public ALKForNSCLCByFISHResultPage(YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder alkForNSCLCByFISHTestOrder,
YellowstonePathology.Business.Test.AccessionOrder accessionOrder,
YellowstonePathology.Business.User.SystemIdentity systemIdentity)
{
this.m_PanelSetOrder = alkForNSCLCByFISHTestOrder;
this.m_AccessionOrder = accessionOrder;
this.m_SystemIdentity = systemIdentity;
this.m_ResultCollection = new Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHResultCollection();
this.m_PageHeaderText = "ALK Results For: " + this.m_AccessionOrder.PatientDisplayName;
YellowstonePathology.Business.Specimen.Model.SpecimenOrder specimenOrder = this.m_AccessionOrder.SpecimenOrderCollection.GetSpecimenOrderByOrderTarget(this.m_PanelSetOrder.OrderedOnId);
YellowstonePathology.Business.Test.AliquotOrder aliquotOrder = this.m_AccessionOrder.SpecimenOrderCollection.GetAliquotOrder(this.m_PanelSetOrder.OrderedOnId);
this.m_OrderedOnDescription = specimenOrder.Description;
if (aliquotOrder != null)
{
this.m_OrderedOnDescription += ": " + aliquotOrder.Label;
}
InitializeComponent();
DataContext = this;
this.m_ParentWindow = Window.GetWindow(this);
Loaded += ALKForNSCLCByFISHResultPage_Loaded;
Unloaded += ALKForNSCLCByFISHResultPage_Unloaded;
}
public ALKForNSCLCByFISHResultPage(YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder alkForNSCLCByFISHTestOrder,
YellowstonePathology.Business.Test.AccessionOrder accessionOrder,
YellowstonePathology.Business.User.SystemIdentity systemIdentity)
{
this.m_PanelSetOrder = alkForNSCLCByFISHTestOrder;
this.m_AccessionOrder = accessionOrder;
this.m_SystemIdentity = systemIdentity;
this.m_ResultCollection = new Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHResultCollection();
this.m_PageHeaderText = "ALK Results For: " + this.m_AccessionOrder.PatientDisplayName;
YellowstonePathology.Business.Specimen.Model.SpecimenOrder specimenOrder = this.m_AccessionOrder.SpecimenOrderCollection.GetSpecimenOrderByOrderTarget(this.m_PanelSetOrder.OrderedOnId);
YellowstonePathology.Business.Test.AliquotOrder aliquotOrder = this.m_AccessionOrder.SpecimenOrderCollection.GetAliquotOrder(this.m_PanelSetOrder.OrderedOnId);
this.m_OrderedOnDescription = specimenOrder.Description;
if(aliquotOrder != null) this.m_OrderedOnDescription += ": " + aliquotOrder.Label;
InitializeComponent();
DataContext = this;
this.m_ParentWindow = Window.GetWindow(this);
Loaded += ALKForNSCLCByFISHResultPage_Loaded;
Unloaded += ALKForNSCLCByFISHResultPage_Unloaded;
}
public ALKForNSCLCByFISHResultPage(YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder alkForNSCLCByFISHTestOrder,
YellowstonePathology.Business.Test.AccessionOrder accessionOrder,
YellowstonePathology.Business.User.SystemIdentity systemIdentity) : base(alkForNSCLCByFISHTestOrder, accessionOrder)
{
this.m_PanelSetOrder = alkForNSCLCByFISHTestOrder;
this.m_AccessionOrder = accessionOrder;
this.m_SystemIdentity = systemIdentity;
this.m_PageHeaderText = "ALK Results For: " + this.m_AccessionOrder.PatientDisplayName;
YellowstonePathology.Business.Specimen.Model.SpecimenOrder specimenOrder = this.m_AccessionOrder.SpecimenOrderCollection.GetSpecimenOrderByOrderTarget(this.m_PanelSetOrder.OrderedOnId);
YellowstonePathology.Business.Test.AliquotOrder aliquotOrder = this.m_AccessionOrder.SpecimenOrderCollection.GetAliquotOrder(this.m_PanelSetOrder.OrderedOnId);
this.m_OrderedOnDescription = specimenOrder.Description;
if (aliquotOrder != null)
{
this.m_OrderedOnDescription += ": " + aliquotOrder.Label;
}
InitializeComponent();
DataContext = this;
this.m_ParentWindow = Window.GetWindow(this);
this.m_ControlsNotDisabledOnFinal.Add(this.ButtonNext);
this.m_ControlsNotDisabledOnFinal.Add(this.TextBlockShowDocument);
this.m_ControlsNotDisabledOnFinal.Add(this.TextBlockUnfinalResults);
}
public ALKForNSCLCByFISHResultPath(string reportNo,
YellowstonePathology.Business.Test.AccessionOrder accessionOrder,
