public List <EntityStoreItem> GetVersionsById(long id)
        {
            DatasetManager         dm  = new DatasetManager();
            List <EntityStoreItem> tmp = new List <EntityStoreItem>();

            try
            {
                var datasetIds    = dm.GetDatasetLatestIds();
                var datasetHelper = new XmlDatasetHelper();
                var versions      = dm.GetDataset(id).Versions.OrderBy(v => v.Timestamp).ToList();

                foreach (var v in versions)
                {
                    tmp.Add(new EntityStoreItem()
                    {
                        Id            = v.Id,
                        Title         = datasetHelper.GetInformationFromVersion(v.Id, NameAttributeValues.title),
                        Version       = versions.IndexOf(v) + 1,
                        CommitComment = "(" + v.Timestamp.ToString("dd.MM.yyyy HH:mm") + "): " + v.ChangeDescription
                    });
                }

                return(tmp);
            }
            catch (Exception ex)
            {
                return(tmp);
            }
            finally
            {
                dm.Dispose();
            }
        }
Beispiel #2
0
        public static GFBIOPangaeaFormularObject GetGFBIOPangaeaFormularObject(long datasetId)
        {
            DatasetManager datasetManager = new DatasetManager();

            try
            {
                Dataset        dataset        = datasetManager.GetDataset(datasetId);
                DatasetVersion datasetVersion = datasetManager.GetDatasetLatestVersion(datasetId);

                MetadataStructureManager metadataStructureManager = new MetadataStructureManager();
                MetadataStructure        metadataStructure        = metadataStructureManager.Repo.Get(dataset.MetadataStructure.Id);

                GFBIOPangaeaFormularObject gfbioPangaeaFormularObject = new GFBIOPangaeaFormularObject();

                XmlDatasetHelper xmlDatasetHelper = new XmlDatasetHelper();

                string title       = xmlDatasetHelper.GetInformation(datasetId, NameAttributeValues.title);
                string description = xmlDatasetHelper.GetInformation(datasetId, NameAttributeValues.description);

                return(gfbioPangaeaFormularObject);
            }
            finally
            {
                datasetManager.Dispose();
            }
        }
Beispiel #3
0
        private void generateMetadataHtml(DatasetVersion dsv)
        {
            XmlDatasetHelper xmlDatasetHelper    = new XmlDatasetHelper();
            long             datasetId           = dsv.Dataset.Id;
            long             metadatastructureId = dsv.Dataset.MetadataStructure.Id;
            long             datastructureId     = dsv.Dataset.DataStructure.Id;
            long             researchplanId      = dsv.Dataset.ResearchPlan.Id;

            string title = dsv.Title;

            Session["ShowDataMetadata"] = dsv.Metadata;

            var view = this.Render("DCM", "Form", "LoadMetadataOfflineVersion", new RouteValueDictionary()
            {
                { "entityId", datasetId },
                { "title", title },
                { "metadatastructureId", metadatastructureId },
                { "datastructureId", datastructureId },
                { "researchplanId", researchplanId },
                { "sessionKeyForMetadata", "ShowDataMetadata" },
                { "resetTaskManager", false }
            });

            byte[] content = Encoding.ASCII.GetBytes(view.ToString());

            string dynamicPathOfMD = "";

            dynamicPathOfMD = storeGeneratedFilePathToContentDiscriptor(datasetId, dsv,
                                                                        "metadata", ".html");
            string metadataFilePath = AsciiWriter.CreateFile(dynamicPathOfMD);

            AsciiWriter.AllTextToFile(metadataFilePath, view.ToString());
        }
Beispiel #4
0
        public List <ListItem> GetMetadataStructureList()
        {
            MetadataStructureManager metadataStructureManager = new MetadataStructureManager();
            XmlDatasetHelper         xmlDatasetHelper         = new XmlDatasetHelper();

            try
            {
                IEnumerable <MetadataStructure> metadataStructureList = metadataStructureManager.Repo.Get();

                List <ListItem> temp = new List <ListItem>();

                foreach (MetadataStructure metadataStructure in metadataStructureList)
                {
                    if (xmlDatasetHelper.IsActive(metadataStructure.Id) &&
                        xmlDatasetHelper.HasEntityType(metadataStructure.Id, "BExIS.Emm.Entities.Event.Event"))
                    {
                        string title = metadataStructure.Name;

                        temp.Add(new ListItem(metadataStructure.Id, title));
                    }
                }

                return(temp.OrderBy(p => p.Name).ToList());
            }
            finally
            {
                metadataStructureManager.Dispose();
            }
        }
Beispiel #5
0
        public ActionResult CreateTestDatasets(int n)
        {
            DatasetManager           datasetManager           = new DatasetManager();
            DataStructureManager     dataStructureManager     = new DataStructureManager();
            MetadataStructureManager metadataStructureManager = new MetadataStructureManager();
            ResearchPlanManager      researchPlanManager      = new ResearchPlanManager();


            try
            {
                var structure         = dataStructureManager.UnStructuredDataStructureRepo.Get(1);
                var metadatastructure = metadataStructureManager.Repo.Get(1);
                var researchplan      = researchPlanManager.Repo.Get(1);
                var xmlDatasetHelper  = new XmlDatasetHelper();

                var xmlMetadatWriter = new XmlMetadataWriter(XmlNodeMode.xPath);
                var metadataXml      = xmlMetadatWriter.CreateMetadataXml(metadatastructure.Id);

                for (int i = 0; i < n; i++)
                {
                    var dataset = datasetManager.CreateEmptyDataset(structure, researchplan, metadatastructure);


                    if (datasetManager.IsDatasetCheckedOutFor(dataset.Id, "test") || datasetManager.CheckOutDataset(dataset.Id, "test"))
                    {
                        DatasetVersion workingCopy = datasetManager.GetDatasetWorkingCopy(dataset.Id);

                        datasetManager.EditDatasetVersion(workingCopy, null, null, null);
                        datasetManager.CheckInDataset(dataset.Id, "", "test", ViewCreationBehavior.None);


                        workingCopy.Metadata = Xml.Helpers.XmlWriter.ToXmlDocument(metadataXml);

                        string xpath = xmlDatasetHelper.GetInformationPath(metadatastructure.Id, NameAttributeValues.title);

                        workingCopy.Metadata.SelectSingleNode(xpath).InnerText = i.ToString();
                        workingCopy.Title = i.ToString();

                        datasetManager.EditDatasetVersion(workingCopy, null, null, null);
                        datasetManager.CheckInDataset(dataset.Id, "", "test", ViewCreationBehavior.None);
                    }
                }
            }
            catch (Exception ex)
            {
                throw ex;
            }
            finally
            {
                datasetManager.Dispose();
                dataStructureManager.Dispose();
                metadataStructureManager.Dispose();
                researchPlanManager.Dispose();
            }


            return(View("Index"));
        }
Beispiel #6
0
        public static string CreateConvertedMetadata(long datasetId, TransmissionType type)
        {
            XmlDocument              newXml;
            DatasetManager           datasetManager = new DatasetManager();
            MetadataStructureManager metadataMetadataStructureManager = new MetadataStructureManager();

            try
            {
                DatasetVersion    datasetVersion    = datasetManager.GetDatasetLatestVersion(datasetId);
                MetadataStructure metadataStructure = metadataMetadataStructureManager.Repo.Get(datasetVersion.Dataset.MetadataStructure.Id);
                XmlDatasetHelper  xmlDatasetHelper  = new XmlDatasetHelper();

                int    versionNr   = datasetManager.GetDatasetVersionNr(datasetVersion);
                string mappingName = metadataStructure.Name;

                string mappingFileName = xmlDatasetHelper.GetTransmissionInformation(datasetVersion.Id, type, mappingName);
                //if mapping file not exist
                if (string.IsNullOrEmpty(mappingFileName))
                {
                    return("");
                }
                string pathMappingFile = Path.Combine(AppConfiguration.GetModuleWorkspacePath("DIM"), mappingFileName);

                XmlMapperManager xmlMapperManager = new XmlMapperManager(TransactionDirection.InternToExtern);
                xmlMapperManager.Load(pathMappingFile, "exporttest");

                newXml = xmlMapperManager.Export(datasetVersion.Metadata, datasetVersion.Id, mappingName, true);

                string title = datasetVersion.Title;

                // store in content descriptor
                string filename = "metadata";
                if (String.IsNullOrEmpty(mappingName) || mappingName.ToLower() == "generic")
                {
                    storeGeneratedFilePathToContentDiscriptor(datasetId, datasetVersion, filename, ".xml");
                }
                else
                {
                    filename = "metadata_" + mappingName;
                    storeGeneratedFilePathToContentDiscriptor(datasetId, datasetVersion, filename,
                                                              ".xml");
                }

                return(OutputDatasetManager.GetDynamicDatasetStorePath(datasetId, versionNr, filename, ".xml"));
            }
            catch (Exception ex)
            {
                throw ex;
            }
            finally
            {
                datasetManager.Dispose();
                metadataMetadataStructureManager.Dispose();
            }
        }
Beispiel #7
0
        public static DatasetGridRowModel Convert(DatasetVersion datasetVersion, bool isPublic)
        {
            XmlDatasetHelper xmlDatasetHelper = new XmlDatasetHelper();

            return(new DatasetGridRowModel()
            {
                Id = datasetVersion.Dataset.Id,
                Title = datasetVersion.Title,
                IsPublic = isPublic
            });
        }
Beispiel #8
0
        public static DatasetGridRowModel Convert(DatasetVersion datasetVersion, bool isPublic)
        {
            XmlDatasetHelper xmlDatasetHelper = new XmlDatasetHelper();


            return(new DatasetGridRowModel()
            {
                Id = datasetVersion.Dataset.Id,
                Title = xmlDatasetHelper.GetInformationFromVersion(datasetVersion.Id, NameAttributeValues.title),
                IsPublic = isPublic
            });
        }
Beispiel #9
0
        public StructuredDataStructure GetDataStructureByID(long ID)
        {
            DataStructureManager    dsm = new DataStructureManager();
            StructuredDataStructure structuredDataStructure = dsm.StructuredDataStructureRepo.Get(ID);

            this.dataStructure = structuredDataStructure;

            if (this.dataStructure != null)
            {
                this.variables = getOrderedVariables(structuredDataStructure);

                if (this.dataStructure.Datasets == null)
                {
                    inUse = false;
                }
                else
                {
                    if (this.dataStructure.Datasets.Count > 0)
                    {
                        inUse = true;
                        DatasetListElement datasetListElement = new DatasetListElement();
                        DatasetManager     dm = new DatasetManager();
                        foreach (Dataset d in structuredDataStructure.Datasets)
                        {
                            if (dm.GetDatasetLatestMetadataVersion(d.Id) != null)
                            {
                                datasetListElement = new DatasetListElement(d.Id, XmlDatasetHelper.GetInformation(d, AttributeNames.title));
                            }
                            else
                            {
                                datasetListElement = new DatasetListElement(0, "");
                            }
                            datasets.Add(datasetListElement);
                        }
                    }
                    else
                    {
                        inUse = false;
                    }
                }
                this.BuildDataTable();
                return(structuredDataStructure);
            }
            else
            {
                this.dataStructure = new StructuredDataStructure();
                return(structuredDataStructure);
            }
        }
Beispiel #10
0
        public static XmlDocument GetConvertedMetadata(long datasetId, TransmissionType type, string mappingName, bool storing = true)
        {
            using (DatasetManager datasetManager = new DatasetManager())
            {
                XmlDocument newXml;

                try
                {
                    DatasetVersion   datasetVersion   = datasetManager.GetDatasetLatestVersion(datasetId);
                    XmlDatasetHelper xmlDatasetHelper = new XmlDatasetHelper();

                    string mappingFileName = xmlDatasetHelper.GetTransmissionInformation(datasetVersion.Id, type, mappingName);
                    // no mapping files with mappingName exist
                    if (string.IsNullOrEmpty(mappingFileName))
                    {
                        return(null);
                    }

                    string pathMappingFile = Path.Combine(AppConfiguration.GetModuleWorkspacePath("DIM"), mappingFileName);

