private void PerformTestType(eTestType TestType)
{
#region extract classes of interest
cGUI_ListClasses GUI_ListClasses = new cGUI_ListClasses();
GUI_ListClasses.IsCheckBoxes = !_DescEvolCellByCellItem.Checked;
GUI_ListClasses.IsSelectAll = true;
if (GUI_ListClasses.Run().IsSucceed == false) return;
cExtendedTable ListClassSelected = GUI_ListClasses.GetOutPut();
if (ListClassSelected.Sum() < 1)
{
MessageBox.Show("At least one classe has to be selected.", "Error !", MessageBoxButtons.OK, MessageBoxIcon.Error);
return;
}
#endregion
cDesignerTab DT = new cDesignerTab();
for (int i = 0; i < cGlobalInfo.CurrentScreening.ListDescriptors.Count; i++)
{
if (cGlobalInfo.CurrentScreening.ListDescriptors[i].IsActive() == false) continue;
cDesignerSplitter DS = new cDesignerSplitter();
DS.Orientation = Orientation.Vertical;
cViewerTable VTable = new cViewerTable();
cViewertext VT = new cViewertext();
cExtendedTable FinalTable = new cExtendedTable(cGlobalInfo.ListWellClasses.Count, 0, 0);
for (int j = 0; j < cGlobalInfo.ListWellClasses.Count; j++)
{
FinalTable[j].Tag = cGlobalInfo.ListWellClasses[j];
FinalTable[j].Name = cGlobalInfo.ListWellClasses[j].Name;
}
cListWells ListWellsToProcess = new cListWells(null);
cDescriptorType CurrentDesc = cGlobalInfo.CurrentScreening.ListDescriptors[i];
// build the table
foreach (cPlate CurrentPlate in cGlobalInfo.CurrentScreening.ListPlatesActive)
{
foreach (cWell CurrentWell in CurrentPlate.ListActiveWells)
{
if ((CurrentWell.GetCurrentClassIdx() < 0) || (ListClassSelected[0][CurrentWell.GetCurrentClassIdx()] == 0)) continue;
{
FinalTable[CurrentWell.GetCurrentClassIdx()].Add(CurrentWell.GetAverageValue(CurrentDesc));
ListWellsToProcess.Add(CurrentWell);
}
}
}
cClean C = new cClean();
C.SetInputData(FinalTable);
C.Run();
cExtendedTable NewTable = C.GetOutPut();
cTwoSampleFTest TSFTest = null;
cANOVA Anova = null;
cTwoSampleUnpooledTTest TwoSampleTTest = null;
cStudent_tTest StudentTTest = null;
if (TestType == eTestType.F_TEST)
{
TSFTest = new cTwoSampleFTest();
TSFTest.SetInputData(NewTable);
TSFTest.Run();
VTable.SetInputData(TSFTest.GetOutPut());
VT.SetInputData(TSFTest.GetInfo());
}
else if (TestType == eTestType.ANOVA)
{
Anova = new cANOVA();
Anova.SetInputData(NewTable);
Anova.Run();
VTable.SetInputData(Anova.GetOutPut());
VT.SetInputData(Anova.GetInfo());
}
else if (TestType == eTestType.TWO_SAMPLES_T_TEST)
{
TwoSampleTTest = new cTwoSampleUnpooledTTest();
TwoSampleTTest.SetInputData(NewTable);
TwoSampleTTest.Run();
VTable.SetInputData(TwoSampleTTest.GetOutPut());
VT.SetInputData(TwoSampleTTest.GetInfo());
}
else if (TestType == eTestType.STUDENT_T_TEST)
{
StudentTTest = new cStudent_tTest();
StudentTTest.SetInputData(NewTable);
StudentTTest.Run();
VTable.SetInputData(StudentTTest.GetOutPut());
VT.SetInputData(StudentTTest.GetInfo());
}
VTable.DigitNumber = -1;
VTable.Run();
DS.SetInputData(VTable.GetOutPut());
VT.Run();
DS.SetInputData(VT.GetOutPut());
DS.Run();
DS.Title = cGlobalInfo.CurrentScreening.ListDescriptors[i].GetName();
cDesignerSplitter DSMain = new cDesignerSplitter();
DSMain.Orientation = Orientation.Horizontal;
DSMain.SetInputData(DS.GetOutPut());
// Compute and display associated Stacked histogram
//CDW1.Title = CompleteScreening.ListDescriptors[CompleteScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName() + " - Stacked Histogram - " + PlateList.Count + " plates";
cExtendedTable TableForHisto = ListWellsToProcess.GetAverageDescriptorValues(i);
TableForHisto.Name = "";
cViewerStackedHistogram CV1 = new cViewerStackedHistogram();
CV1.SetInputData(TableForHisto);
CV1.Chart.LabelAxisX = cGlobalInfo.CurrentScreening.ListDescriptors[i].GetName();
CV1.Chart.IsLegend = true;
CV1.Run();
DSMain.SetInputData(CV1.GetOutPut());