YellowstonePathology.UI.Navigation.PageNavigator pageNavigator,
System.Windows.Window window)
: base(pageNavigator, window)
{
this.m_AccessionOrder = accessionOrder;
this.m_TestOrder = (YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder) this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(reportNo);
}
public virtual void SetResult(YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder testOrder)
{
testOrder.ResultCode = this.m_ResultCode;
testOrder.Result = this.m_Result;
testOrder.Interpretation = this.m_Interpretation;
testOrder.Method = this.m_Method;
testOrder.ReferenceRange = this.m_ReferenceRange;
testOrder.References = this.m_References;
testOrder.ProbeSetDetail = this.m_ProbeSetDetail;
testOrder.ReportDisclaimer = testOrder.GetLocationPerformedComment();
}
public void Clear(YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder testOrder)
{
testOrder.ResultCode = null;
testOrder.Result = null;
testOrder.Interpretation = null;
testOrder.ReferenceRange = null;
testOrder.Method = null;
testOrder.References = null;
testOrder.ProbeSetDetail = null;
testOrder.ReportDisclaimer = null;
}
public EGFRToALKReflexPage(YellowstonePathology.Business.Test.EGFRToALKReflexAnalysis.EGFRToALKReflexAnalysisTestOrder testOrder,
YellowstonePathology.Business.Test.AccessionOrder accessionOrder,
YellowstonePathology.Business.User.SystemIdentity systemIdentity,
System.Windows.Visibility backButtonVisibility)
: base(testOrder, accessionOrder)
{
this.m_AccessionOrder = accessionOrder;
this.m_SystemIdentity = systemIdentity;
this.m_BackButtonVisibility = backButtonVisibility;
this.m_EGFRToALKReflexAnalysisTestOrder = testOrder;
this.m_EGFRToALKReflexAnalysisTestOrder.SetStatus(this.m_AccessionOrder.PanelSetOrderCollection);
this.m_EGFRMutationAnalysisTestOrder = (YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder)this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(60);
if (this.m_AccessionOrder.PanelSetOrderCollection.Exists(131) == true)
{
this.m_ALKForNSCLCByFISHTestOrder = (YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder)this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(131);
}
else if(this.m_AccessionOrder.PanelSetOrderCollection.Exists(68) == true)
{
this.m_ALKForNSCLCByFISHTestOrder = new YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder();
}
this.m_PageHeaderText = this.m_EGFRToALKReflexAnalysisTestOrder.PanelSetName + " for: " + this.m_AccessionOrder.PatientDisplayName;
YellowstonePathology.Business.Specimen.Model.SpecimenOrder specimenOrder = this.m_AccessionOrder.SpecimenOrderCollection.GetSpecimenOrderByOrderTarget(this.m_EGFRToALKReflexAnalysisTestOrder.OrderedOnId);
YellowstonePathology.Business.Test.AliquotOrder aliquotOrder = this.m_AccessionOrder.SpecimenOrderCollection.GetAliquotOrder(this.m_EGFRToALKReflexAnalysisTestOrder.OrderedOnId);
this.m_OrderedOnDescription = specimenOrder.Description;
if (aliquotOrder != null) this.m_OrderedOnDescription += ": " + aliquotOrder.Label;
this.m_EGFRToALKReflexAnalysisResult = new Business.Test.EGFRToALKReflexAnalysis.EGFRToALKReflexAnalysisResult(this.m_AccessionOrder, this.m_EGFRToALKReflexAnalysisTestOrder);
InitializeComponent();
this.DataContext = this;
this.m_ControlsNotDisabledOnFinal.Add(this.ButtonBack);
this.m_ControlsNotDisabledOnFinal.Add(this.ButtonFinish);
this.m_ControlsNotDisabledOnFinal.Add(this.TextBlockShowDocument);
this.m_ControlsNotDisabledOnFinal.Add(this.TextBlockUnfinalResults);
}
public EGFRToALKReflexPage(YellowstonePathology.Business.Test.EGFRToALKReflexAnalysis.EGFRToALKReflexAnalysisTestOrder testOrder,
YellowstonePathology.Business.Test.AccessionOrder accessionOrder,
YellowstonePathology.Business.User.SystemIdentity systemIdentity,
System.Windows.Visibility backButtonVisibility) : base(testOrder, accessionOrder)
{
this.m_AccessionOrder = accessionOrder;
this.m_SystemIdentity = systemIdentity;
