private bool SaveColonyPicking(QbotPostModel postModel)
{
ValidateColonyPicking(postModel);
if (ModelState.IsValid)
{
var userJob = new UserJob();
var userJobColonyPicking = new UserJobQbotColonyPicking();
AutoMapper.Mapper.Map(postModel, userJob);
AutoMapper.Mapper.Map(postModel, userJobColonyPicking);
userJob.UserJobQbotColonyPicking = userJobColonyPicking;
userJob.User = GetCurrentUser(true);
userJob.RechargeAccount = postModel.RechargeAccount;
if (postModel.Strain.IsOther())
{
var strain = new Strain()
{
Name = postModel.NewStrain, Bacteria = postModel.Bacteria, Supplied = false
};
userJob.UserJobQbotColonyPicking.Strain = strain;
}
if (postModel.Vector.IsOther())
{
var vector = new Vector()
{
Name = postModel.NewVector, VectorType = postModel.VectorType, Antibiotic1 = postModel.Antibiotic1, Antibiotic2 = postModel.Antibiotic2
};
userJob.UserJobQbotColonyPicking.Vector = vector;
}
// add plate
var stage = _repositoryFactory.StageRepository.GetNullableById(StageIds.QpWebSubmittedPlates);
var barcode = new Barcode()
{
Stage = stage
};
var userJobPlate = new UserJobPlate()
{
Name = userJob.Name
};
userJobPlate.AddBarcode(barcode);
userJob.AddUserJobPlates(userJobPlate);
_repositoryFactory.UserJobRepository.EnsurePersistent(userJob);
return(true);
}
return(false);
}
/// <summary>
/// Adds the plates necessary for the original submission
/// </summary>
/// <param name="plateNames"></param>
/// <param name="userJob"></param>
private void AddPlates(List <string> plateNames, UserJob userJob, JobType jobType)
{
// figure out the stage
Stage stage = null;
switch (jobType.Id)
{
case (int)JobTypeIds.BacterialClone:
stage = _repositoryFactory.StageRepository.GetNullableById(StageIds.BcWebSubmittedPlates);
break;
case (int)JobTypeIds.PCRProduct:
stage = _repositoryFactory.StageRepository.GetNullableById(StageIds.PcrWebSubmittedPlates);
break;
case (int)JobTypeIds.UserRunSequencing:
stage = _repositoryFactory.StageRepository.GetNullableById(StageIds.UrsWebSubmittedPlates);
break;
case (int)JobTypeIds.PurifiedDna:
stage = _repositoryFactory.StageRepository.GetNullableById(StageIds.PdWebSubmittedPlates);
break;
case (int)JobTypeIds.Sublibrary:
stage = _repositoryFactory.StageRepository.GetNullableById(StageIds.SlWebSubmittedPlates);
break;
}
if (stage == null)
{
throw new ArgumentException("JobType");
}
foreach (var name in plateNames)
{
var plate = new UserJobPlate()
{
Name = name
};
var barcode = new Barcode()
{
Stage = stage
};
plate.AddBarcode(barcode);
userJob.AddUserJobPlates(plate);
}
}
public ActionResult Create(int?id, GenotypingPostModel postModel)
{
JobType jobType = null;
// 2012-10-03 by kjt: Added missing logic to create barcodes using sequencing controller as example.
// Added 2013-10-03 by kjt
Stage stage = null;
if (id.HasValue)
{
jobType = _repositoryFactory.JobTypeRepository.GetNullableById(id.Value);
// check the job type
if (!jobType.Genotyping)
{
Message = "Invalid job type specified";
return(RedirectToAction("Create"));
}
// Added 2013-10-03 by kjt
stage = _repositoryFactory.StageRepository.GetNullableById(StageIds.UgWebSubmittedPlates);
postModel.JobType = jobType;
}
ValidateGenotyping(postModel);
if (ModelState.IsValid)
{
var userJob = new UserJob();
AutoMapper.Mapper.Map(postModel, userJob);
userJob.UserJobGenotyping = new UserJobGenotyping();
userJob.User = GetCurrentUser(true);
userJob.RechargeAccount = postModel.RechargeAccount;
foreach (var did in postModel.Dyes)
{
userJob.UserJobGenotyping.Dyes.Add(_repositoryFactory.DyeRepository.GetById(did));
}
foreach (var name in postModel.PlateNames)
{
var plate = new UserJobPlate()
{
Name = name
};
// Added 2013-10-03 by kjt
var barcode = new Barcode()
{
Stage = stage
};
// Added 2013-10-03 by kjt
plate.AddBarcode(barcode);
userJob.AddUserJobPlates(plate);
}
_repositoryFactory.UserJobRepository.EnsurePersistent(userJob);
Message = "Your job request has been successfully submitted.";
return(RedirectToAction("Index", "Authorized"));
}
var user = GetCurrentUser();
var viewModel = GenotypingViewModel.Create(_repositoryFactory, user, jobType, postModel);
return(View(viewModel));
}
/// <summary>
/// Adds the plates necessary for the original submission
/// </summary>
/// <param name="plateNames"></param>
/// <param name="userJob"></param>
private void AddPlates(List<string> plateNames, UserJob userJob, JobType jobType)
{
// figure out the stage
Stage stage = null;
switch(jobType.Id)
{
case (int)JobTypeIds.BacterialClone:
stage = _repositoryFactory.StageRepository.GetNullableById(StageIds.BcWebSubmittedPlates);
break;
case (int)JobTypeIds.PCRProduct:
stage = _repositoryFactory.StageRepository.GetNullableById(StageIds.PcrWebSubmittedPlates);
break;
case (int)JobTypeIds.UserRunSequencing:
stage = _repositoryFactory.StageRepository.GetNullableById(StageIds.UrsWebSubmittedPlates);
break;
case (int)JobTypeIds.PurifiedDna:
stage = _repositoryFactory.StageRepository.GetNullableById(StageIds.PdWebSubmittedPlates);
break;
case (int)JobTypeIds.Sublibrary:
stage = _repositoryFactory.StageRepository.GetNullableById(StageIds.SlWebSubmittedPlates);
break;
}
if (stage == null)
{
throw new ArgumentException("JobType");
}
foreach(var name in plateNames)
{
var plate = new UserJobPlate() {Name = name};
var barcode = new Barcode() {Stage = stage};
plate.AddBarcode(barcode);
userJob.AddUserJobPlates(plate);
}
}
