private void FillValues(TerminologyOperation termOp, string version, string code, string filter, string vsIdentifier, int offsetNo, int countNo)
{
this.GetVsProperties(vsIdentifier);
this.valueSet = new ValueSet();
this.codeSystem = new CodeSystem();
this.valueSet.Id = this.vsId;
this.codeSystem.Id = "NZMT";
this.codeSystem.CaseSensitive = false;
this.codeSystem.Content = CodeSystem.CodeSystemContentMode.NotPresent;
this.codeSystem.Experimental = false;
this.codeSystem.Compositional = false;
this.codeSystem.VersionNeeded = false;
// Code System properties
this.codeSystem.Property.Add(new CodeSystem.PropertyComponent {
Code = "substance", Description = "The Generic Substance (Medicinal Product) & ingredient data relating to this Code.", Type = CodeSystem.PropertyType.Code
});
// there is no Value Set that contains the whole of NZMT
//this.codeSystem.ValueSet = "http://nzmt.org.nz/vs";
this.valueSet.Url = this.vsURL;
this.codeSystem.Url = NzMt.URI;
this.valueSet.Title = this.vsTitle;
this.codeSystem.Title = NzMt.TITLE;
this.valueSet.Name = this.valueSet.Id;
this.codeSystem.Name = this.codeSystem.Id;
this.valueSet.Description = new Markdown(this.vsDescription);
this.codeSystem.Description = new Markdown(NzMt.DESCRIPTION);
this.valueSet.Version = NzMt.CURRENT_VERSION;
this.codeSystem.Version = NzMt.CURRENT_VERSION;
this.valueSet.Experimental = true;
this.valueSet.Status = PublicationStatus.Active;
this.codeSystem.Status = PublicationStatus.Active;
this.valueSet.Date = Hl7.Fhir.Model.Date.Today().Value;
this.codeSystem.Date = Hl7.Fhir.Model.Date.Today().Value;
this.valueSet.Publisher = "Patients First Ltd";
this.codeSystem.Publisher = "nzulm.org.nz";
this.valueSet.Copyright = new Markdown("© 2010+ New Zealand Crown Copyright");
this.codeSystem.Copyright = new Markdown("© 2010+ New Zealand Crown Copyright");
ContactPoint cp = new ContactPoint {
System = ContactPoint.ContactPointSystem.Email, Value = "*****@*****.**"
};
ContactDetail cd = new ContactDetail();
cd.Telecom.Add(cp);
this.valueSet.Contact.Add(cd);
this.codeSystem.Contact.Add(cd);
ValueSet.ConceptSetComponent cs = new ValueSet.ConceptSetComponent();
ValueSet.ExpansionComponent es = new ValueSet.ExpansionComponent();
cs.System = this.codeSystem.Url;
cs.Version = this.codeSystem.Version;
if (!string.IsNullOrEmpty(vsIdentifier))
{
cs.Filter.Add(new ValueSet.FilterComponent {
Property = "TermType", Op = FilterOperator.Equal, Value = vsIdentifier
});
}
string codeCode = string.Empty;
string codeDisplay = string.Empty;
string codeDefinition = string.Empty;
if ((string.IsNullOrEmpty(version) || version == cs.Version) && termOp != TerminologyOperation.define_cs)
{
if (termOp != TerminologyOperation.define_vs)
{
List <Coding> codeVals = new List <Coding>();
if (termOp == TerminologyOperation.lookup || termOp == TerminologyOperation.validate_code)
{
codeVals = NzUlmSearch.GetNzmtCombinedByCode(code);
if (codeVals.Count > 0 || termOp == TerminologyOperation.validate_code)
{
// create filter as need to subsequently check that it belongs in the passed Value Set
filter = codeVals[0].Display;
}
}
if (termOp == TerminologyOperation.expand || termOp == TerminologyOperation.validate_code)
{
if (vsId.StartsWith("NZULM-PT-"))