this.m_BackButtonVisibility = backButtonVisibility;
this.m_EGFRToALKReflexAnalysisTestOrder = testOrder;
this.m_EGFRToALKReflexAnalysisTestOrder.SetStatus(this.m_AccessionOrder.PanelSetOrderCollection);
this.m_EGFRMutationAnalysisTestOrder = (YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder) this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(60);
if (this.m_AccessionOrder.PanelSetOrderCollection.Exists(131) == true)
{
this.m_ALKForNSCLCByFISHTestOrder = (YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder) this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(131);
}
else if (this.m_AccessionOrder.PanelSetOrderCollection.Exists(68) == true)
{
this.m_ALKForNSCLCByFISHTestOrder = new YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder();
}
this.m_PageHeaderText = this.m_EGFRToALKReflexAnalysisTestOrder.PanelSetName + " for: " + this.m_AccessionOrder.PatientDisplayName;
YellowstonePathology.Business.Specimen.Model.SpecimenOrder specimenOrder = this.m_AccessionOrder.SpecimenOrderCollection.GetSpecimenOrderByOrderTarget(this.m_EGFRToALKReflexAnalysisTestOrder.OrderedOnId);
YellowstonePathology.Business.Test.AliquotOrder aliquotOrder = this.m_AccessionOrder.SpecimenOrderCollection.GetAliquotOrder(this.m_EGFRToALKReflexAnalysisTestOrder.OrderedOnId);
this.m_OrderedOnDescription = specimenOrder.Description;
if (aliquotOrder != null)
{
this.m_OrderedOnDescription += ": " + aliquotOrder.Label;
}
InitializeComponent();
this.DataContext = this;
this.m_ControlsNotDisabledOnFinal.Add(this.ButtonBack);
this.m_ControlsNotDisabledOnFinal.Add(this.ButtonFinish);
this.m_ControlsNotDisabledOnFinal.Add(this.TextBlockShowDocument);
this.m_ControlsNotDisabledOnFinal.Add(this.TextBlockUnfinalResults);
}
public override void Render()
{
this.m_TemplateName = @"\\CFileServer\Documents\ReportTemplates\XmlTemplates\ALKForNSCLCByFISH.1.xml";
base.OpenTemplate();
this.SetDemographicsV2();
this.SetReportDistribution();
this.SetCaseHistory();
YellowstonePathology.Business.Amendment.Model.AmendmentCollection amendmentCollection = this.m_AccessionOrder.AmendmentCollection.GetAmendmentsForReport(m_PanelSetOrder.ReportNo);
Document.AmendmentSection amendmentSection = new Document.AmendmentSection();
amendmentSection.SetAmendment(amendmentCollection, this.m_ReportXml, this.m_NameSpaceManager, true);
YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder alkForNSCLCByFISHTestOrder = (YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder) this.m_PanelSetOrder;
YellowstonePathology.Business.Test.AliquotOrder aliquotOrder = this.m_AccessionOrder.SpecimenOrderCollection.GetAliquotOrder(alkForNSCLCByFISHTestOrder.OrderedOnId);
YellowstonePathology.Business.Specimen.Model.SpecimenOrder specimenOrder = this.m_AccessionOrder.SpecimenOrderCollection.GetSpecimenOrder(alkForNSCLCByFISHTestOrder.OrderedOn, alkForNSCLCByFISHTestOrder.OrderedOnId);
string specimenDescription = specimenOrder.Description;
if (aliquotOrder != null)
{
specimenDescription += ", Block " + aliquotOrder.Label;
}
this.ReplaceText("specimen_description", specimenDescription);
string collectionDateTimeString = YellowstonePathology.Business.Helper.DateTimeExtensions.CombineDateAndTime(specimenOrder.CollectionDate, specimenOrder.CollectionTime);
this.SetXmlNodeData("date_time_collected", collectionDateTimeString);
this.SetXMLNodeParagraphData("report_result", alkForNSCLCByFISHTestOrder.Result);
this.SetXMLNodeParagraphData("report_interpretation", alkForNSCLCByFISHTestOrder.Interpretation);
this.SetXMLNodeParagraphData("report_references", alkForNSCLCByFISHTestOrder.ReportReferences);
this.SetXMLNodeParagraphData("reference_range", alkForNSCLCByFISHTestOrder.ReferenceRange);
this.SetXMLNodeParagraphData("nuclei_scored", alkForNSCLCByFISHTestOrder.NucleiScored);
this.SetXMLNodeParagraphData("tumor_nuclei_percentage", alkForNSCLCByFISHTestOrder.TumorNucleiPercentage);