                    XmlMapperManager xmlMapperManager = new XmlMapperManager(TransactionDirection.InternToExtern);
                    xmlMapperManager.Load(pathMappingFile, "exporttest");

                    newXml = xmlMapperManager.Export(datasetVersion.Metadata, datasetVersion.Id, mappingName, true);

                    string title = datasetVersion.Title;

                    // store in content descriptor
                    if (storing)
                    {
                        if (String.IsNullOrEmpty(mappingName) || mappingName.ToLower() == "generic")
                        {
                            storeGeneratedFilePathToContentDiscriptor(datasetId, datasetVersion, "metadata", ".xml");
                        }
                        else
                        {
                            storeGeneratedFilePathToContentDiscriptor(datasetId, datasetVersion, "metadata_" + mappingName, ".xml");
                        }
                    }
                }
                catch (Exception ex)
                {
                    throw ex;
                }

                return(newXml);
            }
        }
Beispiel #11
0
        public static GFBIODataCenterFormularObject GetGFBIODataCenterFormularObject(long datasetId)
        {
            DatasetManager datasetManager = new DatasetManager();

            try
            {
                Dataset          dataset          = datasetManager.GetDataset(datasetId);
                DatasetVersion   datasetVersion   = datasetManager.GetDatasetLatestVersion(datasetId);
                XmlDatasetHelper xmlDatasetHelper = new XmlDatasetHelper();

                GFBIODataCenterFormularObject gfbioDataCenterFormularObject = new GFBIODataCenterFormularObject();

                //gfbioDataCenterFormularObject.ProjectId = 1;
                //gfbioDataCenterFormularObject.ProjectTitle = "Test Poject title";
                //gfbioDataCenterFormularObject.ProjectLabel = "Test Poject label";
                //gfbioDataCenterFormularObject.ProjectAbstract = "";
                //gfbioDataCenterFormularObject.ProjectPi = "ProjectPi";

                //gfbioDataCenterFormularObject.UserId = 1;
                //gfbioDataCenterFormularObject.UserName = "******";
                //gfbioDataCenterFormularObject.UserEmail = "testEmail";
                //gfbioDataCenterFormularObject.DatasetAuthor = "TestAuthor";

                gfbioDataCenterFormularObject.DatasetId          = datasetId;
                gfbioDataCenterFormularObject.DatasetVersion     = datasetVersion.Id;
                gfbioDataCenterFormularObject.License            = "";
                gfbioDataCenterFormularObject.DatasetTitle       = xmlDatasetHelper.GetInformation(datasetId, NameAttributeValues.title);
                gfbioDataCenterFormularObject.DatasetLabel       = xmlDatasetHelper.GetInformation(datasetId, NameAttributeValues.title);
                gfbioDataCenterFormularObject.DatasetDescription = xmlDatasetHelper.GetInformation(datasetId, NameAttributeValues.description);
                //gfbioDataCenterFormularObject.DatasetAuthors = new List<string>();



                gfbioDataCenterFormularObject.DatasetCollectionTime = datasetVersion.Dataset.LastCheckIOTimestamp;

                MetadataStructureManager metadataStructureManager = new MetadataStructureManager();
                MetadataStructure        metadataStructure        = metadataStructureManager.Repo.Get(dataset.MetadataStructure.Id);

                gfbioDataCenterFormularObject.MetadataSchemaName = metadataStructure.Name;


                return(gfbioDataCenterFormularObject);
            }
            finally
            {
                datasetManager.Dispose();
            }
        }
Beispiel #12
0
        public static string IsValideAgainstSchema(long datasetId, TransmissionType type, string mappingName)
        {
            DatasetManager datasetManager = new DatasetManager();

            try
            {
                XmlDatasetHelper xmlDatasetHelper = new XmlDatasetHelper();

                DatasetVersion datasetVersion = datasetManager.GetDatasetLatestVersion(datasetId);

                string mappingFileName = xmlDatasetHelper.GetTransmissionInformation(datasetVersion.Id, type, mappingName);
                // if mapping file not exists
                if (string.IsNullOrEmpty(mappingFileName))
                {
                    return("");
                }
                string pathMappingFile = Path.Combine(AppConfiguration.GetModuleWorkspacePath("DIM"), mappingFileName);

                XmlMapperManager xmlMapperManager = new XmlMapperManager(TransactionDirection.InternToExtern);
                xmlMapperManager.Load(pathMappingFile, "exporttest");

                XmlDocument tmp = GetConvertedMetadata(datasetId, type, mappingName, false);

                string path = Path.Combine(AppConfiguration.DataPath, "Temp", "System", "convertedMetadata.xml");

                if (FileHelper.FileExist(path))
                {
                    FileHelper.Delete(path);
                }

                FileHelper.CreateDicrectoriesIfNotExist(Path.GetDirectoryName(path));

                tmp.Save(path);
                XmlDocument metadataForImport = new XmlDocument();
                metadataForImport.Load(path);

                return(xmlMapperManager.Validate(metadataForImport));
            }
            catch (Exception ex)
            {
                return(ex.Message);
            }
            finally
            {
                datasetManager.Dispose();
            }
        }
Beispiel #13
0
        /// <summary>
        ///
        /// </summary>
        /// <remarks></remarks>
        /// <seealso cref=""/>
        /// <param name="ID"></param>
        /// <param name="structured"></param>
        /// <returns></returns>
        public DataStructure GetDataStructureByID(long ID, bool structured)
        {
            this.structured = structured;
            if (structured)
            {
                return(this.GetDataStructureByID(ID));
            }
            else
            {
                DataStructureManager      dsm = new DataStructureManager();
                UnStructuredDataStructure unStructuredDataStructure = dsm.UnStructuredDataStructureRepo.Get(ID);
                this.dataStructure = unStructuredDataStructure;

                if (this.dataStructure != null)
                {
                    this.variables = null;
                    if (this.dataStructure.Datasets == null)
                    {
                        inUse = false;
                    }
                    else
                    {
                        if (this.dataStructure.Datasets.Count > 0)
                        {
                            inUse = true;
                            DatasetListElement datasetListElement = new DatasetListElement();
                            DatasetManager     dm = new DatasetManager();
                            foreach (Dataset d in unStructuredDataStructure.Datasets)
                            {
                                datasetListElement = new DatasetListElement(d.Id, XmlDatasetHelper.GetInformation(d, AttributeNames.title));
                                datasets.Add(datasetListElement);
                            }
                        }
                        else
                        {
                            inUse = false;
                        }
                    }
                    return(unStructuredDataStructure);
                }
                else
                {
                    this.dataStructure = new StructuredDataStructure();
                    return(unStructuredDataStructure);
                }
            }
        }
Beispiel #14
0
        public void fillDatasetList()
        {
            using (DatasetManager dm = new DatasetManager())
            {
                DatasetListElement datasetListElement = new DatasetListElement();
                datasets = new List <DatasetListElement>();

                XmlDatasetHelper xmlDatasetHelper = new XmlDatasetHelper();


                foreach (var item in dm.GetDatasetLatestVersions(dataStructure.Id, true))
                {
                    datasetListElement = new DatasetListElement(item.Key, item.Value.Title);
                    datasets.Add(datasetListElement);
                }
            }
        }
        public string GetTitleById(long id)
        {
            using (var uow = this.GetUnitOfWork())
            {
                var dm = new DatasetManager();

                try
                {
                    var datasetHelper = new XmlDatasetHelper();

                    return(datasetHelper.GetInformation(id, NameAttributeValues.title));
                }
                finally
                {
                    dm.Dispose();
                }
            }
        }
Beispiel #16
0
        public static GFBIOPangaeaFormularObject GetGFBIOPangaeaFormularObject(long datasetId)
        {
            using (DatasetManager datasetManager = new DatasetManager())
                using (MetadataStructureManager metadataStructureManager = new MetadataStructureManager())
                {
                    Dataset        dataset        = datasetManager.GetDataset(datasetId);
                    DatasetVersion datasetVersion = datasetManager.GetDatasetLatestVersion(datasetId);

                    MetadataStructure metadataStructure = metadataStructureManager.Repo.Get(dataset.MetadataStructure.Id);

                    GFBIOPangaeaFormularObject gfbioPangaeaFormularObject = new GFBIOPangaeaFormularObject();

                    XmlDatasetHelper xmlDatasetHelper = new XmlDatasetHelper();

                    string title       = datasetVersion.Title;
                    string description = datasetVersion.Description;

                    return(gfbioPangaeaFormularObject);
                }
        }
        public int CountEntities()
        {
            using (var uow = this.GetUnitOfWork())
            {
                DatasetManager           dm = new DatasetManager();
                MetadataStructureManager metadataStructureManager = new MetadataStructureManager();
                XmlDatasetHelper         xmlDatasetHelper         = new XmlDatasetHelper();
                var entities = new List <EntityStoreItem>();
                int count    = 0;

                try
                {
                    List <long> metadataStructureIds = metadataStructureManager.Repo.Query().Select(m => m.Id).ToList();

                    List <long> metadataSturctureIdsForDatasets = new List <long>();
                    metadataStructureIds.ForEach(m => xmlDatasetHelper.HasEntity(m, _entityName));

                    foreach (var msid in metadataStructureIds)
                    {
                        var datasetIds = new List <long>();
                        // get all datasets based on metadata data structure id