{
codeVals = NzUlmSearch.GetNZULMPrescribingTerms(filter, vsId.Replace("NZULM-PT-", "").ToLower());
}
else if (vsId == "NZULM-CTPP")
{
codeVals = NzUlmSearch.GetContaineredTradeProductPackByTerm(filter);
}
else if (vsId == "NZULM-MP")
{
codeVals = NzUlmSearch.GetMedicinalProductByTerm(filter);
}
else if (vsId == "NZULM-MPP")
{
codeVals = NzUlmSearch.GetMedicinalProductPackByTerm(filter);
}
else if (vsId == "NZULM-MPUU")
{
codeVals = NzUlmSearch.GetMedicinalProductUnitOfUseByTerm(filter);
}
else if (vsId == "NZULM-TP")
{
codeVals = NzUlmSearch.GetTradeProductByTerm(filter);
}
else if (vsId == "NZULM-TPP")
{
codeVals = NzUlmSearch.GetTradeProductPackByTerm(filter);
}
else if (vsId == "NZULM-TPUU")
{
codeVals = NzUlmSearch.GetTradeProductUnitOfUseByTerm(filter);
}
else
{
throw new Exception(TerminologyValueSet.UNFOUND_VALUESET);
}
}
// filtering performed at DB Layer, so add all returned concepts
foreach (Coding codeVal in codeVals)
{
ValueSet.DesignationComponent desig = new ValueSet.DesignationComponent {
ElementId = "NZULM", Value = codeVal.Version
};
cs.Concept.Add(new ValueSet.ConceptReferenceComponent {
Code = codeVal.Code, Display = codeVal.Display
});
es.Contains.Add(new ValueSet.ContainsComponent {
Code = codeVal.Code, Display = codeVal.Display, System = cs.System
});
this.codeSystem.Concept.Add(new CodeSystem.ConceptDefinitionComponent {
Code = codeVal.Code, Display = codeVal.Display, Definition = codeVal.Version, ElementId = codeVal.ElementId
});
}
if (termOp == TerminologyOperation.expand || termOp == TerminologyOperation.validate_code)
{
this.valueSet = TerminologyValueSet.AddExpansion(this.valueSet, es, offsetNo, countNo);
}
else if (termOp == TerminologyOperation.define_vs)
{
this.valueSet.Compose = new ValueSet.ComposeComponent();
this.valueSet.Compose.Include.Add(cs);
}
}
else
{
this.valueSet.Compose = new ValueSet.ComposeComponent();
this.valueSet.Compose.Include.Add(cs);
}
}
}
private void FillValues(TerminologyOperation termOp, string version, string code, string filter, string vsIdentifier, int offsetNo, int countNo)
{
this.valueSet = new ValueSet();
this.codeSystem = new CodeSystem();
string idSuffix = filter.Replace(" ", "_");
this.valueSet.Id = "fhir_rxnorm_vs_" + idSuffix;
this.codeSystem.Id = "RXNORM";
this.codeSystem.CaseSensitive = false;
this.codeSystem.Content = CodeSystem.CodeSystemContentMode.NotPresent;
this.codeSystem.Experimental = false;
this.codeSystem.Compositional = false;
this.codeSystem.VersionNeeded = false;
// Code System properties
//this.codeSystem.Property.Add(new CodeSystem.PropertyComponent { Code = "substance", Description = "The Generic Substance (Medicinal Product) & ingredient data relating to this Code.", Type = CodeSystem.PropertyType.Code });
// Value Set that contains all RxNorm CUIs
this.codeSystem.ValueSet = "http://www.nlm.nih.gov/research/umls/rxnorm/vs";
this.valueSet.Url = ServerCapability.TERMINZ_CANONICAL + "/ValueSet/rxnorm/" + idSuffix;
this.codeSystem.Url = FhirRxNorm.URI;
this.valueSet.Title = FhirRxNorm.TITLE;
this.codeSystem.Title = FhirRxNorm.TITLE;
this.valueSet.Name = this.valueSet.Id;
this.codeSystem.Name = this.codeSystem.Id;
this.valueSet.Description = new Markdown(FhirRxNorm.DESCRIPTION);
