public IVector[] GetObservedLocalization(IObservationDescriptions observationDescriptions, double distance)
{
/* Return identity localization */
// Console.Out.WriteLine("Return identity localization");
int nObs = observationDescriptions.ObservationCount;
IVector locvec = new VectorJ2N(state.Size);
IVector[] result = new IVector[nObs];
for (int iObs = 0; iObs < nObs; iObs++)
{
locvec.SetConstant(1.0);
result[iObs] = locvec;
}
return(result);
}
/**
* Compute time derivative of state at current time.
* This is used by the time-integration "mod.compute(t)" as the core of the model.
* @return vector dt
*/
protected override IVector Dx(IVector xt, double t)
{
IVector result = new VectorJ2N(2);
// The oscillator model
//
// simple linear oscilator (e.g. mass-spring system with friction)
//% d(x)/d(t) = u
// d(u)/d(t) = - omega^2 * x - (2/t_damp) u
//
double[] x = xt.Values;
double omega = Math.Max(0.0, parameterValues[omegaId]);
double tDamp = Math.Max(0.0, parameterValues[tDampId]);
result.SetValue(0, x[1]);
result.SetValue(1, -(omega * omega) * x[0] - (2.0 / tDamp * x[1]));
return(result);
}
public IModelState LoadPersistentState(string persistentStateFile)
{
VectorJ2N x;
double persistentTimeStamp;
int timestep;
try
{
if (!File.Exists(persistentStateFile))
{
throw new Exception("Could not find file for saved state:" + persistentStateFile);
}
// read state and time from file
StreamReader buff = new StreamReader(persistentStateFile);
// Read and parse first line
string line = buff.ReadLine();
string[] keyValuePair = line.Split(new[] { '=' }); // expect eg x=[1.0,2.0,3.0]
x = new VectorJ2N(keyValuePair[1]);
// Read and parse second line
line = buff.ReadLine();
keyValuePair = line.Split(new[] { '=' }); // expect eg t=1.0
persistentTimeStamp = Double.Parse(keyValuePair[1]);
// Read and parse third line
line = buff.ReadLine();
keyValuePair = line.Split(new[] { '=' }); // expect eg timestep=3
timestep = Int32.Parse(keyValuePair[1]);
buff.Close();
}
catch (IOException e)
{
ResultsJ2N.PutMessage("Exception: " + e.Message);
throw new Exception("Error reading restart file for model");
}
// set state and time
SavedState saveState = new SavedState();
saveState.time = persistentTimeStamp;
saveState.timestep = timestep;
saveState.state = x;
return(saveState);
}
//
//Most data structures are contained in AbstractModelInstance
//The abstract SimpleModel is based on the following items. Make
//sure you put your data in the proper items
//
//- parameters of the model that can be used as control variables with their statistics
// java.util.Hashtable<String,Double> parameters=null;
//- Internal state of the model
// Vector state=null;
//- Current time
// double t;
// int timeStep; //integer value is used for testing equality and counting
//- Parameters used for calibration
// java.util.Vector<String> ParNames=null;
// Vector Pars=null; //present values as a vector
//- System noise for Kalman filtering, as standarddeviation per unit time
// Vector sysNoiseIntensity=null;
//
public SimpleOscillatorModelInstance(string workingDir, string configString)
{
//
// DEFAULTS
//
// parameters of the model (deterministic part)
parameterValues.Add(tDampId, 8.0); //characteristic time-scale for friction [seconds]
parameterValues.Add("omega", 0.25 * 2.0 * Math.PI); //oscilation frequency [rad/s]
// timespan for the simulation
AddOrSetParameter(StartTimeId, 0.0);
AddOrSetParameter(StopTimeId, 10.0);
AddOrSetParameter(TimeStepId, 0.05);
// Internal state of the model
state = new VectorJ2N("[0.8,0.0]");
//
// now parse configuration
//
Initialize(workingDir, configString);
}
public IVector GetObservedValues(IObservationDescriptions descr)
{
IVector result = new VectorJ2N(descr.ObservationCount);
// TODO: handle TimeSeriesObservationDescriptions
IVector obsTimes = descr.GetValueProperties("time");