                        datasetIds = dm.DatasetRepo.Query(d => d.MetadataStructure.Id.Equals(msid)).Select(d => d.Id).ToList();
                        count     += datasetIds.Count;
                    }

                    return(count);
                }
                catch (Exception ex)
                {
                    throw ex;
                }
                finally
                {
                    dm.Dispose();
                    metadataStructureManager.Dispose();
                }
            }
        }
        public int CountVersions(long id)
        {
            DatasetManager dm = new DatasetManager();

            try
            {
                var datasetIds    = dm.GetDatasetLatestIds();
                var datasetHelper = new XmlDatasetHelper();

                int version = dm.GetDataset(id).Versions.Count;

                return(version);
            }
            catch (Exception ex)
            {
                return(0);
            }
            finally
            {
                dm.Dispose();
            }
        }
Beispiel #19
0
        public void fillDatasetList()
        {
            DatasetListElement datasetListElement = new DatasetListElement();
            DatasetManager     dm = null;

            datasets = new List <DatasetListElement>();

            try
            {
                dm = new DatasetManager();
                XmlDatasetHelper xmlDatasetHelper = new XmlDatasetHelper();


                foreach (var item in dm.GetDatasetLatestVersions(dataStructure.Id, true))
                {
                    datasetListElement = new DatasetListElement(item.Key, xmlDatasetHelper.GetInformation(item.Value.Id, NameAttributeValues.title));
                    datasets.Add(datasetListElement);
                }
            }
            finally
            {
                dm.Dispose();
            }
        }
Beispiel #20
0
        public List <ListViewItem> LoadDatasetViewList()
        {
            List <ListViewItem> temp = new List <ListViewItem>();

            DatasetManager          datasetManager          = new DatasetManager();
            EntityPermissionManager entityPermissionManager = new EntityPermissionManager();
            //get all datasetsid where the current userer has access to
            UserManager      userManager      = new UserManager();
            XmlDatasetHelper xmlDatasetHelper = new XmlDatasetHelper();

            try
            {
                List <long> datasetIds = entityPermissionManager.GetKeys(GetUsernameOrDefault(), "Dataset",
                                                                         typeof(Dataset), RightType.Write);

                foreach (long id in datasetIds)
                {
                    if (datasetManager.IsDatasetCheckedIn(id))
                    {
                        string title       = xmlDatasetHelper.GetInformation(id, NameAttributeValues.title);
                        string description = xmlDatasetHelper.GetInformation(id, NameAttributeValues.description);

                        temp.Add(new ListViewItem(id, title, description));
                    }
                }


                return(temp.OrderBy(p => p.Title).ToList());
            }
            finally
            {
                datasetManager.Dispose();
                entityPermissionManager.Dispose();
                userManager.Dispose();
            }
        }
Beispiel #21
0
        private HttpResponseMessage getData(long id, int version, string token, string projection = null, string selection = null)
        {
            DatasetManager          datasetManager          = new DatasetManager();
            UserManager             userManager             = new UserManager();
            EntityPermissionManager entityPermissionManager = new EntityPermissionManager();
            EntityManager           entityManager           = new EntityManager();

            bool isPublic = false;

            try
            {
                // if a dataset is public, then the api should also return data if there is no token for a user

                #region is public

                long?entityTypeId = entityManager.FindByName(typeof(Dataset).Name)?.Id;
                entityTypeId = entityTypeId.HasValue ? entityTypeId.Value : -1;

                isPublic = entityPermissionManager.Exists(null, entityTypeId.Value, id);

                #endregion is public

                if (!isPublic && String.IsNullOrEmpty(token))

                {
                    var request = Request.CreateResponse();
                    request.Content = new StringContent("Bearer token not exist.");

                    return(request);
                }

                User user = userManager.Users.Where(u => u.Token.Equals(token)).FirstOrDefault();

                if (isPublic || user != null)
                {
                    if (isPublic || entityPermissionManager.HasEffectiveRight(user.Name, typeof(Dataset), id, RightType.Read))
                    {
                        XmlDatasetHelper  xmlDatasetHelper    = new XmlDatasetHelper();
                        OutputDataManager ioOutputDataManager = new OutputDataManager();

                        Dataset dataset = datasetManager.GetDataset(id);

                        // If the requested version is -1 or the last version of the dataset, then the data will be loaded in a
                        // different way than when loading the data from an older version
                        bool isLatestVersion = false;
                        if (version == -1 || dataset.Versions.Count == version)
                        {
                            isLatestVersion = true;
                        }

                        if (isLatestVersion)
                        {
                            #region get data from the latest version of a dataset

                            DatasetVersion datasetVersion = datasetManager.GetDatasetLatestVersion(id);

                            string title = datasetVersion.Title;

                            // check the data sturcture type ...
                            if (datasetVersion.Dataset.DataStructure.Self is StructuredDataStructure)
                            {
                                //FilterExpression filter = null;
                                //OrderByExpression orderBy = null;
                                //ProjectionExpression projectionExpression = GetProjectionExpression(projection);

                                // apply selection and projection
                                long count = datasetManager.RowCount(id);

                                DataTable dt = datasetManager.GetLatestDatasetVersionTuples(id, null, null, null, 0, (int)count);
                                dt.Strip();

                                if (!string.IsNullOrEmpty(selection))
                                {
                                    dt = OutputDataManager.SelectionOnDataTable(dt, selection, true);
                                }

                                if (!string.IsNullOrEmpty(projection))
                                {
                                    // make the header names upper case to make them case insensitive
                                    dt = OutputDataManager.ProjectionOnDataTable(dt, projection.ToUpper().Split(','));
                                }

                                dt.TableName = id + "_data";

                                DatasetModel model = new DatasetModel();
                                model.DataTable = dt;

                                var response = Request.CreateResponse();
                                response.Content = new ObjectContent(typeof(DatasetModel), model, new DatasetModelCsvFormatter(model.DataTable.TableName));
                                response.Content.Headers.ContentType = new MediaTypeHeaderValue("text/csv");

                                //set headers on the "response"
                                return(response);

                                #endregion get data from the latest version of a dataset

                                //return model;
                            }
                            else
                            {
                                return(Request.CreateResponse());
                            }
                        }
                        else
                        {
                            #region load data of a older version of a dataset

                            int index = version - 1;
                            if (version >= dataset.Versions.Count)
                            {
                                return(Request.CreateResponse(HttpStatusCode.PreconditionFailed, String.Format("This version ({0}) is not available for the dataset", version)));
                            }

                            DatasetVersion datasetVersion = dataset.Versions.OrderBy(d => d.Timestamp).ElementAt(version - 1);

                            string title = datasetVersion.Title;

                            // check the data sturcture type ...
                            if (datasetVersion.Dataset.DataStructure.Self is StructuredDataStructure)
                            {
                                //FilterExpression filter = null;
                                //OrderByExpression orderBy = null;

                                // apply selection and projection
                                int       count = datasetManager.GetDatasetVersionEffectiveTuples(datasetVersion).Count;
                                DataTable dt    = datasetManager.GetDatasetVersionTuples(datasetVersion.Id, 0, count);

                                dt.Strip();

                                if (!string.IsNullOrEmpty(selection))
                                {
                                    dt = OutputDataManager.SelectionOnDataTable(dt, selection);
                                }

                                if (!string.IsNullOrEmpty(projection))
                                {
                                    // make the header names upper case to make them case insensitive
                                    dt = OutputDataManager.ProjectionOnDataTable(dt, projection.ToUpper().Split(','));
                                }

                                dt.TableName = id + "_data";

                                DatasetModel model = new DatasetModel();
                                model.DataTable = dt;

                                var response = Request.CreateResponse();
                                response.Content = new ObjectContent(typeof(DatasetModel), model, new DatasetModelCsvFormatter(model.DataTable.TableName));
                                response.Content.Headers.ContentType = new MediaTypeHeaderValue("text/csv");

                                //set headers on the "response"
                                return(response);
                            }
                            else // return files of the unstructure dataset
                            {
                                return(Request.CreateResponse());
                            }

                            #endregion load data of a older version of a dataset
                        }
                    }
                    else // has rights?
                    {
                        var request = Request.CreateResponse();
                        request.Content = new StringContent("User has no read right.");

                        return(request);
                    }
                }
                else
                {
                    var request = Request.CreateResponse();
                    request.Content = new StringContent("User is not available.");

                    return(request);
                }
            }
            catch (Exception e)
            {
                throw e;
            }
            finally
            {
                datasetManager.Dispose();
                userManager.Dispose();
                entityPermissionManager.Dispose();
                entityManager.Dispose();
            }
        }
Beispiel #22
0
        public HttpResponseMessage Post([FromBody] PostApiDatasetModel dataset)
        {
            var    request        = Request.CreateResponse();
            User   user           = null;
            string error          = "";
            long   datasetId      = 0;
            long   researchPlanId = 1;

            using (DatasetManager datasetManager = new DatasetManager())
                using (DataStructureManager dataStructureManager = new DataStructureManager())
                    using (ResearchPlanManager researchPlanManager = new ResearchPlanManager())
                        using (UserManager userManager = new UserManager())
                            using (EntityPermissionManager entityPermissionManager = new EntityPermissionManager())
                                using (MetadataStructureManager metadataStructureManager = new MetadataStructureManager())
                                {
                                    try
                                    {
                                        #region security

                                        string token = this.Request.Headers.Authorization?.Parameter;

                                        if (String.IsNullOrEmpty(token))
                                        {
                                            request.Content = new StringContent("Bearer token not exist.");

                                            return(request);
                                        }

                                        user = userManager.Users.Where(u => u.Token.Equals(token)).FirstOrDefault();

                                        if (user == null)
                                        {
                                            request.Content = new StringContent("Token is not valid.");

                                            return(request);
                                        }

                                        #endregion security

                                        #region incomming values check

                                        // check incomming values
                                        if (dataset.Title == null)
                                        {
                                            error += "title not existing.";
                                        }
                                        if (dataset.Description == null)
                                        {
                                            error += "description not existing.";
                                        }
                                        if (dataset.MetadataStructureId == 0)
                                        {
                                            error += "metadata structure id should not be null. ";
                                        }
                                        if (dataset.DataStructureId == 0)
                                        {
                                            error += "datastructure id should not be null. ";
                                        }

                                        if (!string.IsNullOrEmpty(error))
                                        {
                                            request.Content = new StringContent(error);

                                            return(request);
                                        }

                                        #endregion incomming values check

                                        #region create dataset

                                        DataStructure dataStructure = dataStructureManager.StructuredDataStructureRepo.Get(dataset.DataStructureId);
                                        //if datastructure is not a structured one
                                        if (dataStructure == null)
                                        {
                                            dataStructure = dataStructureManager.UnStructuredDataStructureRepo.Get(dataset.DataStructureId);
                                        }

                                        if (dataStructure == null)
                                        {
                                            request.Content = new StringContent("A data structure with id " + dataset.DataStructureId + "does not exist.");
                                            return(request);
                                        }

                                        ResearchPlan rp = researchPlanManager.Repo.Get(researchPlanId);

                                        if (rp == null)
                                        {
                                            request.Content = new StringContent("A research plan with id " + researchPlanId + "does not exist.");
                                            return(request);
                                        }

                                        MetadataStructure metadataStructure = metadataStructureManager.Repo.Get(dataset.MetadataStructureId);

                                        if (metadataStructure == null)
                                        {
                                            request.Content = new StringContent("A metadata structure with id " + dataset.MetadataStructureId + "does not exist.");
                                            return(request);
                                        }

                                        var newDataset = datasetManager.CreateEmptyDataset(dataStructure, rp, metadataStructure);
                                        datasetId = newDataset.Id;