this.SetXMLNodeParagraphData("probeset_details", alkForNSCLCByFISHTestOrder.ProbeSetDetail);
this.SetXMLNodeParagraphData("report_method", alkForNSCLCByFISHTestOrder.Method);
this.ReplaceText("report_date", BaseData.GetShortDateString(this.m_PanelSetOrder.ReferenceLabFinalDate));
this.ReplaceText("pathologist_signature", this.m_PanelSetOrder.ReferenceLabSignature);
string locationPerformed = this.m_PanelSetOrder.GetLocationPerformedComment();
this.ReplaceText("report_disclaimer", locationPerformed);
this.SaveReport();
}
public override string ToResultString(Business.Test.AccessionOrder accessionOrder)
{
StringBuilder result = new StringBuilder();
result.AppendLine("EGFR Mutation Analysis");
YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTest egfrMutationAnalysisTest = new YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTest();
if (accessionOrder.PanelSetOrderCollection.Exists(egfrMutationAnalysisTest.PanelSetId) == true)
{
YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder egfrMutationAnalysisTestOrder = (YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(60);
result.AppendLine(egfrMutationAnalysisTestOrder.ToResultString(accessionOrder));
}
result.AppendLine();
result.AppendLine("ALK For NSCLC By FISH");
YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTest alkForNSCLCByFISHTest = new ALKForNSCLCByFISH.ALKForNSCLCByFISHTest();
if (accessionOrder.PanelSetOrderCollection.Exists(alkForNSCLCByFISHTest.PanelSetId) == true)
{
YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder alkForNSCLCByFISHTestOrder = (YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(131);
result.AppendLine(alkForNSCLCByFISHTestOrder.ToResultString(accessionOrder));
}
result.AppendLine();
result.AppendLine("Interpretation:");
result.AppendLine(this.m_Interpretation);
result.AppendLine();
return(result.ToString());
}
public EGFRToALKReflexAnalysisALKResult(YellowstonePathology.Business.Test.AccessionOrder accessionOrder,
YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisResult egfrMutationAnalysisResult,
YellowstonePathology.Business.Test.EGFRToALKReflexAnalysis.EGFRToALKReflexAnalysisTestOrder egfrToALKReflexAnalysisTestOrder)
: base(accessionOrder, 131)
{
if (egfrToALKReflexAnalysisTestOrder.QNSForALK == true)
{
this.m_Status = EGFRToALKReflexAnalysisElementStatusEnum.QNS;
}
else
{
if (egfrMutationAnalysisResult != null)
{
YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisDetectedResult egfrMutationAnalysisDetectedResult = new EGFRMutationAnalysis.EGFRMutationAnalysisDetectedResult();
if (egfrMutationAnalysisResult.ResultCode == egfrMutationAnalysisDetectedResult.ResultCode)
{
this.m_Status = EGFRToALKReflexAnalysisElementStatusEnum.NotIndicated;
}
else
{
if (this.m_Ordered == false)
{
this.m_Status = EGFRToALKReflexAnalysisElementStatusEnum.OrderRequired;
}
else if (this.m_Final == true)
{
YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHResultCollection alkForNSCLCByFISHResultCollection = new ALKForNSCLCByFISH.ALKForNSCLCByFISHResultCollection();
YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder alkForNSCLCByFISHTestOrder = (YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder) this.m_PanelSetOrder;
this.m_ResultAbbreviation = alkForNSCLCByFISHResultCollection.GetByResultCode(alkForNSCLCByFISHTestOrder.ResultCode).ResultAbbreviation;
}
}
}
else
{
this.m_Status = EGFRToALKReflexAnalysisElementStatusEnum.Pending;
}
}
}
public override void ToXml(XElement document)
{
YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder panelSetOrder = (YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder) this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(this.m_ReportNo);
this.AddHeader(document, panelSetOrder, "ALK Rearrangement Analysis");
this.AddNextObxElement("", document, "F");
string result = "Result: " + panelSetOrder.Result;
this.AddNextObxElement(result, document, "F");