IVector obsIndex = descr.GetValueProperties("index") ?? descr.GetValueProperties("xPosition");
IVector transformIndex;
try
{
transformIndex = descr.GetValueProperties("transform");
}
catch (Exception)
{
transformIndex = null;
}
Time tHor = new Time(parameterValues[StartTimeId],
parameterValues[StopTimeId])
;
tHor.StepMJD = parameterValues[TimeStepId];
if (storeObs)
{
//work from stored states
for (int i = 0; i < descr.ObservationCount; i++)
{
// at which timestep is this obs
long iObs = Utils.GetTimeStep(tHor, (new Time(obsTimes.GetValue(i))));
// find corresponding storage location
int thisTIndex = iStore.IndexOf((int)iObs); //time index in storage
if (thisTIndex < 0)
{
throw (new Exception("model.getValues: time out of range for observation nr. " + i));
}
int thisXIndex = (int)obsIndex.GetValue(i);
if ((thisXIndex < 0) | (thisXIndex >= state.Size))
{
throw (new Exception("model.getValues: index out of range for "
+ " observation nr. " + i
+ " index= " + thisXIndex));
}
//Console.Out.WriteLine("i="+i+" it="+thisTIndex+" ind= "+thisXIndex);
double thisValue = xStore[thisTIndex].GetValue(thisXIndex);
// transform values if needed
if (transformIndex != null)
{
if (transformIndex.GetValue(i) == 2)
{
// magic number for quadratic observations
thisValue = thisValue * thisValue;
}
}
result.SetValue(i, thisValue);
}
}
else
{
// only current state is available
for (int i = 0; i < descr.ObservationCount; i++)
{
int thisXIndex = (int)obsIndex.GetValue(i);
//TODO if(){ //check time
double thisValue = state.GetValue(thisXIndex);
// transform values if needed
if (transformIndex != null)
{
if (transformIndex.GetValue(i) == 2)
{
// magic number for quadratic observations
thisValue = thisValue * thisValue;
}
}
result.SetValue(i, thisValue);
}
}
return(result);
}
public void Initialize(string workingDir, string configstring)
{
//
// GENERIC PART
//
// Instance counter
thisInstanceNumber = nextinstanceNumber;
nextinstanceNumber++;
//now parse configuration
//
// <?xml version="1.0" encoding="UTF-8"?>
// <oscillatorConfig>
//<simulationTimespan>[0.0,0.05,10.0]</simulationTimespan>
//<parameters names="t_damp,omega">[8.0,1.5708]</parameters>
//<parameterUncertainty names="t_damp,omega">[1.0,0.1257]</parameterUncertainty>
//<systemNoise>{[0.0,0.0],[0.3,0.3]}</systemNoise>
//<initialState>[0.8,0.0]</initialState>
//<initialStateUncertainty>[0.8,0.8]</initialStateUncertainty>
//</oscillatorConfig>
//
ResultsJ2N.PutMessage("configstring = " + configstring);
conf = new ConfigTreeJ2N(workingDir, configstring);
//
// parse simulationTimespan
//
// <simulationTimespan>[0.0,0.05,10.0]</simulationTimespan>
string timespanstring = conf.GetContentstring("simulationTimespan");
if (timespanstring != null)
{
IVector timespanVector = new VectorJ2N(timespanstring);
AddOrSetParameter(StartTimeId, timespanVector.GetValue(0));
AddOrSetParameter(TimeStepId, timespanVector.GetValue(1));
AddOrSetParameter(StopTimeId, timespanVector.GetValue(2));
ResultsJ2N.PutMessage("simulationTimespan =" + timespanVector);
}
// start at initial time
t = parameterValues[StartTimeId];
timeStep = 0; //counter starts at 0
//
// parse parameters
//
string namestring = conf.GetAsstring("parameters@names", "");
string parstring = conf.GetContentstring("parameters");
if (parstring != null)
{
IVector parValues = new VectorJ2N(parstring);
ResultsJ2N.PutMessage("parameters@names =" + namestring + " parameters=" + parValues);
string[] names = namestring.Split(new[] { ',' });
for (int i = 0; i < names.Length; i++)
{
if (!parameterValues.ContainsKey(names[i]))
{
parameterValues.Add(names[i], parValues.GetValue(i));
}
else
{
ResultsJ2N.PutMessage("parameter " + names[i] + " was not recognized. Value was ignored.");
}
}
}
CreateExchangeItems();
AddExchangeItemsAfterInitialisation();
}