                                        // add security
                                        entityPermissionManager.Create <User>(user.UserName, "Dataset", typeof(Dataset), newDataset.Id, Enum.GetValues(typeof(RightType)).Cast <RightType>().ToList());

                                        //add title and description to the metadata

                                        if (datasetManager.IsDatasetCheckedOutFor(datasetId, user.UserName) || datasetManager.CheckOutDataset(datasetId, user.UserName))
                                        {
                                            DatasetVersion workingCopy = datasetManager.GetDatasetWorkingCopy(datasetId);

                                            XmlMetadataWriter xmlMetadataWriter = new XmlMetadataWriter(XmlNodeMode.xPath);
                                            XDocument         xdoc = xmlMetadataWriter.CreateMetadataXml(dataset.MetadataStructureId);
                                            workingCopy.Metadata = XmlUtility.ToXmlDocument(xdoc);
                                            XmlDatasetHelper xmlDatasetHelper = new XmlDatasetHelper();
                                            workingCopy.Metadata    = xmlDatasetHelper.SetInformation(workingCopy, workingCopy.Metadata, NameAttributeValues.title, dataset.Title);
                                            workingCopy.Title       = dataset.Title;
                                            workingCopy.Metadata    = xmlDatasetHelper.SetInformation(workingCopy, workingCopy.Metadata, NameAttributeValues.description, dataset.Description);
                                            workingCopy.Description = dataset.Description;


                                            ////set modification
                                            workingCopy.ModificationInfo = new EntityAuditInfo()
                                            {
                                                Performer  = user.UserName,
                                                Comment    = "Metadata",
                                                ActionType = AuditActionType.Create
                                            };

                                            datasetManager.EditDatasetVersion(workingCopy, null, null, null);
                                            datasetManager.CheckInDataset(datasetId, "Title and description were added to the dataset via the api.", user.UserName, ViewCreationBehavior.None);
                                        }

                                        request.Content = new StringContent("the dataset " + dataset.Title + "(" + datasetId + ") was successfully created.");
                                        return(request);

                                        #endregion create dataset
                                    }
                                    catch (Exception ex)
                                    {
                                        request.Content = new StringContent(ex.Message);
                                        return(request);
                                    }
                                }
        }
        private HttpResponseMessage getData(long id, int variableId, string token)
        {
            DatasetManager          datasetManager          = new DatasetManager();
            UserManager             userManager             = new UserManager();
            EntityPermissionManager entityPermissionManager = new EntityPermissionManager();
            EntityManager           entityManager           = new EntityManager();
            DataStructureManager    dataStructureManager    = null;

            bool isPublic = false;

            try
            {
                // if a dataset is public, then the api should also return data if there is no token for a user

                #region is public
                dataStructureManager = new DataStructureManager();

                long?entityTypeId = entityManager.FindByName(typeof(Dataset).Name)?.Id;
                entityTypeId = entityTypeId.HasValue ? entityTypeId.Value : -1;

                isPublic = entityPermissionManager.Exists(null, entityTypeId.Value, id);

                #endregion is public

                if (!isPublic && String.IsNullOrEmpty(token))

                {
                    var request = Request.CreateResponse();
                    request.Content = new StringContent("Bearer token not exist.");

                    return(request);
                }

                User user = userManager.Users.Where(u => u.Token.Equals(token)).FirstOrDefault();

                if (isPublic || user != null)
                {
                    if (isPublic || entityPermissionManager.HasEffectiveRight(user.Name, typeof(Dataset), id, RightType.Read))
                    {
                        XmlDatasetHelper  xmlDatasetHelper    = new XmlDatasetHelper();
                        OutputDataManager ioOutputDataManager = new OutputDataManager();

                        Dataset        dataset        = datasetManager.GetDataset(id);
                        DatasetVersion datasetVersion = datasetManager.GetDatasetLatestVersion(id);

                        string title = datasetVersion.Title;

                        // check the data sturcture type ...
                        if (datasetVersion.Dataset.DataStructure.Self is StructuredDataStructure)
                        {
                            object stats = new object();

                            DataTable dt = new DataTable("Varibales");

                            List <ApiDataStatisticModel> dataStatisticModels = new List <ApiDataStatisticModel>();
                            if (variableId == -1)
                            {
                                StructuredDataStructure structuredDataStructure = dataStructureManager.StructuredDataStructureRepo.Get(datasetVersion.Dataset.DataStructure.Id);
                                List <string>           varIds = new List <string>();
                                foreach (Variable vs in structuredDataStructure.Variables)
                                {
                                    varIds.Add("var" + vs.Id);
                                }
                                dt = GetDuplicates(id, varIds);
                            }
                            else
                            {
                            }
                            //dt.Strip();


                            dt.TableName = id + "_data";

                            DatasetModel model = new DatasetModel();
                            model.DataTable = dt;

                            var    response = Request.CreateResponse(HttpStatusCode.OK);
                            string resp     = JsonConvert.SerializeObject(model);

                            response.Content = new StringContent(resp, System.Text.Encoding.UTF8, "application/json");
                            response.Content.Headers.ContentType = new MediaTypeHeaderValue("application/json");

                            return(response);
                        }
                        else
                        {
                            return(Request.CreateResponse());
                        }
                    }
                    else // has rights?
                    {
                        var request = Request.CreateResponse();
                        request.Content = new StringContent("User has no read right.");

                        return(request);
                    }
                }
                else
                {
                    var request = Request.CreateResponse();
                    request.Content = new StringContent("User is not available.");

                    return(request);
                }
            }
            catch (Exception e)
            {
                throw e;
            }
            finally
            {
                datasetManager.Dispose();
                userManager.Dispose();
                entityPermissionManager.Dispose();
                entityManager.Dispose();
                dataStructureManager.Dispose();
            }
        }
        public List <EntityStoreItem> GetEntities(int skip, int take)
        {
            bool withPaging = (take > 0);


            using (var uow = this.GetUnitOfWork())
            {
                DatasetManager           dm = new DatasetManager();
                MetadataStructureManager metadataStructureManager = new MetadataStructureManager();
                XmlDatasetHelper         xmlDatasetHelper         = new XmlDatasetHelper();
                var entities = new List <EntityStoreItem>();

                try
                {
                    List <long> metadataStructureIds = metadataStructureManager.Repo.Query().Select(m => m.Id).ToList();

                    List <long> metadataSturctureIdsForDatasets = new List <long>();
                    metadataSturctureIdsForDatasets = metadataStructureIds.Where(m => xmlDatasetHelper.HasEntity(m, _entityName)).ToList();

                    foreach (var msid in metadataSturctureIdsForDatasets)
                    {
                        var datasetIds = new List <long>();
                        // get all datasets based on metadata data structure id
                        if (withPaging)
                        {
                            datasetIds = dm.DatasetRepo
                                         .Query(d => d.MetadataStructure.Id.Equals(msid))
                                         .Skip(skip)
                                         .Take(take)
                                         .Select(d => d.Id).ToList();
                        }
                        else
                        {
                            datasetIds = dm.DatasetRepo.Query(d => d.MetadataStructure.Id.Equals(msid)).Select(d => d.Id).ToList();
                        }


                        if (!datasetIds.Any())
                        {
                            continue;
                        }

                        // create tuples based on dataset id list, and get latest version of each dataset

                        List <DatasetVersion> datasetVersions = dm.GetDatasetLatestVersions(datasetIds, false);
                        foreach (var dsv in datasetVersions)
                        {
                            var e = new EntityStoreItem()
                            {
                                Id      = dsv.Dataset.Id,
                                Title   = dsv.Title,
                                Version = dm.GetDatasetVersionCount(dsv.Dataset.Id)
                            };

                            entities.Add(e);
                        }
                    }

                    return(entities.ToList());
                }
                catch (Exception ex)
                {
                    throw ex;
                }
                finally
                {
                    dm.Dispose();
                    metadataStructureManager.Dispose();
                }
            }
        }
Beispiel #25
0
        //temporary solution: norman :FinishUpload2
        public List <Error> FinishUpload(TaskManager taskManager)
        {
            DataStructureManager dsm = new DataStructureManager();
            DatasetManager       dm  = new DatasetManager();

            try
            {
                List <Error>   temp        = new List <Error>();
                DatasetVersion workingCopy = new DatasetVersion();
                //datatuple list
                List <DataTuple> rows            = new List <DataTuple>();
                Dataset          ds              = null;
                bool             inputWasAltered = false;

                if (TaskManager.Bus.ContainsKey(TaskManager.DATASET_ID) && TaskManager.Bus.ContainsKey(TaskManager.DATASTRUCTURE_ID))
                {
                    long id    = Convert.ToInt32(TaskManager.Bus[TaskManager.DATASET_ID]);
                    long iddsd = Convert.ToInt32(TaskManager.Bus[TaskManager.DATASTRUCTURE_ID]);

                    ds = dm.GetDataset(id);
                    // Javad: Please check if the dataset does exists!!

                    //GetValues from the previus version
                    // Status
                    DatasetVersion latestVersion = dm.GetDatasetLatestVersion(ds);
                    string         status        = DatasetStateInfo.NotValid.ToString();
                    if (latestVersion.StateInfo != null)
                    {
                        status = latestVersion.StateInfo.State;
                    }


                    #region Progress Informations

                    if (TaskManager.Bus.ContainsKey(TaskManager.CURRENTPACKAGESIZE))
                    {
                        TaskManager.Bus[TaskManager.CURRENTPACKAGESIZE] = 0;
                    }
                    else
                    {
                        TaskManager.Bus.Add(TaskManager.CURRENTPACKAGESIZE, 0);
                    }

                    if (TaskManager.Bus.ContainsKey(TaskManager.CURRENTPACKAGE))
                    {
                        TaskManager.Bus[TaskManager.CURRENTPACKAGE] = 0;
                    }
                    else
                    {
                        TaskManager.Bus.Add(TaskManager.CURRENTPACKAGE, 0);
                    }

                    #endregion

                    #region structured data

                    if (TaskManager.Bus.ContainsKey(TaskManager.DATASTRUCTURE_TYPE) && TaskManager.Bus[TaskManager.DATASTRUCTURE_TYPE].Equals(DataStructureType.Structured))
                    {
                        string           title            = "";
                        long             datasetid        = ds.Id;
                        XmlDatasetHelper xmlDatasetHelper = new XmlDatasetHelper();
                        title = xmlDatasetHelper.GetInformation(ds.Id, NameAttributeValues.title);
                        try
                        {
                            //Stopwatch fullTime = Stopwatch.StartNew();

                            //Stopwatch loadDT = Stopwatch.StartNew();
                            List <long> datatupleFromDatabaseIds = dm.GetDatasetVersionEffectiveTupleIds(dm.GetDatasetLatestVersion(ds.Id));
                            //loadDT.Stop();
                            //Debug.WriteLine("Load DT From Db Time " + loadDT.Elapsed.TotalSeconds.ToString());