this.codeSystem.Description = new Markdown(FhirRxNorm.DESCRIPTION);
this.valueSet.Version = FhirRxNorm.CURRENT_VERSION;
this.codeSystem.Version = FhirRxNorm.CURRENT_VERSION;
this.valueSet.Experimental = true;
this.valueSet.Status = PublicationStatus.Active;
this.codeSystem.Status = PublicationStatus.Active;
this.valueSet.Date = Hl7.Fhir.Model.Date.Today().Value;
this.codeSystem.Date = Hl7.Fhir.Model.Date.Today().Value;
this.valueSet.Publisher = "Patients First Ltd";
this.codeSystem.Publisher = "http://www.nlm.nih.gov/";
this.valueSet.Copyright = new Markdown("Unified Medical Language System® (UMLS®)");
this.codeSystem.Copyright = new Markdown("Unified Medical Language System® (UMLS®)");
ContactPoint cp = new ContactPoint {
System = ContactPoint.ContactPointSystem.Email, Value = "*****@*****.**"
};
ContactDetail cd = new ContactDetail();
cd.Telecom.Add(cp);
this.valueSet.Contact.Add(cd);
this.codeSystem.Contact.Add(cd);
ValueSet.ConceptSetComponent cs = new ValueSet.ConceptSetComponent();
ValueSet.ExpansionComponent es = new ValueSet.ExpansionComponent();
cs.System = this.codeSystem.Url;
cs.Version = this.codeSystem.Version;
//if (!string.IsNullOrEmpty(vsIdentifier))
//{
// cs.Filter.Add(new ValueSet.FilterComponent { Property = "TTY", Op = FilterOperator.Equal, Value = vsIdentifier });
//}
string codeCode = string.Empty;
string codeDisplay = string.Empty;
string codeDefinition = string.Empty;
if ((string.IsNullOrEmpty(version) || version == cs.Version) && termOp != TerminologyOperation.define_cs)
{
if (termOp != TerminologyOperation.define_vs)
{
List <Coding> codeVals = new List <Coding>();
if (termOp == TerminologyOperation.lookup || termOp == TerminologyOperation.validate_code)
{
codeVals = RxNormSearch.GetConceptByCode(code);
if (codeVals.Count > 0 || termOp == TerminologyOperation.validate_code)
{
// create filter as need to subsequently check that it belongs in the passed Value Set
filter = codeVals[0].Display;
}
}
if (termOp == TerminologyOperation.expand || termOp == TerminologyOperation.validate_code)
{
codeVals = RxNormSearch.GetConceptsByTerm(filter);
}
// filtering performed at DB Layer, so add all returned concepts
foreach (Coding codeVal in codeVals)
{
ValueSet.DesignationComponent desig = new ValueSet.DesignationComponent {
ElementId = "RXNORM", Value = codeVal.Version
};
cs.Concept.Add(new ValueSet.ConceptReferenceComponent {
Code = codeVal.Code, Display = codeVal.Display
});
es.Contains.Add(new ValueSet.ContainsComponent {
Code = codeVal.Code, Display = codeVal.Display, System = cs.System
});
this.codeSystem.Concept.Add(new CodeSystem.ConceptDefinitionComponent {
Code = codeVal.Code, Display = codeVal.Display, Definition = codeVal.Version, ElementId = codeVal.ElementId
});
}
if (termOp == TerminologyOperation.expand || termOp == TerminologyOperation.validate_code)
{
this.valueSet = TerminologyValueSet.AddExpansion(this.valueSet, es, offsetNo, countNo);
}
else if (termOp == TerminologyOperation.define_vs)
{
this.valueSet.Compose = new ValueSet.ComposeComponent();
this.valueSet.Compose.Include.Add(cs);
}
}
else
{
this.valueSet.Compose = new ValueSet.ComposeComponent();
this.valueSet.Compose.Include.Add(cs);
}
}
}