this.AddNextObxElement("", document, "F");
this.AddNextObxElement("Pathologist: " + panelSetOrder.Signature, document, "F");
if (panelSetOrder.FinalTime.HasValue == true)
{
this.AddNextObxElement("E-signed " + panelSetOrder.FinalTime.Value.ToString("MM/dd/yyyy HH:mm"), document, "F");
}
this.AddNextObxElement("", document, "F");
this.AddAmendments(document);
this.AddNextObxElement("Specimen Information:", document, "F");
YellowstonePathology.Business.Specimen.Model.SpecimenOrder specimenOrder = this.m_AccessionOrder.SpecimenOrderCollection.GetSpecimenOrder(panelSetOrder.OrderedOn, panelSetOrder.OrderedOnId);
this.AddNextObxElement("Specimen Identification: " + specimenOrder.Description, document, "F");
string collectionDateTimeString = YellowstonePathology.Business.Helper.DateTimeExtensions.CombineDateAndTime(specimenOrder.CollectionDate, specimenOrder.CollectionTime);
this.AddNextObxElement("Collection Date/Time: " + collectionDateTimeString, document, "F");
this.AddNextObxElement("", document, "F");
this.AddNextObxElement("Interpretation:", document, "F");
this.HandleLongString(panelSetOrder.Interpretation, document, "F");
this.AddNextObxElement("", document, "F");
this.AddNextObxElement("Probe Set Details:", document, "F");
this.HandleLongString(panelSetOrder.ProbeSetDetail, document, "F");
this.AddNextObxElement("", document, "F");
this.AddNextObxElement("Nuclei Scored:", document, "F");
this.HandleLongString(panelSetOrder.NucleiScored, document, "F");
this.AddNextObxElement("", document, "F");
string locationPerformed = panelSetOrder.GetLocationPerformedComment();
this.AddNextObxElement(locationPerformed, document, "F");
this.AddNextObxElement(string.Empty, document, "F");
}
public override void Render()
{
this.m_TemplateName = @"\\CFileServer\Documents\ReportTemplates\XmlTemplates\EGFRToALKReflexAnalysis.4.xml";
this.OpenTemplate();
this.SetDemographicsV2();
this.SetReportDistribution();
YellowstonePathology.Business.Test.EGFRToALKReflexAnalysis.EGFRToALKReflexAnalysisTestOrder egfrToALKReflexAnalysisTestOrder = (YellowstonePathology.Business.Test.EGFRToALKReflexAnalysis.EGFRToALKReflexAnalysisTestOrder) this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(124);
base.ReplaceText("report_title", egfrToALKReflexAnalysisTestOrder.PanelSetName);
YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder egfrMutationAnalysisTestOrder = (YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder) this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(60);
base.ReplaceText("egfr_result", egfrMutationAnalysisTestOrder.Result);
base.SetXMLNodeParagraphData("egfr_comment", egfrMutationAnalysisTestOrder.Comment);
YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisDetectedResult egfrMutationAnalysisDetectedResult = new EGFRMutationAnalysis.EGFRMutationAnalysisDetectedResult();
if (egfrMutationAnalysisTestOrder.ResultCode == egfrMutationAnalysisDetectedResult.ResultCode)
{
base.ReplaceText("alk_result", "Not Indicated");
base.ReplaceText("ros1_result", "Not Indicated");
base.ReplaceText("pdl1_result", "Not Indicated");
}
if (this.m_AccessionOrder.PanelSetOrderCollection.Exists(131) == true)
{
YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder alkForNSCLCByFISHTestOrder = (YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder) this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(131);
base.ReplaceText("alk_result", alkForNSCLCByFISHTestOrder.Result);
}
else if (this.m_AccessionOrder.PanelSetOrderCollection.Exists(68) == true)
{
YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrderReportedSeparately alkForNSCLCByFISHTestOrderReportedSeparately = new YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrderReportedSeparately();
base.ReplaceText("alk_result", alkForNSCLCByFISHTestOrderReportedSeparately.Result);
}
else if (egfrToALKReflexAnalysisTestOrder.QNSForALK == true)
{
