public void UnitDefinitionElement(Hashtable attrs)
{
UnitDefinition unitDef = new UnitDefinition(this.model, attrs);
unitDef.createUnitsList();
this.model.listOfUnitDefinitions.Add(unitDef);
elementStack.Push(unitDef);
}
public static int Main(string[] args)
{
if (args.Length != 1)
{
Console.WriteLine("Usage: printNotes filename");
return(1);
}
int i, j;
string filename = args[0];
SBMLDocument document;
document = libsbml.readSBML(filename);
int errors = (int)document.getNumErrors();
Console.WriteLine();
Console.WriteLine("filename: " + filename);
Console.WriteLine();
if (errors > 0)
{
document.printErrors();
return(errors);
}
/* Model */
Model m = document.getModel();
printNotes(m);
for (i = 0; i < m.getNumReactions(); i++)
{
Reaction re = m.getReaction(i);
printNotes(re);
/* SpeciesReference (Reacatant) */
for (j = 0; j < re.getNumReactants(); j++)
{
SpeciesReference rt = re.getReactant(j);
if (rt.isSetNotes())
{
Console.WriteLine(" ");
}
printNotes(rt, (rt.isSetSpecies() ? rt.getSpecies() : ""));
}
/* SpeciesReference (Product) */
for (j = 0; j < re.getNumProducts(); j++)
{
SpeciesReference rt = re.getProduct(j);
if (rt.isSetNotes())
{
Console.WriteLine(" ");
}
printNotes(rt, (rt.isSetSpecies() ? rt.getSpecies() : ""));
}
/* ModifierSpeciesReference (Modifier) */
for (j = 0; j < re.getNumModifiers(); j++)
{
ModifierSpeciesReference md = re.getModifier(j);
if (md.isSetNotes())
{
Console.WriteLine(" ");
}
printNotes(md, (md.isSetSpecies() ? md.getSpecies() : ""));
}
/* Kineticlaw */
if (re.isSetKineticLaw())
{
KineticLaw kl = re.getKineticLaw();
if (kl.isSetNotes())
{
Console.WriteLine(" ");
}
printNotes(kl);
/* Parameter */
for (j = 0; j < kl.getNumParameters(); j++)
{
Parameter pa = kl.getParameter(j);
if (pa.isSetNotes())
{
Console.WriteLine(" ");
}
printNotes(pa);
}
}
}
/* Species */
for (i = 0; i < m.getNumSpecies(); i++)
{
Species sp = m.getSpecies(i);
printNotes(sp);
}
/* Compartment */
for (i = 0; i < m.getNumCompartments(); i++)
{
Compartment sp = m.getCompartment(i);
printNotes(sp);
}
/* FunctionDefinition */
for (i = 0; i < m.getNumFunctionDefinitions(); i++)
{
FunctionDefinition sp = m.getFunctionDefinition(i);
printNotes(sp);
}
/* UnitDefinition */
for (i = 0; i < m.getNumUnitDefinitions(); i++)
{
UnitDefinition sp = m.getUnitDefinition(i);
printNotes(sp);
}
/* Parameter */
for (i = 0; i < m.getNumParameters(); i++)
{
Parameter sp = m.getParameter(i);
printNotes(sp);
}
/* Rule */
for (i = 0; i < m.getNumRules(); i++)
{
Rule sp = m.getRule(i);
printNotes(sp);
}
/* InitialAssignment */
for (i = 0; i < m.getNumInitialAssignments(); i++)
{
InitialAssignment sp = m.getInitialAssignment(i);
printNotes(sp);
}
/* Event */
for (i = 0; i < m.getNumEvents(); i++)
{
Event sp = m.getEvent(i);
printNotes(sp);
/* Trigger */
if (sp.isSetTrigger())
{
Trigger tg = sp.getTrigger();
if (tg.isSetNotes())
{
Console.WriteLine(" ");
}
printNotes(tg);
}
/* Delay */
if (sp.isSetDelay())
{
Delay dl = sp.getDelay();
if (dl.isSetNotes())
{
Console.WriteLine(" ");
}
printNotes(dl);
}
/* EventAssignment */
for (j = 0; j < sp.getNumEventAssignments(); j++)
{
EventAssignment ea = sp.getEventAssignment(j);
if (ea.isSetNotes())
{
Console.WriteLine(" ");
}
printNotes(ea);
}
}
/* SpeciesType */
for (i = 0; i < m.getNumSpeciesTypes(); i++)
{