                            StructuredDataStructure sds = dsm.StructuredDataStructureRepo.Get(iddsd);
                            dsm.StructuredDataStructureRepo.LoadIfNot(sds.Variables);

                            #region excel reader

                            if (TaskManager.Bus[TaskManager.EXTENTION].ToString().Equals(".xlsm"))
                            {
                                int packageSize = 10000;

                                TaskManager.Bus[TaskManager.CURRENTPACKAGESIZE] = packageSize;

                                int counter = 0;

                                ExcelReader reader = new ExcelReader();

                                //schleife
                                dm.CheckOutDatasetIfNot(ds.Id, GetUsernameOrDefault()); // there are cases, the dataset does not get checked out!!
                                if (!dm.IsDatasetCheckedOutFor(ds.Id, GetUsernameOrDefault()))
                                {
                                    throw new Exception(string.Format("Not able to checkout dataset '{0}' for  user '{1}'!", ds.Id, GetUsernameOrDefault()));
                                }

                                workingCopy = dm.GetDatasetWorkingCopy(ds.Id);

                                //set StateInfo of the previus version
                                if (workingCopy.StateInfo == null)
                                {
                                    workingCopy.StateInfo = new Vaiona.Entities.Common.EntityStateInfo()
                                    {
                                        State = status
                                    };
                                }
                                else
                                {
                                    workingCopy.StateInfo.State = status;
                                }


                                do
                                {
                                    //Stopwatch packageTime = Stopwatch.StartNew();

                                    counter++;
                                    TaskManager.Bus[TaskManager.CURRENTPACKAGE] = counter;

                                    // open file
                                    Stream = reader.Open(TaskManager.Bus[TaskManager.FILEPATH].ToString());
                                    Stopwatch upload = Stopwatch.StartNew();
                                    rows = reader.ReadFile(Stream, TaskManager.Bus[TaskManager.FILENAME].ToString(), sds, (int)id, packageSize);
                                    upload.Stop();
                                    Debug.WriteLine("ReadFile: " + counter + "  Time " + upload.Elapsed.TotalSeconds.ToString());

                                    if (reader.ErrorMessages.Count > 0)
                                    {
                                        //model.ErrorList = reader.errorMessages;
                                    }
                                    else
                                    {
                                        //XXX Add packagesize to excel read function
                                        if (TaskManager.Bus.ContainsKey(TaskManager.DATASET_STATUS))
                                        {
                                            if (TaskManager.Bus[TaskManager.DATASET_STATUS].ToString().Equals("new"))
                                            {
                                                upload = Stopwatch.StartNew();
                                                dm.EditDatasetVersion(workingCopy, rows, null, null);
                                                upload.Stop();
                                                Debug.WriteLine("EditDatasetVersion: " + counter + "  Time " + upload.Elapsed.TotalSeconds.ToString());
                                                //Debug.WriteLine("----");
                                            }
                                            if (TaskManager.Bus[TaskManager.DATASET_STATUS].ToString().Equals("edit"))
                                            {
                                                if (rows.Count() > 0)
                                                {
                                                    //Stopwatch split = Stopwatch.StartNew();
                                                    Dictionary <string, List <DataTuple> > splittedDatatuples = new Dictionary <string, List <DataTuple> >();
                                                    splittedDatatuples = uploadWizardHelper.GetSplitDatatuples(rows, (List <long>)TaskManager.Bus[TaskManager.PRIMARY_KEYS], workingCopy, ref datatupleFromDatabaseIds);
                                                    //split.Stop();
                                                    //Debug.WriteLine("Split : " + counter + "  Time " + split.Elapsed.TotalSeconds.ToString());

                                                    //Stopwatch upload = Stopwatch.StartNew();
                                                    dm.EditDatasetVersion(workingCopy, splittedDatatuples["new"], splittedDatatuples["edit"], null);
                                                    //    upload.Stop();
                                                    //    Debug.WriteLine("Upload : " + counter + "  Time " + upload.Elapsed.TotalSeconds.ToString());
                                                    //    Debug.WriteLine("----");
                                                }
                                            }
                                        }
                                        else
                                        {
                                        }
                                    }

                                    Stream.Close();

                                    //packageTime.Stop();
                                    //Debug.WriteLine("Package : " + counter + " packageTime Time " + packageTime.Elapsed.TotalSeconds.ToString());
                                } while (rows.Count() > 0);

                                //fullTime.Stop();
                                //Debug.WriteLine("FullTime " + fullTime.Elapsed.TotalSeconds.ToString());
                            }

                            #endregion

                            #region ascii reader


                            if (TaskManager.Bus[TaskManager.EXTENTION].ToString().Equals(".csv") ||
                                TaskManager.Bus[TaskManager.EXTENTION].ToString().Equals(".txt"))
                            {
                                // open file
                                AsciiReader reader = new AsciiReader();
                                //Stream = reader.Open(TaskManager.Bus[TaskManager.FILEPATH].ToString());

                                //DatasetManager dm = new DatasetManager();
                                //Dataset ds = dm.GetDataset(id);

                                Stopwatch totalTime = Stopwatch.StartNew();

                                if (dm.IsDatasetCheckedOutFor(ds.Id, GetUsernameOrDefault()) || dm.CheckOutDataset(ds.Id, GetUsernameOrDefault()))
                                {
                                    workingCopy = dm.GetDatasetWorkingCopy(ds.Id);
                                    int packageSize = 100000;
                                    TaskManager.Bus[TaskManager.CURRENTPACKAGESIZE] = packageSize;
                                    //schleife
                                    int counter = 0;

                                    //set StateInfo of the previus version
                                    if (workingCopy.StateInfo == null)
                                    {
                                        workingCopy.StateInfo = new Vaiona.Entities.Common.EntityStateInfo()
                                        {
                                            State = status
                                        };
                                    }
                                    else
                                    {
                                        workingCopy.StateInfo.State = status;
                                    }

                                    do
                                    {
                                        counter++;
                                        inputWasAltered = false;
                                        TaskManager.Bus[TaskManager.CURRENTPACKAGE] = counter;

                                        Stream = reader.Open(TaskManager.Bus[TaskManager.FILEPATH].ToString());
                                        rows   = reader.ReadFile(Stream, TaskManager.Bus[TaskManager.FILENAME].ToString(), (AsciiFileReaderInfo)TaskManager.Bus[TaskManager.FILE_READER_INFO], sds, id, packageSize);
                                        Stream.Close();

                                        if (reader.ErrorMessages.Count > 0)
                                        {
                                            foreach (var err in reader.ErrorMessages)
                                            {
                                                temp.Add(new Error(ErrorType.Dataset, err.GetMessage()));
                                            }
                                            //return temp;
                                        }
                                        //model.Validated = true;
                                        Stopwatch dbTimer = Stopwatch.StartNew();

                                        if (TaskManager.Bus.ContainsKey(TaskManager.DATASET_STATUS))
                                        {
                                            if (TaskManager.Bus[TaskManager.DATASET_STATUS].ToString().Equals("new"))
                                            {
                                                dm.EditDatasetVersion(workingCopy, rows, null, null);
                                            }

                                            if (TaskManager.Bus[TaskManager.DATASET_STATUS].ToString().Equals("edit"))
                                            {
                                                if (rows.Count() > 0)
                                                {
                                                    //Dictionary<string, List<DataTuple>> splittedDatatuples = new Dictionary<string, List<AbstractTuple>>();
                                                    var splittedDatatuples = uploadWizardHelper.GetSplitDatatuples(rows, (List <long>)TaskManager.Bus[TaskManager.PRIMARY_KEYS], workingCopy, ref datatupleFromDatabaseIds);
                                                    dm.EditDatasetVersion(workingCopy, splittedDatatuples["new"], splittedDatatuples["edit"], null);
                                                    inputWasAltered = true;
                                                }
                                            }
                                        }
                                        else
                                        {
                                            if (rows.Count() > 0)
                                            {
                                                Dictionary <string, List <DataTuple> > splittedDatatuples = new Dictionary <string, List <DataTuple> >();
                                                splittedDatatuples = uploadWizardHelper.GetSplitDatatuples(rows, (List <long>)TaskManager.Bus[TaskManager.PRIMARY_KEYS], workingCopy, ref datatupleFromDatabaseIds);
                                                dm.EditDatasetVersion(workingCopy, splittedDatatuples["new"], splittedDatatuples["edit"], null);
                                                inputWasAltered = true;
                                            }
                                        }

                                        dbTimer.Stop();
                                        Debug.WriteLine(" db time" + dbTimer.Elapsed.TotalSeconds.ToString());
                                    } while (rows.Count() > 0 || inputWasAltered == true);



                                    totalTime.Stop();
                                    Debug.WriteLine(" Total Time " + totalTime.Elapsed.TotalSeconds.ToString());
                                }

                                //Stream.Close();
                            }

                            #endregion

                            #region contentdescriptors

                            //remove all contentdescriptors from the old version
                            //generatedTXT
                            if (workingCopy.ContentDescriptors.Any(c => c.Name.Equals("generatedTXT")))
                            {
                                ContentDescriptor tmp =
                                    workingCopy.ContentDescriptors.Where(c => c.Name.Equals("generatedTXT"))
                                    .FirstOrDefault();
                                dm.DeleteContentDescriptor(tmp);
                            }

                            //generatedCSV
                            if (workingCopy.ContentDescriptors.Any(c => c.Name.Equals("generatedCSV")))
                            {
                                ContentDescriptor tmp =
                                    workingCopy.ContentDescriptors.Where(c => c.Name.Equals("generatedCSV"))
                                    .FirstOrDefault();
                                dm.DeleteContentDescriptor(tmp);
                            }
                            //generated
                            if (workingCopy.ContentDescriptors.Any(c => c.Name.Equals("generated")))
                            {
                                ContentDescriptor tmp =
                                    workingCopy.ContentDescriptors.Where(c => c.Name.Equals("generated"))
                                    .FirstOrDefault();
                                dm.DeleteContentDescriptor(tmp);
                            }


                            #endregion


                            // ToDo: Get Comment from ui and users
                            MoveAndSaveOriginalFileInContentDiscriptor(workingCopy);
                            dm.CheckInDataset(ds.Id, "upload data from upload wizard", GetUsernameOrDefault());


                            //send email
                            var es = new EmailService();
                            es.Send(MessageHelper.GetUpdateDatasetHeader(),
                                    MessageHelper.GetUpdateDatasetMessage(datasetid, title, GetUsernameOrDefault()),
                                    ConfigurationManager.AppSettings["SystemEmail"]
                                    );
                        }
                        catch (Exception e)
                        {
                            temp.Add(new Error(ErrorType.Other, "Can not upload. : " + e.Message));
                            var es = new EmailService();
                            es.Send(MessageHelper.GetErrorHeader(),
                                    "Can not upload. : " + e.Message,
                                    ConfigurationManager.AppSettings["SystemEmail"]
                                    );
                        }
                        finally
                        {
                        }
                    }