DSMain.Title = cGlobalInfo.CurrentScreening.ListDescriptors[i].GetName();
DSMain.Run();
DT.SetInputData(DSMain.GetOutPut());
}
DT.Run();
cDisplayToWindow DTW = new cDisplayToWindow();
DTW.SetInputData(DT.GetOutPut());
DTW.Title = "Classification Significance - " + TestType.ToString();
DTW.Run();
DTW.Display();
}
private void dToolStripMenuItem_Click(object sender, EventArgs e)
{
cFeedBackMessage MessageReturned;
cGUI_ListClasses GUI_ListClasses = new cGUI_ListClasses();
GUI_ListClasses.IsCheckBoxes = true;
GUI_ListClasses.IsSelectAll = true;
if (GUI_ListClasses.Run().IsSucceed == false) return;
cExtendedList ListClassSelected = GUI_ListClasses.GetOutPut()[0];
List<cWellClassType> ListWellClassesSelected = new List<cWellClassType>();
foreach (var item in ListClassSelected.ListTags)
{
ListWellClassesSelected.Add((cWellClassType)(item));
}
cViewerGraph1D V1D = new cViewerGraph1D();
V1D.Chart.IsSelectable = true;
V1D.Chart.LabelAxisX = "Well Index";
V1D.Chart.LabelAxisY = cGlobalInfo.CurrentScreening.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName();
V1D.Chart.IsXGrid = true;
if (ProcessModeCurrentPlateOnlyToolStripMenuItem.Checked)
{
cExtendedTable DataFromPlate = new cExtendedTable(cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate().ListActiveWells,
cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx, ListClassSelected);
DataFromPlate.Name = cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate().GetName();
V1D.Chart.IsShadow = true;
V1D.Chart.IsBorder = true;
//V1D.Chart.IsSelectable = true;
V1D.Chart.CurrentTitle.Tag = cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate();
V1D.SetInputData(DataFromPlate);
V1D.Run();
cDesignerSplitter DS = new cDesignerSplitter();
DS.Orientation = System.Windows.Forms.Orientation.Horizontal;
DS.SetInputData(V1D.GetOutPut());
cExtendedTable NewTable = cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate().ListActiveWells.Filter(ListWellClassesSelected).GetAverageDescriptorValues(cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx);
NewTable.Name = "Histogram";
cViewerStackedHistogram CV1 = new cViewerStackedHistogram();
CV1.SetInputData(NewTable);
CV1.Chart.LabelAxisX = cGlobalInfo.CurrentScreening.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName();
CV1.Run();
DS.SetInputData(CV1.GetOutPut());
DS.Run();
cDisplayToWindow Disp0 = new cDisplayToWindow();
Disp0.SetInputData(DS.GetOutPut());
Disp0.Title = "Scatter points graph - " + DataFromPlate[0].Count + " wells.";
if (!Disp0.Run().IsSucceed) return;
Disp0.Display();
}
else if (ProcessModeEntireScreeningToolStripMenuItem.Checked)
{
V1D.Chart.MarkerSize = 5;
V1D.Chart.IsBorder = false;
V1D.Chart.IsShadow = false;
cListWells ListWell = new cListWells(null);
int IdxWellForPlateSeparator = 0;
foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive)
{
foreach (cWell TmpWell in TmpPlate.ListActiveWells)
{
int ClassTmp = TmpWell.GetCurrentClassIdx();
if ((ClassTmp == -1) || (GUI_ListClasses.GetOutPut()[0][TmpWell.GetCurrentClassIdx()] == 0)) continue;
ListWell.Add(TmpWell);
IdxWellForPlateSeparator++;
}
if (cGlobalInfo.OptionsWindow.FFAllOptions.checkBoxDisplayPlatesVerticalLines.Checked)
{
Classes.Base_Classes.General.cLineVerticalForGraph VL = new Classes.Base_Classes.General.cLineVerticalForGraph(IdxWellForPlateSeparator + 0.5);
VL.IsAllowMoving = false;
V1D.Chart.ListVerticalLines.Add(VL);
}
}
cExtendedTable DataFromPlate = new cExtendedTable(ListWell,
cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx, ListClassSelected);
DataFromPlate.Name = cGlobalInfo.CurrentScreening.GetName() + " - " + cGlobalInfo.CurrentScreening.ListPlatesActive.Count + " plates";
int MaxNumberOfPts = (int)cGlobalInfo.OptionsWindow.FFAllOptions.numericUpDownMinNumPointForFastDisp.Value;
if (ListWell.Count > MaxNumberOfPts)
{