base.ReplaceText("alk_result", "Quantity not sufficient to perform ALK");
}
else
{
base.ReplaceText("alk_result", "ALK not performed");
}
if (this.m_AccessionOrder.PanelSetOrderCollection.Exists(204) == true)
{
YellowstonePathology.Business.Test.ROS1ByFISH.ROS1ByFISHTestOrder ros1ByFISHTestOrder = (YellowstonePathology.Business.Test.ROS1ByFISH.ROS1ByFISHTestOrder) this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(204);
base.ReplaceText("ros1_result", ros1ByFISHTestOrder.Result);
}
if (this.m_AccessionOrder.PanelSetOrderCollection.Exists(215) == true)
{
YellowstonePathology.Business.Test.PDL1.PDL1TestOrder pdl1TestOrder = (YellowstonePathology.Business.Test.PDL1.PDL1TestOrder) this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(215);
base.ReplaceText("pdl1_result", pdl1TestOrder.Result);
}
if (egfrToALKReflexAnalysisTestOrder.QNSForPDL1 == true)
{
base.ReplaceText("pdl1_result", "Quantity not sufficient to perform PDL-1");
}
base.SetXMLNodeParagraphData("report_interpretation", egfrToALKReflexAnalysisTestOrder.Interpretation);
this.ReplaceText("report_date", BaseData.GetShortDateString(egfrToALKReflexAnalysisTestOrder.FinalDate));
this.ReplaceText("pathologist_signature", egfrToALKReflexAnalysisTestOrder.Signature);
this.SetXMLNodeParagraphData("report_method", egfrToALKReflexAnalysisTestOrder.Method);
this.SetXMLNodeParagraphData("report_references", egfrToALKReflexAnalysisTestOrder.References);
YellowstonePathology.Business.Test.AliquotOrder aliquotOrder = this.m_AccessionOrder.SpecimenOrderCollection.GetAliquotOrder(egfrToALKReflexAnalysisTestOrder.OrderedOnId);
YellowstonePathology.Business.Specimen.Model.SpecimenOrder specimenOrder = this.m_AccessionOrder.SpecimenOrderCollection.GetSpecimenOrder(egfrToALKReflexAnalysisTestOrder.OrderedOn, egfrMutationAnalysisTestOrder.OrderedOnId);
string specimenDescription = specimenOrder.Description + ", Block " + aliquotOrder.Label;
this.ReplaceText("specimen_description", specimenDescription);
string collectionDateTimeString = YellowstonePathology.Business.Helper.DateTimeExtensions.CombineDateAndTime(specimenOrder.CollectionDate, specimenOrder.CollectionTime);
this.SetXmlNodeData("date_time_collected", collectionDateTimeString);
this.ReplaceText("tumor_nuclei_percentage", egfrToALKReflexAnalysisTestOrder.TumorNucleiPercentage);
this.SaveReport();
}
public void SetResults(YellowstonePathology.Business.Test.AccessionOrder accessionOrder)
{
StringBuilder interpretation = new StringBuilder();
StringBuilder method = new StringBuilder();
StringBuilder references = new StringBuilder();
if (accessionOrder.PanelSetOrderCollection.Exists(60) == true)
{
YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder egfrMutationAnalysisTestOrder = (YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(60);
interpretation.AppendLine("EGFR: " + egfrMutationAnalysisTestOrder.Interpretation);
references.AppendLine("EGFR: " + egfrMutationAnalysisTestOrder.References);
method.AppendLine("EGFR: " + egfrMutationAnalysisTestOrder.Method);
}
if (accessionOrder.PanelSetOrderCollection.Exists(131) == true)
{
YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder alkForNSCLCByFISHTestOrder = (YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(131);
references.AppendLine();
references.AppendLine("ALK: " + alkForNSCLCByFISHTestOrder.References);
interpretation.AppendLine();
interpretation.AppendLine("ALK: " + alkForNSCLCByFISHTestOrder.Interpretation);
method.AppendLine();
method.AppendLine("ALK: " + alkForNSCLCByFISHTestOrder.Method);
}
if (accessionOrder.PanelSetOrderCollection.Exists(204) == true)
{
YellowstonePathology.Business.Test.ROS1ByFISH.ROS1ByFISHTestOrder ros1ByFISHTestOrder = (YellowstonePathology.Business.Test.ROS1ByFISH.ROS1ByFISHTestOrder)accessionOrder.PanelSetOrderCollection.GetPanelSetOrder(204);
//references.AppendLine();
//references.AppendLine("ROS1: " + ros1ByFISHTestOrder.References);
interpretation.AppendLine();
