public void testXicReadFullRange()
{
var testRawFile = Path.Combine(AppDomain.CurrentDomain.BaseDirectory, @"Data/small.RAW");
XicData xicData = new XicData
{
// test the full range
Content = new List <XicUnit>
{
new XicUnit()
{
Meta = new XicMeta()
{
MzStart = null,
MzEnd = null,
RtStart = null,
RtEnd = null
}
}
}
};
XicReader.ReadXic(testRawFile, false, xicData);
XicUnit xicUnit = xicData.Content[0];
Assert.AreEqual(14, ((Array)xicUnit.RetentionTimes).Length);
Assert.AreEqual(14, ((Array)xicUnit.Intensities).Length);
Assert.AreEqual(140, xicUnit.Meta.MzStart, 0.01);
Assert.AreEqual(2000, xicUnit.Meta.MzEnd, 0.01);
Assert.AreEqual(0.004935, xicUnit.Meta.RtStart, 0.01);
Assert.AreEqual(0.4872366666, xicUnit.Meta.RtEnd, 0.01);
}
public void testXicRead()
{
var testRawFile = Path.Combine(AppDomain.CurrentDomain.BaseDirectory, @"Data/small2.RAW");
XicData xicData = new XicData
{
// test the full retention time range
Content = new List <XicUnit>
{
new XicUnit()
{
Meta = new XicMeta()
{
MzStart = 749.786,
MzEnd = 749.8093,
RtStart = null,
RtEnd = null
}
}
}
};
XicReader.ReadXic(testRawFile, false, xicData);
XicUnit xicUnit = xicData.Content[0];
Assert.AreEqual(46, ((Array)xicUnit.RetentionTimes).Length);
Assert.AreEqual(46, ((Array)xicUnit.Intensities).Length);
Assert.AreEqual(749.786, xicUnit.Meta.MzStart, 0.01);
Assert.AreEqual(749.8093, xicUnit.Meta.MzEnd, 0.01);
Assert.AreEqual(10, xicUnit.Meta.RtStart, 0.01);
Assert.AreEqual(10.98, xicUnit.Meta.RtEnd, 0.01);
xicData = new XicData
{
// test the nonsensical retention time range
Content = new List <XicUnit>
{
new XicUnit()
{
Meta = new XicMeta()
{
MzStart = 749.786,
MzEnd = 749.8093,
RtStart = 300,
RtEnd = 400
}
}
}
};
XicReader.ReadXic(testRawFile, false, xicData);
xicUnit = xicData.Content[0];
Assert.AreEqual(1, ((Array)xicUnit.RetentionTimes).Length);
Assert.AreEqual(1, ((Array)xicUnit.Intensities).Length);
Assert.AreEqual(749.786, xicUnit.Meta.MzStart, 0.01);
Assert.AreEqual(749.8093, xicUnit.Meta.MzEnd, 0.01);
Assert.AreEqual(300, xicUnit.Meta.RtStart, 0.01);
Assert.AreEqual(400, xicUnit.Meta.RtEnd, 0.01);
}