cGlobalInfo.WindowHCSAnalyzer.richTextBoxConsole.AppendText("\n" + V1D.Title + ": Number of Wells is Higher than " + MaxNumberOfPts + " => Switching to FastPoints Mode.\n");
V1D.Chart.ISFastPoint = true;
}
V1D.SetInputData(DataFromPlate);
V1D.Run();
cDesignerSplitter DS = new cDesignerSplitter();
DS.Orientation = System.Windows.Forms.Orientation.Horizontal;
DS.SetInputData(V1D.GetOutPut());
cExtendedTable NewTable = ListWell.GetAverageDescriptorValues(cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx);
NewTable.Name = "Histogram";
cViewerStackedHistogram CV1 = new cViewerStackedHistogram();
CV1.SetInputData(NewTable);
CV1.Chart.LabelAxisX = cGlobalInfo.CurrentScreening.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName();
CV1.Run();
DS.SetInputData(CV1.GetOutPut());
DS.Run();
cDisplayToWindow Disp0 = new cDisplayToWindow();
Disp0.SetInputData(DS.GetOutPut());
Disp0.Title = "Scatter points graph - " + DataFromPlate[0].Count + " wells.";
if (!Disp0.Run().IsSucceed) return;
Disp0.Display();
}
else if (ProcessModeplateByPlateToolStripMenuItem.Checked)
{
cDesignerTab CDT = new cDesignerTab();
foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive)
{
cExtendedTable DataFromPlate = new cExtendedTable(TmpPlate.ListActiveWells,
cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx, ListClassSelected);
DataFromPlate.Name = TmpPlate.GetName();
V1D = new cViewerGraph1D();
V1D.Chart.IsSelectable = true;
V1D.Chart.LabelAxisX = "Well Index";
V1D.Chart.LabelAxisY = cGlobalInfo.CurrentScreening.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName();
V1D.Chart.IsXGrid = true;
V1D.Chart.CurrentTitle.Tag = TmpPlate;
V1D.SetInputData(DataFromPlate);
V1D.Title = TmpPlate.GetName();
V1D.Run();
cDesignerSplitter DS = new cDesignerSplitter();
DS.Orientation = System.Windows.Forms.Orientation.Horizontal;
DS.SetInputData(V1D.GetOutPut());
cExtendedTable NewTable = TmpPlate.ListActiveWells.Filter(ListWellClassesSelected).GetAverageDescriptorValues(cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx);
NewTable.Name = "Histogram";
cViewerStackedHistogram CV1 = new cViewerStackedHistogram();
CV1.SetInputData(NewTable);
CV1.Chart.LabelAxisX = cGlobalInfo.CurrentScreening.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName();
CV1.Run();
DS.Title = TmpPlate.GetName();
DS.SetInputData(CV1.GetOutPut());
DS.Run();
CDT.SetInputData(DS.GetOutPut());
}
CDT.Run();
cDisplayToWindow Disp0 = new cDisplayToWindow();
Disp0.SetInputData(CDT.GetOutPut());
Disp0.Title = "Scatter points graphs";
if (!Disp0.Run().IsSucceed) return;
Disp0.Display();
}
}
private void stackedHistogramsToolStripMenuItem_Click(object sender, EventArgs e)
{
cGUI_ListClasses GUI_ListClasses = new cGUI_ListClasses();
GUI_ListClasses.IsCheckBoxes = true;
GUI_ListClasses.IsSelectAll = true;
if (GUI_ListClasses.Run().IsSucceed == false) return;
cExtendedList ListClassSelected = GUI_ListClasses.GetOutPut()[0];
if (ListClassSelected.Sum() < 1)
{
MessageBox.Show("At least one classe has to be selected.", "Error !", MessageBoxButtons.OK, MessageBoxIcon.Error);
return;
}
cDisplayToWindow CDW1 = new cDisplayToWindow();
if ((ProcessModeCurrentPlateOnlyToolStripMenuItem.Checked) || (ProcessModeEntireScreeningToolStripMenuItem.Checked))
{
cListWells ListWellsToProcess = new cListWells(null);
List<cPlate> PlateList = new List<cPlate>();
if (ProcessModeCurrentPlateOnlyToolStripMenuItem.Checked)
PlateList.Add(cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate());
else
{
foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive) PlateList.Add(TmpPlate);
}
foreach (cPlate TmpPlate in PlateList)
foreach (cWell item in TmpPlate.ListActiveWells)
if ((item.GetCurrentClassIdx() != -1) && (ListClassSelected[item.GetCurrentClassIdx()] == 1)) ListWellsToProcess.Add(item);