                    #endregion

                    #region unstructured data

                    if (TaskManager.Bus.ContainsKey(TaskManager.DATASTRUCTURE_TYPE) && TaskManager.Bus[TaskManager.DATASTRUCTURE_TYPE].Equals(DataStructureType.Unstructured))
                    {
                        // checkout the dataset, apply the changes, and check it in.
                        if (dm.IsDatasetCheckedOutFor(ds.Id, GetUsernameOrDefault()) || dm.CheckOutDataset(ds.Id, GetUsernameOrDefault()))
                        {
                            try
                            {
                                workingCopy = dm.GetDatasetWorkingCopy(ds.Id);



                                using (var unitOfWork = this.GetUnitOfWork())
                                {
                                    workingCopy = unitOfWork.GetReadOnlyRepository <DatasetVersion>().Get(workingCopy.Id);

                                    //set StateInfo of the previus version
                                    if (workingCopy.StateInfo == null)
                                    {
                                        workingCopy.StateInfo = new Vaiona.Entities.Common.EntityStateInfo()
                                        {
                                            State = status
                                        };
                                    }
                                    else
                                    {
                                        workingCopy.StateInfo.State = status;
                                    }

                                    unitOfWork.GetReadOnlyRepository <DatasetVersion>().Load(workingCopy.ContentDescriptors);

                                    SaveFileInContentDiscriptor(workingCopy);
                                }
                                dm.EditDatasetVersion(workingCopy, null, null, null);

                                // ToDo: Get Comment from ui and users
                                dm.CheckInDataset(ds.Id, "upload unstructured data", GetUsernameOrDefault(), ViewCreationBehavior.None);
                            }
                            catch (Exception ex)
                            {
                                throw ex;
                            }
                        }
                    }

                    #endregion
                }
                else
                {
                    temp.Add(new Error(ErrorType.Dataset, "Dataset is not selected."));
                }

                if (temp.Count <= 0)
                {
                    dm.CheckInDataset(ds.Id, "checked in but no update on data tuples", GetUsernameOrDefault(), ViewCreationBehavior.None);
                }
                else
                {
                    dm.UndoCheckoutDataset(ds.Id, GetUsernameOrDefault());
                }
                return(temp);
            }
            finally
            {
                dm.Dispose();
                dsm.Dispose();
            }
        }
Beispiel #26
0
        private string getEntityName(long datasetid)
        {
            XmlDatasetHelper xmlDatasetHelper = new XmlDatasetHelper();

            return(xmlDatasetHelper.GetEntityName(datasetid));
        }
        private HttpResponseMessage getData(long id, int variableId, string token)
        {
            DatasetManager          datasetManager          = new DatasetManager();
            UserManager             userManager             = new UserManager();
            EntityPermissionManager entityPermissionManager = new EntityPermissionManager();
            EntityManager           entityManager           = new EntityManager();
            DataStructureManager    dataStructureManager    = null;

            bool isPublic = false;

            try
            {
                // if a dataset is public, then the api should also return data if there is no token for a user

                #region is public
                dataStructureManager = new DataStructureManager();

                long?entityTypeId = entityManager.FindByName(typeof(Dataset).Name)?.Id;
                entityTypeId = entityTypeId.HasValue ? entityTypeId.Value : -1;

                isPublic = entityPermissionManager.Exists(null, entityTypeId.Value, id);

                #endregion is public

                if (!isPublic && String.IsNullOrEmpty(token))

                {
                    var request = Request.CreateResponse();
                    request.Content = new StringContent("Bearer token not exist.");

                    return(request);
                }

                User user = userManager.Users.Where(u => u.Token.Equals(token)).FirstOrDefault();

                if (isPublic || user != null)
                {
                    if (isPublic || entityPermissionManager.HasEffectiveRight(user.Name, typeof(Dataset), id, RightType.Read))
                    {
                        XmlDatasetHelper  xmlDatasetHelper    = new XmlDatasetHelper();
                        OutputDataManager ioOutputDataManager = new OutputDataManager();

                        Dataset        dataset        = datasetManager.GetDataset(id);
                        DatasetVersion datasetVersion = datasetManager.GetDatasetLatestVersion(id);

                        string title = datasetVersion.Title;

                        // check the data sturcture type ...
                        if (datasetVersion.Dataset.DataStructure.Self is StructuredDataStructure)
                        {
                            object stats = new object();

                            DataTable dt = new DataTable("Varibales");
                            DataTable dtMissingValues = new DataTable("MissingValues");
                            dtMissingValues.Columns.Add("placeholder", typeof(String));
                            dtMissingValues.Columns.Add("displayName", typeof(String));

                            List <ApiDataStatisticModel> dataStatisticModels     = new List <ApiDataStatisticModel>();
                            StructuredDataStructure      structuredDataStructure = dataStructureManager.StructuredDataStructureRepo.Get(datasetVersion.Dataset.DataStructure.Id);
                            if (variableId == -1)
                            {
                                foreach (Variable vs in structuredDataStructure.Variables)
                                {
                                    ApiDataStatisticModel dataStatisticModel = new ApiDataStatisticModel();
                                    dt = GetUniqueValues(id, vs.Id);
                                    dataStatisticModel.VariableId   = vs.Id;
                                    dataStatisticModel.uniqueValues = dt;
                                    dataStatisticModel.minLength    = dt.Compute("Min(length)", string.Empty).ToString();
                                    dataStatisticModel.maxLength    = dt.Compute("Max(length)", string.Empty).ToString();
                                    dataStatisticModel.count        = dt.Compute("Sum(count)", string.Empty).ToString();
                                    dtMissingValues.Clear();
                                    foreach (var missingValue in vs.MissingValues)
                                    {
                                        DataRow workRow = dtMissingValues.NewRow();
                                        workRow["placeholder"] = missingValue.Placeholder;
                                        workRow["displayName"] = missingValue.DisplayName;
                                        dtMissingValues.Rows.Add(workRow);
                                    }
                                    dataStatisticModel.min           = GetMin(dtMissingValues, dt);
                                    dataStatisticModel.max           = GetMax(dtMissingValues, dt);
                                    dataStatisticModel.missingValues = dtMissingValues;
                                    dataStatisticModels.Add(dataStatisticModel);
                                }
                            }
                            else
                            {
                                Variable variable = new Variable();

                                foreach (Variable vs in structuredDataStructure.Variables)
                                {
                                    if (vs.Id == variableId)
                                    {
                                        variable = vs;
                                    }
                                }

                                ApiDataStatisticModel dataStatisticModel = new ApiDataStatisticModel();
                                dt = GetUniqueValues(id, variableId);
                                dataStatisticModel.VariableId   = variableId;
                                dataStatisticModel.uniqueValues = dt;

                                dataStatisticModel.minLength = dt.Compute("Min(length)", string.Empty).ToString();
                                dataStatisticModel.maxLength = dt.Compute("Max(length)", string.Empty).ToString();
                                dataStatisticModel.count     = dt.Compute("Sum(count)", string.Empty).ToString();
                                foreach (var missingValue in variable.MissingValues)
                                {
                                    DataRow workRow = dtMissingValues.NewRow();
                                    workRow["placeholder"] = missingValue.Placeholder;
                                    workRow["displayName"] = missingValue.DisplayName;
                                    dtMissingValues.Rows.Add(workRow);
                                }
                                dataStatisticModel.min           = GetMin(dtMissingValues, dt);
                                dataStatisticModel.max           = GetMax(dtMissingValues, dt);
                                dataStatisticModel.missingValues = dtMissingValues;
                                dataStatisticModels.Add(dataStatisticModel);
                            }
                            dt.Strip();


                            dt.TableName = id + "_data";

                            DatasetModel model = new DatasetModel();
                            model.DataTable = dt;

                            var    response = Request.CreateResponse(HttpStatusCode.OK);
                            string resp     = JsonConvert.SerializeObject(dataStatisticModels);

                            response.Content = new StringContent(resp, System.Text.Encoding.UTF8, "application/json");
                            response.Content.Headers.ContentType = new MediaTypeHeaderValue("application/json");

                            return(response);
                        }
                        else
                        {
                            return(Request.CreateResponse());
                        }
                    }
                    else // has rights?
                    {
                        var request = Request.CreateResponse();
                        request.Content = new StringContent("User has no read right.");

                        return(request);
                    }
                }
                else
                {
                    var request = Request.CreateResponse();
                    request.Content = new StringContent("User is not available.");

                    return(request);
                }
            }
            catch (Exception e)
            {
                throw e;
            }
            finally
            {
                datasetManager.Dispose();
                userManager.Dispose();
                entityPermissionManager.Dispose();
                entityManager.Dispose();
                dataStructureManager.Dispose();
            }
        }
        public void GenerateSeedData()
        {
            #region create entities

            using (var entityManager = new EntityManager())
            {
                // Entities
                Entity entity = entityManager.Entities.Where(e => e.Name.ToUpperInvariant() == "Publication".ToUpperInvariant()).FirstOrDefault();

                if (entity == null)
                {
                    entity                 = new Entity();
                    entity.Name            = "Publication";
                    entity.EntityType      = typeof(Dataset);
                    entity.EntityStoreType = typeof(PublicationStore);
                    entity.UseMetadata     = true;
                    entity.Securable       = true;

                    //add to Extra

                    XmlDocument      xmlDoc           = new XmlDocument();
                    XmlDatasetHelper xmlDatasetHelper = new XmlDatasetHelper();
                    xmlDatasetHelper.AddReferenceToXml(xmlDoc, AttributeNames.name.ToString(), "pub", AttributeType.parameter.ToString(), "extra/modules/module");

                    entity.Extra = xmlDoc;

                    entityManager.Create(entity);
                }
            }


            #endregion

            #region SECURITY

            using (FeatureManager featureManager = new FeatureManager())
                using (OperationManager operationManager = new OperationManager())
                {
                    Feature PublicationFeature = featureManager.FeatureRepository.Get().FirstOrDefault(f => f.Name.Equals("Publications"));
                    if (PublicationFeature == null)
                    {
                        PublicationFeature = featureManager.Create("Publications", "Publications");
                    }

                    Feature PublicationCreationFeature = featureManager.FeatureRepository.Get().FirstOrDefault(f => f.Name.Equals("Publication Creation"));
                    if (PublicationCreationFeature == null)
                    {
                        PublicationCreationFeature = featureManager.Create("Publication Creation", "Publication Creation", PublicationFeature);
                    }

                    Feature PublicationShowFeature = featureManager.FeatureRepository.Get().FirstOrDefault(f => f.Name.Equals("Publication Show"));
                    if (PublicationShowFeature == null)
                    {
                        PublicationShowFeature = featureManager.Create("Publication Show", "Publication Show", PublicationFeature);
                    }

                    operationManager.Create("PUB", "CreatePublication", "*", PublicationCreationFeature);
                    operationManager.Create("PUB", "UploadPublication", "*", PublicationCreationFeature);
                    operationManager.Create("PUB", "ShowPublication", "*", PublicationShowFeature);
                }
            #endregion
        }
Beispiel #29
0
        public void GenerateSeedData()
        {
            ResearchPlanManager      researchPlanManager      = new ResearchPlanManager();
            DataStructureManager     dataStructureManager     = new DataStructureManager();
            UnitManager              unitManager              = new UnitManager();
            EntityManager            entityManager            = new EntityManager();
            FeatureManager           featureManager           = new FeatureManager();
            OperationManager         operationManager         = new OperationManager();
            MetadataStructureManager metadataStructureManager = new MetadataStructureManager();

            try
            {
                #region create none researchPlan

                if (!researchPlanManager.Repo.Get().Any(r => r.Title.Equals("none")))
                {
                    researchPlanManager.Create("none", "If no research plan is used.");
                }

