private void buttonSearchAll_Click(object sender, EventArgs e)
{
//Check if we have the results already loaded
try
{
checkIfResultsAreLoaded();
}
catch
{
MessageBox.Show("Please verify the result report", "Error");
return;
}
//Collect the search all parameters
SearchAll searchAllWindow = new SearchAll();
searchAllWindow.ShowDialog();
//Make sure he pressed the work button
if (!searchAllWindow.Work)
{
return;
}
//Now lets rock!
double hypeGeoPValueCutoff = searchAllWindow.HyperGeometricPValueCutOff;
int minimumNumberOfTerms = searchAllWindow.MinimumNumberOfTerms;
bool useFDR = searchAllWindow.FDR;
double FDRAlfa = searchAllWindow.FDRAlfa;
int minimumDepth = searchAllWindow.MinimumDepth;
//Give them the wait window
WaitWindow ww = new WaitWindow();
System.Threading.Thread tt = new System.Threading.Thread(new System.Threading.ThreadStart(ww.ShowWindow));
tt.Start();
//Analyze all terms
if (termScoreAnalysisListForAllParameters.Count == 0)
{
ww.ChangeLowerLable("Please wait... evaluating for " + gt.Terms.Count.ToString() + " terms.");
termScoreAnalysisListForAllParameters = (from toEvaluate in gt.Terms.AsParallel()
select termScoreCalculator.calculate(toEvaluate, false, true)).ToList();
}
//Performing post processing;
//sort the arrays
if (useFDR)
{
//Sorts ascending by pvalue then by foldChange
termScoreAnalysisListForAllParameters.Sort((a, b) => a.FoldChange.CompareTo(b.FoldChange));
termScoreAnalysisListForAllParameters.Sort((a, b) => a.CummulativeHypeGeo.CompareTo(b.CummulativeHypeGeo));
}
//Prepare the array for plotting
List <TermScoreCalculator.TermScoreAnalysis> termToPlot = new List <TermScoreCalculator.TermScoreAnalysis>();
int counter2 = 0;
foreach (TermScoreCalculator.TermScoreAnalysis tsc in termScoreAnalysisListForAllParameters)
{
counter2++;
if (tsc.CummulativeHypeGeo <= hypeGeoPValueCutoff && tsc.AbsoluteFoldChange > 1 && tsc.IdentifiedTermsInStudySet >= minimumNumberOfTerms)
{
if (useFDR)
{
double FDRCutoff = (FDRAlfa * counter2) / termScoreAnalysisListForAllParameters.Count;
if (tsc.CummulativeHypeGeo <= FDRCutoff)
{
termToPlot.Add(tsc);
}
}
else
{
termToPlot.Add(tsc);
}
}
}
//Plotting
PlotPieDotAndUpdateTable(termToPlot, minimumDepth);
//Shut down our wait window
tt.Abort();
}