if (ProcessModeCurrentPlateOnlyToolStripMenuItem.Checked)
CDW1.Title = cGlobalInfo.CurrentScreening.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName() + " - Stacked Histogram (" + PlateList[0].GetName() + ")";
else
CDW1.Title = cGlobalInfo.CurrentScreening.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName() + " - Stacked Histogram - " + PlateList.Count + " plates";
cExtendedTable NewTable = ListWellsToProcess.GetAverageDescriptorValues(cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx);
NewTable.Name = CDW1.Title;
cViewerStackedHistogram CV1 = new cViewerStackedHistogram();
CV1.SetInputData(NewTable);
CV1.Chart.LabelAxisX = cGlobalInfo.CurrentScreening.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName();
CV1.Run();
CDW1.SetInputData(CV1.GetOutPut());
}
else if (ProcessModeplateByPlateToolStripMenuItem.Checked)
{
cDesignerTab CDT = new cDesignerTab();
foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive)
{
cListWells ListWellsToProcess = new cListWells(null);
foreach (cWell item in TmpPlate.ListActiveWells)
if ((item.GetCurrentClassIdx() != -1) && (ListClassSelected[item.GetCurrentClassIdx()] == 1)) ListWellsToProcess.Add(item);
cExtendedTable NewTable = ListWellsToProcess.GetAverageDescriptorValues(cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx);
NewTable.Name = cGlobalInfo.CurrentScreening.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName() + " - " + TmpPlate.GetName();
cViewerStackedHistogram CV1 = new cViewerStackedHistogram();
CV1.SetInputData(NewTable);
CV1.Chart.LabelAxisX = cGlobalInfo.CurrentScreening.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName();
CV1.Title = TmpPlate.GetName();
CV1.Run();
CDT.SetInputData(CV1.GetOutPut());
}
CDT.Run();
CDW1.SetInputData(CDT.GetOutPut());
CDW1.Title = "Stacked Histogram - " + cGlobalInfo.CurrentScreening.ListPlatesActive.Count + " plates";
}
CDW1.Run();
CDW1.Display();
}
public void PerformScreeningClustering(List<cPlate> ListPlatesToProcess, bool IsOneByOne)
{
this.Cursor = Cursors.WaitCursor;
cMachineLearning MachineLearning = new cMachineLearning(this.GlobalInfo);
cParamAlgo ParamAlgoForClustering = MachineLearning.AskAndGetClusteringAlgo();
if (ParamAlgoForClustering == null)
{
this.Cursor = Cursors.Default;
return;
}
//DataTable dt = new DataTable();
cExtendedTable dt = new cExtendedTable();
for (int IdxDesc = 0; IdxDesc < cGlobalInfo.CurrentScreening.ListDescriptors.Count; IdxDesc++)
{
if (cGlobalInfo.CurrentScreening.ListDescriptors[IdxDesc].IsActive())
dt.Add(new cExtendedList(cGlobalInfo.CurrentScreening.ListDescriptors[IdxDesc].GetName()));
}
if (IsOneByOne)
{
foreach (cPlate itemPlate in ListPlatesToProcess)
{
cListWells ListWell = new cListWells(null);
foreach (var item in itemPlate.ListActiveWells)
ListWell.Add(item);
dt = ListWell.GetAverageDescriptorValues(cGlobalInfo.CurrentScreening.ListDescriptors.GetActiveDescriptors(), false, false);
MachineLearning.SelectedClusterer = MachineLearning.BuildClusterer(ParamAlgoForClustering, dt);
if (MachineLearning.SelectedClusterer != null)
{
double[] Assign = MachineLearning.EvaluteAndDisplayClusterer(richTextBoxInfoClustering,
null,
MachineLearning.CreateInstancesWithoutClass(dt)).getClusterAssignments();
MachineLearning.Classes = new cExtendedList();
MachineLearning.Classes.AddRange(Assign);
}
if (MachineLearning.Classes.Max() >= cGlobalInfo.ListWellClasses.Count)
{
MessageBox.Show("The number of clusters is higher than the supported number of classes. Operation cancelled !", "Error", MessageBoxButtons.OK, MessageBoxIcon.Error);
this.Cursor = Cursors.Default;
return;
}
if (MachineLearning.Classes.IsContainNegative() || (MachineLearning.Classes.Count == 0))
{
MessageBox.Show("Negative or null cluster index identified. Operation cancelled !", "Error", MessageBoxButtons.OK, MessageBoxIcon.Error);