interpretation.AppendLine("ROS1: " + ros1ByFISHTestOrder.Interpretation);
method.AppendLine();
method.AppendLine("ROS1: " + ros1ByFISHTestOrder.Method);
}
char[] lineFeedCharacters = { '\r', '\n' };
this.Interpretation = interpretation.ToString().TrimEnd(lineFeedCharacters);
this.Method = method.ToString().TrimEnd(lineFeedCharacters);
this.References = references.ToString().TrimEnd(lineFeedCharacters);
}
public override void ToXml(XElement document)
{
YellowstonePathology.Business.Test.EGFRToALKReflexAnalysis.EGFRToALKReflexAnalysisTestOrder egfrToALKReflexAnalysisTestOrder = (YellowstonePathology.Business.Test.EGFRToALKReflexAnalysis.EGFRToALKReflexAnalysisTestOrder) this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(this.m_ReportNo);
YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder egfrMutationAnalysisTestOrder = (YellowstonePathology.Business.Test.EGFRMutationAnalysis.EGFRMutationAnalysisTestOrder) this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(60);
this.AddHeader(document, egfrToALKReflexAnalysisTestOrder, egfrToALKReflexAnalysisTestOrder.PanelSetName);
this.AddNextObxElement("", document, "F");
this.AddNextObxElement("EGFR Mutation Analysis: " + egfrMutationAnalysisTestOrder.Result, document, "F");
this.AddNextObxElement("", document, "F");
this.AddNextObxElement("Comment: ", document, "F");
this.HandleLongString(egfrMutationAnalysisTestOrder.Comment, document, "F");
this.AddNextObxElement("", document, "F");
string alkResult = "ALK not performed";
if (this.m_AccessionOrder.PanelSetOrderCollection.Exists(131) == true)
{
YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder alkFoNSCLCByFISHTestOrder = (YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder) this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(131);
alkResult = alkFoNSCLCByFISHTestOrder.Result;
}
else if (this.m_AccessionOrder.PanelSetOrderCollection.Exists(68) == true)
{
YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrder alkForNSCLCByFISHTestOrderReportedSeparately = new YellowstonePathology.Business.Test.ALKForNSCLCByFISH.ALKForNSCLCByFISHTestOrderReportedSeparately();
alkResult = alkForNSCLCByFISHTestOrderReportedSeparately.Result;
}
this.AddNextObxElement("ALK Rearrangement Analysis: " + alkResult, document, "F");
this.AddNextObxElement("", document, "F");
string ros1Result = null;
if (this.m_AccessionOrder.PanelSetOrderCollection.Exists(204) == true)
{
YellowstonePathology.Business.Test.ROS1ByFISH.ROS1ByFISHTestOrder ros1ByFISHTestOrder = (YellowstonePathology.Business.Test.ROS1ByFISH.ROS1ByFISHTestOrder) this.m_AccessionOrder.PanelSetOrderCollection.GetPanelSetOrder(204);
ros1Result = ros1ByFISHTestOrder.Result;
}
this.AddNextObxElement("ROS1 Rearrangement Analysis: " + ros1Result, document, "F");
this.AddNextObxElement("", document, "F");
this.AddNextObxElement("Pathologist: " + egfrToALKReflexAnalysisTestOrder.Signature, document, "F");
if (egfrToALKReflexAnalysisTestOrder.FinalTime.HasValue == true)
{
this.AddNextObxElement("E-signed " + egfrToALKReflexAnalysisTestOrder.FinalTime.Value.ToString("MM/dd/yyyy HH:mm"), document, "F");
}
this.AddNextObxElement("", document, "F");
this.AddAmendments(document);
this.AddNextObxElement("Interpretation: ", document, "F");
this.HandleLongString(egfrToALKReflexAnalysisTestOrder.Interpretation, document, "F");
this.AddNextObxElement("", document, "F");
this.AddNextObxElement("Method: ", document, "F");
this.HandleLongString(egfrToALKReflexAnalysisTestOrder.Method, document, "F");
this.AddNextObxElement("", document, "F");
this.AddNextObxElement("References: ", document, "F");
this.HandleLongString(egfrToALKReflexAnalysisTestOrder.References, document, "F");
this.AddNextObxElement("", document, "F");
this.AddNextObxElement(egfrToALKReflexAnalysisTestOrder.GetLocationPerformedComment(), document, "F");
this.AddNextObxElement(string.Empty, document, "F");
}