SpeciesType sp = m.getSpeciesType(i);
printNotes(sp);
}
/* Constraint */
for (i = 0; i < m.getNumConstraints(); i++)
{
Constraint sp = m.getConstraint(i);
printNotes(sp);
}
return(errors);
}
public bool TryGetValue(UnitDefinition unit, out CreatureSpriteCollection collection)
{
return(TryGetValue(unit.race.mat_index, out collection));
}
public virtual void MakeSchemaCompliant()
{
UnitDefinition.MakeSchemaCompliant();
}
abstract public bool GetValue(UnitDefinition unit, out T value);
internal void UpdateLayers(UnitDefinition unit, CreatureRaw creatureRaw, CasteRaw casteRaw)
{
for (int i = 0; i < spriteList.Count; i++)
{
var spriteLayerDef = SpriteCollection.spriteLayers[i];
var sprite = spriteList[i];
switch (spriteLayerDef.spriteSource)
{
case CreatureSpriteLayer.SpriteSource.Static:
sprite.gameObject.SetActive(true);
switch (spriteLayerDef.colorSource)
{
case CreatureSpriteLayer.ColorSource.Fixed:
sprite.color = spriteLayerDef.color;
break;
case CreatureSpriteLayer.ColorSource.Job:
sprite.color = new Color(unit.profession_color.red / 255.0f, unit.profession_color.green / 255.0f, unit.profession_color.blue / 255.0f, 0.5f);
break;
default:
sprite.color = new Color32(128, 128, 128, 128);
break;
}
break;
case CreatureSpriteLayer.SpriteSource.Bodypart:
sprite.gameObject.SetActive(true);
switch (spriteLayerDef.colorSource)
{
case CreatureSpriteLayer.ColorSource.Fixed:
sprite.color = spriteLayerDef.color;
break;
case CreatureSpriteLayer.ColorSource.Material:
ColorDefinition unitColor = new ColorDefinition();
int colorModIndex = casteRaw.color_modifiers.FindIndex(x => x.part == spriteLayerDef.token && x.start_date == 0);
if (colorModIndex >= 0 && unit.appearance != null)
{
unitColor = casteRaw.color_modifiers[colorModIndex].patterns[unit.appearance.colors[colorModIndex]].colors[spriteLayerDef.patternIndex];
sprite.color = new Color32((byte)unitColor.red, (byte)unitColor.green, (byte)unitColor.blue, 128);
}
else
{
int tissueIndex = creatureRaw.tissues.FindIndex(x => x.name == spriteLayerDef.token);
if (tissueIndex >= 0)
{
sprite.color = ContentLoader.GetColor(creatureRaw.tissues[tissueIndex].material);
}
else
{
sprite.gameObject.SetActive(false);
}
break;
}
break;
case CreatureSpriteLayer.ColorSource.Job:
sprite.color = new Color(unit.profession_color.red / 255.0f, unit.profession_color.green / 255.0f, unit.profession_color.blue / 255.0f, 0.5f);
break;
case CreatureSpriteLayer.ColorSource.BodyPart:
var part = casteRaw.body_parts.Find(x => x.token == spriteLayerDef.token);
if (part == null)
{
sprite.gameObject.SetActive(false);
break;
}
sprite.color = ContentLoader.GetColor(creatureRaw.tissues[part.layers[0].tissue_id].material);
break;
default:
sprite.color = new Color32(128, 128, 128, 128);
break;
}
switch (spriteLayerDef.hairType)
{
case CreatureSpriteLayer.HairType.Hair:
if (unit.inventory.FindIndex(x => x.item.type.mat_type == (int)ItemType.Helm) >= 0)
{
sprite.gameObject.SetActive(false);
break;
}
if (unit.appearance == null || unit.appearance.hair == null)
{
sprite.gameObject.SetActive(spriteLayerDef.hairStyle == HairStyle.UNKEMPT);
}
else
{
sprite.gameObject.SetActive((spriteLayerDef.hairStyle == unit.appearance.hair.style) &&
(spriteLayerDef.hairMin <= unit.appearance.hair.length) &&
((spriteLayerDef.hairMax < 0) || (spriteLayerDef.hairMax > unit.appearance.hair.length)));