this.Cursor = Cursors.Default;
return;
}
// ----- update well classes ------
int IdxWell = 0;
foreach (cWell item in itemPlate.ListActiveWells)
item.SetClass((int)MachineLearning.Classes[IdxWell++]);
}
}
else
{
cListWells ListWell = new cListWells(null);
foreach (cPlate itemPlate in ListPlatesToProcess)
{
foreach (cWell item in itemPlate.ListActiveWells)
{
//cExtendedList ListValues = item.GetAverageValuesList(false);
//dt.Rows.Add();
//int RealIdx = 0;
//for (int IdxDesc = 0; IdxDesc < CompleteScreening.ListDescriptors.Count; IdxDesc++)
//{
// if (CompleteScreening.ListDescriptors[IdxDesc].IsActive())
// dt.Rows[dt.Rows.Count - 1][RealIdx++] = ListValues[IdxDesc];
ListWell.Add(item);
//}
}
}
dt = ListWell.GetAverageDescriptorValues(cGlobalInfo.CurrentScreening.ListDescriptors.GetActiveDescriptors(), false, false);
MachineLearning.SelectedClusterer = MachineLearning.BuildClusterer(ParamAlgoForClustering, dt);
if (MachineLearning.SelectedClusterer != null)
{
double[] Assign = MachineLearning.EvaluteAndDisplayClusterer(richTextBoxInfoClustering,
null,
MachineLearning.CreateInstancesWithoutClass(dt)).getClusterAssignments();
MachineLearning.Classes = new cExtendedList();
MachineLearning.Classes.AddRange(Assign);
}
if (MachineLearning.Classes.Max() >= cGlobalInfo.ListWellClasses.Count)
{
MessageBox.Show("The number of cluster is higher than the supported number of classes. Operation cancelled !", "Error", MessageBoxButtons.OK, MessageBoxIcon.Error);
this.Cursor = Cursors.Default;
return;
}
if (MachineLearning.Classes.IsContainNegative() || (MachineLearning.Classes.Count == 0))
{
MessageBox.Show("Negative or null cluster index identified. Operation cancelled !", "Error", MessageBoxButtons.OK, MessageBoxIcon.Error);
this.Cursor = Cursors.Default;
return;
}
int IdxWell = 0;
// ----- update well classes ------
foreach (cPlate itemPlate in ListPlatesToProcess)
{
foreach (cWell item in itemPlate.ListActiveWells)
item.SetClass((int)MachineLearning.Classes[IdxWell++]);
}
}
cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate().DisplayDistribution(cGlobalInfo.CurrentScreening.ListDescriptors.GetActiveDescriptor(), false);
this.Cursor = Cursors.Default;
}
private void ToolStripMenuItem_DisplayHistograms(object sender, EventArgs e)
{
if (GlobalInfo == null) return;
for (int i = 0; i < cGlobalInfo.ListWellClasses.Count; i++)
{
if (cGlobalInfo.ListWellClasses[i].Name == this.Name)
{
Idx = i;
break;
}
}
if (Idx == -1) return;
if ((cGlobalInfo.CurrentScreening.ListDescriptors == null) || (cGlobalInfo.CurrentScreening.ListDescriptors.Count == 0)) return;
cDisplayToWindow CDW1 = new cDisplayToWindow();
cListWells ListWellsToProcess = new cListWells(null);
List<cPlate> PlateList = new List<cPlate>();
cDesignerSplitter DS = new cDesignerSplitter();
foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive) PlateList.Add(TmpPlate);
foreach (cPlate TmpPlate in PlateList)
foreach (cWell item in TmpPlate.ListActiveWells)
if (item.GetCurrentClassIdx() == base.Idx) ListWellsToProcess.Add(item);
cExtendedTable NewTable2 = ListWellsToProcess.GetAverageDescriptorValues(cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx);
NewTable2.Name = cGlobalInfo.CurrentScreening.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName() + " - Histogram - " + PlateList.Count + " plates";
cViewerStackedHistogram CV2 = new cViewerStackedHistogram();
CV2.SetInputData(NewTable2);
CV2.Chart.LabelAxisX = cGlobalInfo.CurrentScreening.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName();
CV2.Chart.IsBorder = false;
CV2.Chart.Width = 0;
CV2.Chart.Height = 0;
//StripLine AverageLine = new StripLine();
//AverageLine.BackColor = Color.Red;
