) || tmp_string == "\n") ? "" : tmp_string);
break;
case "metlin_id":
tmp_string = item.Value.Replace("\r", "").Replace("\n", "").Replace("\t", "").Trim();
Metlin_id = (string.IsNullOrEmpty(tmp_string) || string.IsNullOrWhiteSpace(tmp_string) || tmp_string == "\n") ? "" : tmp_string;
break;
case "pubchem_compound_id":
tmp_string = item.Value.Replace("\r", "").Replace("\n", "").Replace("\t", "").Trim();
Pubchem_compound_id = (string.IsNullOrEmpty(tmp_string) || string.IsNullOrWhiteSpace(tmp_string) || tmp_string == "\n") ? "" : tmp_string;
break;
case "chebi_id":
tmp_string = item.Value.Replace("\r", "").Replace("\n", "").Replace("\t", "").Trim();
Chebi_id = (string.IsNullOrEmpty(tmp_string) || string.IsNullOrWhiteSpace(tmp_string) || tmp_string == "\n") ? "" : tmp_string;
break;
case "synthesis_reference":
tmp_string = item.Value.Replace("\r", "").Replace("\n", "").Replace("\t", "").Trim();
Synthesis_reference = (string.IsNullOrEmpty(tmp_string) || string.IsNullOrWhiteSpace(tmp_string) || tmp_string == "\n") ? "" : tmp_string;
break;
case "protein_associations":
List_of_proteins = new List <protein>();
foreach (XElement protein in item.Elements().Where(x => x.Name.LocalName == "protein"))
{
List_of_proteins.Add(new protein()
{
Protein_accession = (string.IsNullOrEmpty(protein.Elements().First(x => x.Name.LocalName == "protein_accession").Value) ||
string.IsNullOrWhiteSpace(protein.Elements().First(x => x.Name.LocalName == "protein_accession").Value) ||
protein.Elements().First(x => x.Name.LocalName == "protein_accession").Value == "\n") ?
"" : protein.Elements().First(x => x.Name.LocalName == "protein_accession").Value.Replace("\r", "").Replace("\n", "").Replace("\t", "").Trim(),
Name = (string.IsNullOrEmpty(protein.Elements().First(x => x.Name.LocalName == "name").Value) ||
string.IsNullOrWhiteSpace(protein.Elements().First(x => x.Name.LocalName == "name").Value) ||
protein.Elements().First(x => x.Name.LocalName == "name").Value == "\n") ?
"" : protein.Elements().First(x => x.Name.LocalName == "name").Value.Replace("\r", "").Replace("\n", "").Replace("\t", "").Trim(),
Uniprot_id = (string.IsNullOrEmpty(protein.Elements().First(x => x.Name.LocalName == "uniprot_id").Value) ||
string.IsNullOrWhiteSpace(protein.Elements().First(x => x.Name.LocalName == "uniprot_id").Value) ||
protein.Elements().First(x => x.Name.LocalName == "uniprot_id").Value == "\n") ?
"" : protein.Elements().First(x => x.Name.LocalName == "uniprot_id").Value.Replace("\r", "").Replace("\n", "").Replace("\t", "").Trim(),
Gene_name = (string.IsNullOrEmpty(protein.Elements().First(x => x.Name.LocalName == "gene_name").Value) ||
string.IsNullOrWhiteSpace(protein.Elements().First(x => x.Name.LocalName == "gene_name").Value) ||
protein.Elements().First(x => x.Name.LocalName == "gene_name").Value == "\n") ?
"" : protein.Elements().First(x => x.Name.LocalName == "gene_name").Value.Replace("\r", "").Replace("\n", "").Replace("\t", "").Trim(),
Protein_type = (string.IsNullOrEmpty(protein.Elements().First(x => x.Name.LocalName == "protein_type").Value) ||
string.IsNullOrWhiteSpace(protein.Elements().First(x => x.Name.LocalName == "protein_type").Value) ||
protein.Elements().First(x => x.Name.LocalName == "protein_type").Value == "\n") ?
"" : protein.Elements().First(x => x.Name.LocalName == "protein_type").Value.Replace("\r", "").Replace("\n", "").Replace("\t", "").Trim()
});
}
break;
case "diseases":
List_of_diseases = new List <disease>();
disease ds;
foreach (XElement cdisease in item.Elements().Where(x => x.Name.LocalName == "disease"))
{
ds = new disease()
{
Name = (string.IsNullOrEmpty(cdisease.Elements().First(x => x.Name.LocalName == "name").Value) ||
string.IsNullOrWhiteSpace(cdisease.Elements().First(x => x.Name.LocalName == "name").Value) ||
cdisease.Elements().First(x => x.Name.LocalName == "name").Value == "\n") ?
"" : cdisease.Elements().First(x => x.Name.LocalName == "name").Value.Replace("\r", "").Replace("\n", "").Replace("\t", "").Trim(),
Omim_id = (string.IsNullOrEmpty(cdisease.Elements().First(x => x.Name.LocalName == "omim_id").Value) ||
string.IsNullOrWhiteSpace(cdisease.Elements().First(x => x.Name.LocalName == "omim_id").Value) ||
cdisease.Elements().First(x => x.Name.LocalName == "omim_id").Value == "\n") ?
"" : cdisease.Elements().First(x => x.Name.LocalName == "omim_id").Value.Replace("\r", "").Replace("\n", "").Replace("\t", "").Trim(),
List_of_pubmed_ids = new List <string>()
};
foreach (XElement references in cdisease.Elements().Where(x => x.Name.LocalName == "references"))
{
foreach (XElement reference in references.Elements().Where(x => x.Name.LocalName == "reference"))
{
if (reference.Elements().Any(x => x.Name.LocalName == "pubmed_id") &&
!string.IsNullOrEmpty(reference.Elements().First(x => x.Name.LocalName == "pubmed_id").Value) &&
!string.IsNullOrWhiteSpace(reference.Elements().First(x => x.Name.LocalName == "pubmed_id").Value) &&
reference.Elements().First(x => x.Name.LocalName == "pubmed_id").Value != "\n")
{
ds.List_of_pubmed_ids.Add(reference.Elements().First(x => x.Name.LocalName == "pubmed_id").Value.Replace("\r", "").Replace("\n", "").Replace("\t", "").Trim());
}
}
}
List_of_diseases.Add(ds);
}
break;
default:
break;
}
}
}