                #endregion create none researchPlan

                #region create none structure

                if (!dataStructureManager.AllTypesDataStructureRepo.Get().Any(d => d.Name.Equals("none")))
                {
                    dataStructureManager.CreateUnStructuredDataStructure("none", "If no data strutcure is used.");
                }

                #endregion create none structure

                #region create none unit

                Dimension dimension = null;

                if (!unitManager.DimensionRepo.Get().Any(d => d.Name.ToLower().Equals("none")))
                {
                    dimension = unitManager.Create("none", "none", "If no unit is used."); // the null dimension should be replaced bz a proper valid one. Javad 11.06
                }
                else
                {
                    dimension = unitManager.DimensionRepo.Get().Where(d => d.Name.ToLower().Equals("none")).FirstOrDefault();
                }

                if (!unitManager.Repo.Get().Any(u => u.Name.ToLower().Equals("none")))
                {
                    unitManager.Create("none", "none", "If no unit is used.", dimension, MeasurementSystem.Unknown);
                }

                #endregion create none unit

                #region create entities

                // Entities
                Entity entity = entityManager.Entities.Where(e => e.Name.ToUpperInvariant() == "Dataset".ToUpperInvariant()).FirstOrDefault();

                if (entity == null)
                {
                    entity                 = new Entity();
                    entity.Name            = "Dataset";
                    entity.EntityType      = typeof(Dataset);
                    entity.EntityStoreType = typeof(Xml.Helpers.DatasetStore);
                    entity.UseMetadata     = true;
                    entity.Securable       = true;

                    //add to Extra

                    XmlDocument      xmlDoc           = new XmlDocument();
                    XmlDatasetHelper xmlDatasetHelper = new XmlDatasetHelper();
                    xmlDatasetHelper.AddReferenceToXml(xmlDoc, AttributeNames.name.ToString(), "ddm", AttributeType.parameter.ToString(), "extra/modules/module");

                    entity.Extra = xmlDoc;

                    entityManager.Create(entity);
                }
                else
                {
                    XmlDocument xmlDoc = new XmlDocument();

                    if (entity.Extra != null)
                    {
                        xmlDoc.AppendChild(entity.Extra);
                    }

                    //update to Extra
                    XmlDatasetHelper xmlDatasetHelper = new XmlDatasetHelper();
                    xmlDatasetHelper.AddReferenceToXml(xmlDoc, AttributeNames.name.ToString(), "ddm", AttributeType.parameter.ToString(), "extra/modules/module");

                    entity.Extra = xmlDoc;

                    entityManager.Update(entity);
                }

                #endregion create entities

                #region SECURITY

                //workflows = größere sachen, vielen operation
                //operations = einzelne actions

                //1.controller-> 1.Operation

                Feature DataCollectionFeature = featureManager.FeatureRepository.Get().FirstOrDefault(f => f.Name.Equals("Data Collection"));
                if (DataCollectionFeature == null)
                {
                    DataCollectionFeature = featureManager.Create("Data Collection", "Data Collection");
                }

                Feature DatasetCreationFeature = featureManager.FeatureRepository.Get().FirstOrDefault(f => f.Name.Equals("Data Creation"));
                if (DatasetCreationFeature == null)
                {
                    DatasetCreationFeature = featureManager.Create("Data Creation", "Data Creation", DataCollectionFeature);
                }

                Feature DatasetUploadFeature = featureManager.FeatureRepository.Get().FirstOrDefault(f => f.Name.Equals("Dataset Upload"));
                if (DatasetUploadFeature == null)
                {
                    DatasetUploadFeature = featureManager.Create("Dataset Upload", "Dataset Upload", DataCollectionFeature);
                }

                Feature ImportDataFeature = featureManager.FeatureRepository.Get().FirstOrDefault(f => f.Name.Equals("Import Data"));
                if (ImportDataFeature == null)
                {
                    ImportDataFeature = featureManager.Create("Import Data", "Easy way to load data into bexis", DataCollectionFeature);
                }

                Feature MetadataManagementFeature = featureManager.FeatureRepository.Get().FirstOrDefault(f => f.Name.Equals("Metadata Management"));
                if (MetadataManagementFeature == null)
                {
                    MetadataManagementFeature = featureManager.Create("Metadata Management", "Metadata Management", DataCollectionFeature);
                }

                #region Help Workflow

                operationManager.Create("DCM", "Help", "*");

                #endregion Help Workflow

                #region Create Dataset Workflow

                operationManager.Create("DCM", "CreateDataset", "*", DatasetCreationFeature);
                operationManager.Create("DCM", "Form", "*");
                operationManager.Create("Api", "DatasetIn", "*", DatasetCreationFeature);
                operationManager.Create("Api", "Dataset", "*", DatasetCreationFeature);
                operationManager.Create("Api", "MetadataIn", "*", DatasetCreationFeature);
                operationManager.Create("Api", "Metadata", "*", DatasetCreationFeature);

                #endregion Create Dataset Workflow

                #region Update Dataset Workflow

                operationManager.Create("DCM", "Submit", "*", DatasetUploadFeature);
                operationManager.Create("DCM", "SubmitChooseUpdateMethod", "*", DatasetUploadFeature);
                operationManager.Create("DCM", "SubmitGetFileInformation", "*", DatasetUploadFeature);
                operationManager.Create("DCM", "SubmitSelectAFile", "*", DatasetUploadFeature);
                operationManager.Create("DCM", "SubmitSpecifyDataset", "*", DatasetUploadFeature);
                operationManager.Create("DCM", "SubmitSummary", "*", DatasetUploadFeature);
                operationManager.Create("DCM", "SubmitValidation", "*", DatasetUploadFeature);

                //Load files to server
                operationManager.Create("DCM", "Push", "*", DatasetUploadFeature);

                operationManager.Create("Api", "DataIn", "*", DatasetUploadFeature);
                operationManager.Create("Api", "Data", "*", DatasetUploadFeature);
                operationManager.Create("Api", "AttachmentIn", "*", DatasetUploadFeature);
                operationManager.Create("Api", "Attachment", "*", DatasetUploadFeature);

                #endregion Update Dataset Workflow

                #region Easy Upload

                operationManager.Create("DCM", "EasyUpload", "*", ImportDataFeature);
                operationManager.Create("DCM", "EasyUploadSelectAFile", "*", ImportDataFeature);
                operationManager.Create("DCM", "EasyUploadSelectAreas", "*", ImportDataFeature);
                operationManager.Create("DCM", "EasyUploadSheetDataStructure", "*", ImportDataFeature);
                operationManager.Create("DCM", "EasyUploadSheetSelectMetaData", "*", ImportDataFeature);
                operationManager.Create("DCM", "EasyUploadSummary", "*", ImportDataFeature);
                operationManager.Create("DCM", "EasyUploadVerification", "*", ImportDataFeature);

                #endregion Easy Upload

                #region Metadata Managment Workflow

                operationManager.Create("DCM", "ImportMetadataStructure", "*", MetadataManagementFeature);
                operationManager.Create("DCM", "ImportMetadataStructureReadSource", "*", MetadataManagementFeature);
                operationManager.Create("DCM", "ImportMetadataStructureSelectAFile", "*", MetadataManagementFeature);
                operationManager.Create("DCM", "ImportMetadataStructureSetParameters", "*", MetadataManagementFeature);
                operationManager.Create("DCM", "ImportMetadataStructureSummary", "*", MetadataManagementFeature);
                operationManager.Create("DCM", "ManageMetadataStructure", "*", MetadataManagementFeature);
                operationManager.Create("DCM", "SubmitSpecifyDataset", "*", MetadataManagementFeature);

                #endregion Metadata Managment Workflow

                #region public available

                //because of reuse in ddm this controller must be public
                // but the funktions should be secured
                operationManager.Create("DCM", "Form", "*");
                operationManager.Create("DCM", "EntityReference", "*");
                //Attachments
                operationManager.Create("DCM", "Attachments", "*");

                #endregion public available

                #endregion SECURITY

                #region Add Metadata


                if (!metadataStructureManager.Repo.Get().Any(m => m.Name.Equals("Basic ABCD")))
                {
                    string titleXPath =
                        "Metadata/Metadata/MetadataType/Description/DescriptionType/Representation/MetadataDescriptionRepr/Title/TitleType";
                    string descriptionXpath =
                        "Metadata/Metadata/MetadataType/Description/DescriptionType/Representation/MetadataDescriptionRepr/Details/DetailsType";

                    ImportSchema("Basic ABCD", "ABCD_2.06.XSD", "DataSet", entity.Name, entity.EntityType.FullName,
                                 titleXPath, descriptionXpath);
                }

                //if (!metadataStructureManager.Repo.Get().Any(m => m.Name.Equals("Full ABCD")))
                //{
                //    string titleXPath =
                //        "Metadata/Metadata/MetadataType/Description/DescriptionType/Representation/MetadataDescriptionRepr/Title/TitleType";
                //    string descriptionXpath =
                //        "Metadata/Metadata/MetadataType/Description/DescriptionType/Representation/MetadataDescriptionRepr/Details/DetailsType";

                //    ImportSchema("Full ABCD", "ABCD_2.06.XSD", "DataSet", entity.Name, entity.EntityType.FullName,
                //        titleXPath, descriptionXpath);

                //}

                if (!metadataStructureManager.Repo.Get().Any(m => m.Name.Equals("GBIF")))
                {
                    string titleXPath       = "Metadata/Basic/BasicType/title/titleType";
                    string descriptionXpath = "Metadata/abstract/abstractType/para/paraType";

                    ImportSchema("GBIF", "eml.xsd", "Dataset", entity.Name, entity.EntityType.FullName, titleXPath,
                                 descriptionXpath);
                }
                //if (!metadataStructureManager.Repo.Get().Any(m => m.Name.Equals("Basic Eml")))
                //    ImportSchema("Basic Eml", "eml-dataset.xsd", entity.Name, entity.Name, entity.EntityType.FullName);