//AverageLine.IntervalOffset = GlobalInfo.CurrentScreen.ListDescriptors[Parent.ListDescriptors.CurrentSelectedDescriptor].GetValue();
//AverageLine.StripWidth = 0.0001;
//AverageLine.Text = this.ListDescriptors[Parent.ListDescriptors.CurrentSelectedDescriptor].GetValue().ToString("N2");
CV2.Run();
//CV2.Chart.ChartAreas[0].AxisX.StripLines.Add(AverageLine);
DS.SetInputData(CV2.GetOutPut());
PlateList.Clear();
PlateList.Add(cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate());
ListWellsToProcess.Clear();
foreach (cPlate TmpPlate in PlateList)
foreach (cWell item in TmpPlate.ListActiveWells)
if (item.GetCurrentClassIdx() == Idx) ListWellsToProcess.Add(item);
CDW1.Title = cGlobalInfo.CurrentScreening.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName() + " - Histogram (" + PlateList[0].GetName() + ")";
cExtendedTable NewTable = ListWellsToProcess.GetAverageDescriptorValues(cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx);
NewTable.Name = CDW1.Title;
cViewerStackedHistogram CV1 = new cViewerStackedHistogram();
CV1.SetInputData(NewTable);
CV1.Chart.LabelAxisX = cGlobalInfo.CurrentScreening.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName();
CV1.Chart.Width = 0;
CV1.Chart.Height = 0;
// CV1.Chart.ChartAreas[0].AxisX.Minimum = CV2.Chart.ChartAreas[0].AxisX.Minimum;
// CV1.Chart.ChartAreas[0].AxisX.Maximum = CV2.Chart.ChartAreas[0].AxisX.Maximum;
CV1.Run();
// CV1.Chart.ChartAreas[0].AxisX.StripLines.Add(AverageLine);
DS.SetInputData(CV1.GetOutPut());
DS.Run();
CDW1.SetInputData(DS.GetOutPut());
CDW1.Run();
CDW1.Display();
return;
}
private void ToolStripMenuItem_DisplayAsStackedHistograms(object sender, EventArgs e)
{
cDisplayToWindow CDW1 = new cDisplayToWindow();
cListWells ListWellsToProcess = new cListWells(null);
List<cPlate> PlateList = new List<cPlate>();
PlateList.Add(this);
foreach (cPlate TmpPlate in PlateList)
foreach (cWell item in TmpPlate.ListActiveWells)
if (item.GetCurrentClassIdx() != -1) ListWellsToProcess.Add(item);
CDW1.Title = this.ParentScreening.ListDescriptors[this.ParentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName() + " - Stacked Histogram (" + PlateList[0].Name + ")";
cExtendedTable NewTable = ListWellsToProcess.GetAverageDescriptorValues(this.ParentScreening.ListDescriptors.CurrentSelectedDescriptorIdx);
NewTable.Name = CDW1.Title;
cViewerStackedHistogram CV1 = new cViewerStackedHistogram();
CV1.SetInputData(NewTable);
CV1.Chart.LabelAxisX = this.ParentScreening.ListDescriptors[this.ParentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName();
CV1.Run();
CDW1.SetInputData(CV1.GetOutPut());
CDW1.Run();
CDW1.Display();
}
//private void ToolStripMenuItem_DisplayImage(object sender, EventArgs e)
//{
// vtkImageData ID0 = null;
// string[] ListChar = this.Info.Split('.');
// if (ListChar[ListChar.Length - 1].ToLower() == "jpg")
// {
// vtkJPEGReader JPEGReader = vtkJPEGReader.New();
// JPEGReader.SetFileName(this.Info);
// JPEGReader.Update();
// ID0 = JPEGReader.GetOutput();
// }
// if ((ListChar[ListChar.Length - 1].ToLower() == "tif") || (ListChar[ListChar.Length - 1].ToLower() == "tiff"))
// {
// vtkTIFFReader TIFFReader = vtkTIFFReader.New();
// TIFFReader.SetFileName(this.Info);
// TIFFReader.Update();
// ID0 = TIFFReader.GetOutput();
// }
// vtkImageReader Reader = vtkImageReader.New();
// Reader.SetFileName(this.Info);
// Reader.Update();
// if (Reader == null) return;
// //vtkJPEGReader TIFFReader = vtkJPEGReader.New();
// //TIFFReader.SetFileName(this.Info);
// //TIFFReader.Update();
// // cVolume3D Volume3D0 = new cVolume3D(ID0, new HCSAnalyzer.Classes._3D.cPoint3D(0, 0, 0));
// cViewerImage3D VI3D = new cViewerImage3D();
// VI3D.SetInputData(ID0);
// VI3D.Run();
// cDisplayToWindow DTW = new cDisplayToWindow();
// DTW.SetInputData(VI3D.GetOutPut());
// DTW.Title = this.Info;
// DTW.Run();
// DTW.Title = this.Info;
// DTW.Display();
//}
private void DisplayHisto(object sender, EventArgs e)
{
if ((cGlobalInfo.CurrentScreening.ListDescriptors == null) || (cGlobalInfo.CurrentScreening.ListDescriptors.Count == 0)) return;
cDisplayToWindow CDW1 = new cDisplayToWindow();
cListWells ListWellsToProcess = new cListWells(null);
List<cPlate> PlateList = new List<cPlate>();
cDesignerSplitter DS = new cDesignerSplitter();
foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive) PlateList.Add(TmpPlate);
foreach (cPlate TmpPlate in PlateList)
foreach (cWell item in TmpPlate.ListActiveWells)
if (item.GetCurrentClassIdx() != -1) ListWellsToProcess.Add(item);
cExtendedTable NewTable2 = ListWellsToProcess.GetAverageDescriptorValues(cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx);
NewTable2.Name = cGlobalInfo.CurrentScreening.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName() + " - Stacked Histogram - " + PlateList.Count + " plates";
cViewerStackedHistogram CV2 = new cViewerStackedHistogram();
CV2.SetInputData(NewTable2);
CV2.Chart.LabelAxisX = cGlobalInfo.CurrentScreening.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName();
CV2.Chart.IsBorder = false;
CV2.Chart.Width = 0;
CV2.Chart.Height = 0;
StripLine AverageLine = new StripLine();
AverageLine.BackColor = Color.Red;
AverageLine.IntervalOffset = this.ListSignatures[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetValue();
AverageLine.StripWidth = 0.0001;
AverageLine.Text = this.ListSignatures[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetValue().ToString("N2");
CV2.Run();
CV2.Chart.ChartAreas[0].AxisX.StripLines.Add(AverageLine);
DS.SetInputData(CV2.GetOutPut());
PlateList.Clear();
PlateList.Add(cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate());
ListWellsToProcess.Clear();
foreach (cPlate TmpPlate in PlateList)
foreach (cWell item in TmpPlate.ListActiveWells)
if (item.GetCurrentClassIdx() != -1) ListWellsToProcess.Add(item);
CDW1.Title = cGlobalInfo.CurrentScreening.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName() + " - Stacked Histogram (" + PlateList[0].GetName() + ")";
cExtendedTable NewTable = ListWellsToProcess.GetAverageDescriptorValues(cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx);
NewTable.Name = CDW1.Title;
cViewerStackedHistogram CV1 = new cViewerStackedHistogram();
CV1.SetInputData(NewTable);
CV1.Chart.LabelAxisX = cGlobalInfo.CurrentScreening.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName();
CV1.Chart.Width = 0;
CV1.Chart.Height = 0;
// CV1.Chart.ChartAreas[0].AxisX.Minimum = CV2.Chart.ChartAreas[0].AxisX.Minimum;
// CV1.Chart.ChartAreas[0].AxisX.Maximum = CV2.Chart.ChartAreas[0].AxisX.Maximum;
CV1.Run();
CV1.Chart.ChartAreas[0].AxisX.StripLines.Add(AverageLine);
DS.SetInputData(CV1.GetOutPut());
DS.Run();
CDW1.SetInputData(DS.GetOutPut());
CDW1.Run();
CDW1.Display();
return;
//cExtendedList Pos = new cExtendedList();
//cWell TempWell;
//int NumberOfPlates = cGlobalInfo.PlateListWindow.listBoxPlateNameToProcess.Items.Count;
//// loop on all the plate
//for (int PlateIdx = 0; PlateIdx < NumberOfPlates; PlateIdx++)
//{
// cPlate CurrentPlateToProcess = cGlobalInfo.CurrentScreening.ListPlatesActive.GetPlate((string)cGlobalInfo.PlateListWindow.listBoxPlateNameToProcess.Items[PlateIdx]);
// for (int row = 0; row < cGlobalInfo.CurrentScreening.Rows; row++)
// for (int col = 0; col < cGlobalInfo.CurrentScreening.Columns; col++)
// {
// TempWell = CurrentPlateToProcess.GetWell(col, row, false);
// if (TempWell == null) continue;
// else
// {
// if (TempWell.GetClassIdx() == this.ClassForClassif)
// Pos.Add(TempWell.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptor].GetValue());
// }
// }
//}
//if (Pos.Count == 0)
//{