                #endregion Add Metadata
            }
            catch (Exception ex)
            {
                throw ex;
            }
            finally
            {
                researchPlanManager.Dispose();
                dataStructureManager.Dispose();
                unitManager.Dispose();
                entityManager.Dispose();
                featureManager.Dispose();
                operationManager.Dispose();
                metadataStructureManager.Dispose();
            }
        }
Beispiel #30
0
        /// <summary>
        ///
        /// </summary>
        /// <remarks></remarks>
        /// <seealso cref=""/>
        /// <param name="id"></param>
        /// <param name="metadataDoc"></param>
        /// <return></return>
        private void writeBexisIndex(long id, XmlDocument metadataDoc)
        {
            string docId = id.ToString();//metadataDoc.GetElementsByTagName("bgc:id")[0].InnerText;

            var            dataset    = new Document();
            List <XmlNode> facetNodes = facetXmlNodeList;

            dataset.Add(new Field("doc_id", docId, Lucene.Net.Documents.Field.Store.YES, Lucene.Net.Documents.Field.Index.NOT_ANALYZED));
            ///
            /// Add a field to indicte whether the dataset is public, this will be used for the public datasets' search page.
            ///
            dataset.Add(new Field("gen_isPublic", entityPermissionManager.Exists(null, entityTypeId.Value, id) ? "TRUE" : "FALSE", Lucene.Net.Documents.Field.Store.YES, Lucene.Net.Documents.Field.Index.NOT_ANALYZED));

            XmlDatasetHelper xmlDatasetHelper = new XmlDatasetHelper();

            dataset.Add(new Field("gen_entity_name", xmlDatasetHelper.GetEntityName(id), Lucene.Net.Documents.Field.Store.YES, Lucene.Net.Documents.Field.Index.NOT_ANALYZED));


            foreach (XmlNode facet in facetNodes)
            {
                String   multivalued          = facet.Attributes.GetNamedItem("multivalued").Value;
                string[] metadataElementNames = facet.Attributes.GetNamedItem("metadata_name").Value.Split(',');
                String   lucene_name          = facet.Attributes.GetNamedItem("lucene_name").Value;

                foreach (string metadataElementName in metadataElementNames)
                {
                    XmlNodeList elemList = metadataDoc.SelectNodes(metadataElementName);
                    if (elemList != null)
                    {
                        for (int i = 0; i < elemList.Count; i++)
                        {
                            string eleme = elemList[i].InnerText;
                            if (!elemList[i].InnerText.Trim().Equals(""))
                            {
                                dataset.Add(new Field("facet_" + lucene_name, elemList[i].InnerText,
                                                      Lucene.Net.Documents.Field.Store.YES, Field.Index.NOT_ANALYZED));
                                dataset.Add(new Field("ng_all", elemList[i].InnerText,
                                                      Lucene.Net.Documents.Field.Store.YES, Field.Index.ANALYZED));
                                writeAutoCompleteIndex(docId, lucene_name, elemList[i].InnerText);
                                writeAutoCompleteIndex(docId, "ng_all", elemList[i].InnerText);
                            }
                        }
                    }
                }
            }

            List <XmlNode> propertyNodes = propertyXmlNodeList;

            foreach (XmlNode property in propertyNodes)
            {
                String   multivalued          = property.Attributes.GetNamedItem("multivalued").Value;
                String   lucene_name          = property.Attributes.GetNamedItem("lucene_name").Value;
                string[] metadataElementNames = property.Attributes.GetNamedItem("metadata_name").Value.Split(',');

                foreach (string metadataElementName in metadataElementNames)
                {
                    XmlNodeList elemList = metadataDoc.SelectNodes(metadataElementName);
                    if (elemList != null)
                    {
                        String primitiveType = property.Attributes.GetNamedItem("primitive_type").Value;
                        if (elemList[0] != null)
                        {
                            if (primitiveType.ToLower().Equals("string"))
                            {
                                dataset.Add(new Field("property_" + lucene_name, elemList[0].InnerText,
                                                      Lucene.Net.Documents.Field.Store.YES, Field.Index.NOT_ANALYZED));
                                dataset.Add(new Field("ng_all", elemList[0].InnerText,
                                                      Lucene.Net.Documents.Field.Store.YES, Field.Index.ANALYZED));
                                writeAutoCompleteIndex(docId, lucene_name, elemList[0].InnerText);
                                writeAutoCompleteIndex(docId, "ng_all", elemList[0].InnerText);
                            }
                            else if (primitiveType.ToLower().Equals("date"))
                            {
                                //DateTime MyDateTime = DateTime.Now;
                                DateTime MyDateTime = new DateTime();

                                /*String dTFormatElementName = property.Attributes.GetNamedItem("date_format").Value;
                                 * XmlNodeList dtFormatElements = metadataDoc.GetElementsByTagName(dTFormatElementName);
                                 * String dateTimeFormat = dtFormatElements[0].InnerText;*/

                                if (DateTime.TryParse(elemList[0].InnerText, out MyDateTime))
                                {
                                    //MyDateTime = DateTime.ParseExact(elemList[0].InnerText, dateTimeFormat,
                                    //            CultureInfo.InvariantCulture);
                                    long t = MyDateTime.Ticks;

                                    NumericField xyz =
                                        new NumericField("property_numeric_" + lucene_name).SetLongValue(
                                            MyDateTime.Ticks);
                                    String dateToString = MyDateTime.Date.ToString("d",
                                                                                   CultureInfo.CreateSpecificCulture("en-US"));
                                    dataset.Add(xyz);
                                    dataset.Add(new Field("property_" + lucene_name, dateToString,
                                                          Lucene.Net.Documents.Field.Store.NO, Field.Index.NOT_ANALYZED));

                                    writeAutoCompleteIndex(docId, lucene_name, MyDateTime.Date.ToString());
                                    writeAutoCompleteIndex(docId, "ng_all", MyDateTime.Date.ToString());
                                }
                            }
                            else if (primitiveType.ToLower().Equals("integer"))
                            {
                                dataset.Add(
                                    new NumericField("property_numeric" + lucene_name).SetIntValue(
                                        Convert.ToInt32(elemList[0].InnerText)));
                                dataset.Add(new Field("property_" + lucene_name, elemList[0].InnerText,
                                                      Lucene.Net.Documents.Field.Store.NO, Field.Index.NOT_ANALYZED));
                                //  writeAutoCompleteIndex(lucene_name, elemList[0].InnerText);
                            }
                            else if (primitiveType.ToLower().Equals("double"))
                            {
                                dataset.Add(
                                    new NumericField("property_numeric" + lucene_name).SetDoubleValue(
                                        Convert.ToDouble(elemList[0].InnerText)));
                                dataset.Add(new Field("property_" + lucene_name, elemList[0].InnerText,
                                                      Lucene.Net.Documents.Field.Store.NO, Field.Index.NOT_ANALYZED));
                                writeAutoCompleteIndex(docId, lucene_name, elemList[0].InnerText);
                                writeAutoCompleteIndex(docId, "ng_all", elemList[0].InnerText);
                            }
                        }
                    }
                }
            }
            List <XmlNode> categoryNodes = categoryXmlNodeList;

            // add categories to index
            foreach (XmlNode category in categoryNodes)
            {
                String primitiveType = category.Attributes.GetNamedItem("primitive_type").Value;
                String lucene_name   = category.Attributes.GetNamedItem("lucene_name").Value;
                String analysing     = category.Attributes.GetNamedItem("analysed").Value;
                float  boosting      = Convert.ToSingle(category.Attributes.GetNamedItem("boost").Value);
                var    toAnalyse     = Lucene.Net.Documents.Field.Index.NOT_ANALYZED;

                if (analysing.ToLower().Equals("yes"))
                {
                    toAnalyse = Lucene.Net.Documents.Field.Index.ANALYZED;
                }

                if (!category.Attributes.GetNamedItem("type").Value.Equals("primary_data_field"))
                {
                    String multivalued = category.Attributes.GetNamedItem("multivalued").Value;
                    String storing     = category.Attributes.GetNamedItem("store").Value;

                    var toStore = Lucene.Net.Documents.Field.Store.NO;
                    if (storing.ToLower().Equals("yes"))
                    {
                        toStore = Lucene.Net.Documents.Field.Store.YES;
                    }

                    string[] metadataElementNames = category.Attributes.GetNamedItem("metadata_name").Value.Split(',');

                    foreach (string metadataElementName in metadataElementNames)
                    {
                        XmlNodeList elemList = metadataDoc.SelectNodes(metadataElementName);
                        if (elemList != null)
                        {
                            for (int i = 0; i < elemList.Count; i++)
                            {
                                Field a = new Field("category_" + lucene_name, elemList[i].InnerText, toStore, toAnalyse);
                                a.Boost = boosting;
                                dataset.Add(a);
                                dataset.Add(new Field("ng_" + lucene_name, elemList[i].InnerText,
                                                      Lucene.Net.Documents.Field.Store.YES, Lucene.Net.Documents.Field.Index.ANALYZED));
                                dataset.Add(new Field("ng_all", elemList[i].InnerText,
                                                      Lucene.Net.Documents.Field.Store.YES, Lucene.Net.Documents.Field.Index.ANALYZED));
                                writeAutoCompleteIndex(docId, lucene_name, elemList[i].InnerText);
                                writeAutoCompleteIndex(docId, "ng_all", elemList[i].InnerText);
                            }
                        }
                    }
                }
                else
                {
                    //if the primary data index exist in the config - this means the primary data should be indexed
                    includePrimaryData = true;
                }
            }

            indexPrimaryData(id, categoryNodes, ref dataset, docId, metadataDoc);

            List <XmlNode> generalNodes = generalXmlNodeList;

            foreach (XmlNode general in generalNodes)
            {
                String multivalued   = general.Attributes.GetNamedItem("multivalued").Value;
                String primitiveType = general.Attributes.GetNamedItem("primitive_type").Value;
                String lucene_name   = general.Attributes.GetNamedItem("lucene_name").Value;

                String storing   = general.Attributes.GetNamedItem("store").Value;
                String analysing = general.Attributes.GetNamedItem("analysed").Value;

                var toStore   = Lucene.Net.Documents.Field.Store.NO;
                var toAnalyse = Lucene.Net.Documents.Field.Index.NOT_ANALYZED;

                if (storing.ToLower().Equals("yes"))
                {
                    toStore = Lucene.Net.Documents.Field.Store.YES;
                }
                if (analysing.ToLower().Equals("yes"))
                {
                    toAnalyse = Lucene.Net.Documents.Field.Index.ANALYZED;
                }
                float boosting = Convert.ToSingle(general.Attributes.GetNamedItem("boost").Value);

                string[] metadataElementNames = general.Attributes.GetNamedItem("metadata_name").Value.Split(',');

                foreach (string metadataElementName in metadataElementNames)
                {
                    XmlNodeList elemList = metadataDoc.SelectNodes(metadataElementName);
                    for (int i = 0; i < elemList.Count; i++)
                    {
                        Field a = new Field(lucene_name, elemList[i].InnerText, toStore, toAnalyse);
                        a.Boost = boosting;
                        dataset.Add(a);
                        dataset.Add(new Field("ng_all", elemList[i].InnerText, Lucene.Net.Documents.Field.Store.NO, Field.Index.ANALYZED));
                        writeAutoCompleteIndex(docId, lucene_name, elemList[i].InnerText);
                        writeAutoCompleteIndex(docId, "ng_all", elemList[i].InnerText);
                    }
                }
            }

            indexWriter.AddDocument(dataset);
        }