// MessageBox.Show("No well of class " + cGlobalInfo.CurrentScreening.SelectedClass + " selected !", "Error", MessageBoxButtons.OK, MessageBoxIcon.Error);
// return;
//}
//List<double[]> HistoPos = Pos.CreateHistogram((int)cGlobalInfo.OptionsWindow.numericUpDownHistoBin.Value);
//if (HistoPos == null) return;
//cWindowToDisplayHisto NewWindow = new cWindowToDisplayHisto(this.Parent, Pos);
//Series SeriesPos = new Series();
//SeriesPos.ShadowOffset = 1;
//if (HistoPos.Count == 0) return;
//for (int IdxValue = 0; IdxValue < HistoPos[0].Length; IdxValue++)
//{
// SeriesPos.Points.AddXY(HistoPos[0][IdxValue], HistoPos[1][IdxValue]);
// SeriesPos.Points[IdxValue].ToolTip = HistoPos[1][IdxValue].ToString();
// if (this.ClassForClassif == -1)
// SeriesPos.Points[IdxValue].Color = Color.Black;
// else
// SeriesPos.Points[IdxValue].Color = cGlobalInfo.ListWellClasses[this.ClassForClassif].ColourForDisplay;
//}
//ChartArea CurrentChartArea = new ChartArea();
//CurrentChartArea.BorderColor = Color.Black;
//NewWindow.chartForSimpleForm.ChartAreas.Add(CurrentChartArea);
//CurrentChartArea.Axes[0].MajorGrid.Enabled = false;
//CurrentChartArea.Axes[0].Title = cGlobalInfo.CurrentScreening.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptor].GetName();
//CurrentChartArea.Axes[1].Title = "Sum";
//CurrentChartArea.AxisX.LabelStyle.Format = "N2";
//NewWindow.chartForSimpleForm.TextAntiAliasingQuality = TextAntiAliasingQuality.High;
//CurrentChartArea.BackGradientStyle = GradientStyle.TopBottom;
//CurrentChartArea.BackColor = cGlobalInfo.OptionsWindow.panel1.BackColor;
//CurrentChartArea.BackSecondaryColor = Color.White;
//SeriesPos.ChartType = SeriesChartType.Column;
//// SeriesPos.Color = cGlobalInfo.CurrentScreening.GetColor(1);
//NewWindow.chartForSimpleForm.Series.Add(SeriesPos);
//NewWindow.chartForSimpleForm.ChartAreas[0].CursorX.IsUserEnabled = true;
//NewWindow.chartForSimpleForm.ChartAreas[0].CursorX.IsUserSelectionEnabled = true;
//NewWindow.chartForSimpleForm.ChartAreas[0].AxisX.ScaleView.Zoomable = true;
//NewWindow.chartForSimpleForm.ChartAreas[0].AxisX.ScrollBar.IsPositionedInside = true;
//StripLine AverageLine = new StripLine();
//AverageLine.BackColor = Color.Red;
//AverageLine.IntervalOffset = this.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptor].GetValue();
//AverageLine.StripWidth = 0.0001;
//AverageLine.Text = String.Format("{0:0.###}", this.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptor].GetValue());
//CurrentChartArea.AxisX.StripLines.Add(AverageLine);
//if (cGlobalInfo.OptionsWindow.checkBoxDisplayHistoStats.Checked)
//{
// StripLine NAverageLine = new StripLine();
// NAverageLine.BackColor = Color.Black;
// NAverageLine.IntervalOffset = Pos.Mean();
// NAverageLine.StripWidth = 0.0001;// double.Epsilon;
// CurrentChartArea.AxisX.StripLines.Add(NAverageLine);
// NAverageLine.Text = String.Format("{0:0.###}", NAverageLine.IntervalOffset);
// StripLine StdLine = new StripLine();
// StdLine.BackColor = Color.FromArgb(64, Color.Black);
// double Std = Pos.Std();
// StdLine.IntervalOffset = NAverageLine.IntervalOffset - 0.5 * Std;
// StdLine.StripWidth = Std;
// CurrentChartArea.AxisX.StripLines.Add(StdLine);
// //NAverageLine.StripWidth = 0.01;
//}
//Title CurrentTitle = new Title(this.StateForClassif + " - " + cGlobalInfo.CurrentScreening.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptor].GetName() + " histogram.");
//CurrentTitle.Font = new System.Drawing.Font("Arial", 11, FontStyle.Bold);
//NewWindow.chartForSimpleForm.Titles.Add(CurrentTitle);
//NewWindow.Text = CurrentTitle.Text;
//NewWindow.Show();
//NewWindow.chartForSimpleForm.Update();
//NewWindow.chartForSimpleForm.Show();
//NewWindow.Controls.AddRange(new System.Windows.Forms.Control[] { NewWindow.chartForSimpleForm });
//return;
}