}
break;
case CreatureSpriteLayer.HairType.Beard:
if (unit.appearance == null || unit.appearance.beard == null)
{
sprite.gameObject.SetActive(spriteLayerDef.hairStyle == HairStyle.UNKEMPT);
}
else
{
sprite.gameObject.SetActive((spriteLayerDef.hairStyle == unit.appearance.beard.style) &&
(spriteLayerDef.hairMin <= unit.appearance.beard.length) &&
((spriteLayerDef.hairMax < 0) || (spriteLayerDef.hairMax > unit.appearance.beard.length)));
}
break;
case CreatureSpriteLayer.HairType.Moustache:
if (unit.appearance == null || unit.appearance.moustache == null)
{
sprite.gameObject.SetActive(spriteLayerDef.hairStyle == HairStyle.UNKEMPT);
}
else
{
sprite.gameObject.SetActive((spriteLayerDef.hairStyle == unit.appearance.moustache.style) &&
(spriteLayerDef.hairMin <= unit.appearance.moustache.length) &&
((spriteLayerDef.hairMax < 0) || (spriteLayerDef.hairMax > unit.appearance.moustache.length)));
}
break;
case CreatureSpriteLayer.HairType.Sideburns:
if (unit.appearance == null || unit.appearance.sideburns == null)
{
sprite.gameObject.SetActive(spriteLayerDef.hairStyle == HairStyle.UNKEMPT);
}
else
{
sprite.gameObject.SetActive((spriteLayerDef.hairStyle == unit.appearance.sideburns.style) &&
(spriteLayerDef.hairMin <= unit.appearance.sideburns.length) &&
((spriteLayerDef.hairMax < 0) || (spriteLayerDef.hairMax > unit.appearance.sideburns.length)));
}
break;
default:
sprite.gameObject.SetActive(true);
break;
}
break;
case CreatureSpriteLayer.SpriteSource.Equipment:
int inventoryIndex = unit.inventory.FindIndex(
x =>
(x.mode == InventoryMode.Weapon || x.mode == InventoryMode.Worn) &&
spriteLayerDef.token == ItemRaws.Instance[x.item.type].id
);
if (inventoryIndex < 0)
{
sprite.gameObject.SetActive(false);
break;
}
else
{
sprite.enabled = true;
}
var item = unit.inventory[inventoryIndex].item;
switch (spriteLayerDef.colorSource)
{
case CreatureSpriteLayer.ColorSource.Fixed:
sprite.color = spriteLayerDef.color;
break;
case CreatureSpriteLayer.ColorSource.Material:
sprite.color = ContentLoader.GetColor(item);
break;
case CreatureSpriteLayer.ColorSource.Job:
sprite.color = new Color(unit.profession_color.red / 255.0f, unit.profession_color.green / 255.0f, unit.profession_color.blue / 255.0f, 0.5f);
break;
default:
sprite.color = new Color32(128, 128, 128, 128);
break;
}
break;
default:
sprite.gameObject.SetActive(false);
break;
}
if (sprite.color.a < 0.5f)
{
sprite.sharedMaterial = SpriteMatTrans;
}
else
{
sprite.sharedMaterial = SpriteMat;
}
}
}
static void testListOfRemove(ListOf lof, SBase s)
{
string ename = s.getElementName();
lof.append(s);
SBase c = lof.get(0);
if (c is CompartmentType)
{
CompartmentType x = (lof as ListOfCompartmentTypes).remove(0); c = x;
}
else if (c is Compartment)
{
Compartment x = (lof as ListOfCompartments).remove(0); c = x;
}
else if (c is Constraint)
{
Constraint x = (lof as ListOfConstraints).remove(0); c = x;
}
else if (c is EventAssignment)
{
EventAssignment x = (lof as ListOfEventAssignments).remove(0); c = x;
}
else if (c is Event)
{
Event x = (lof as ListOfEvents).remove(0); c = x;
}
else if (c is FunctionDefinition)
{
FunctionDefinition x = (lof as ListOfFunctionDefinitions).remove(0); c = x;
}
else if (c is InitialAssignment)
{
InitialAssignment x = (lof as ListOfInitialAssignments).remove(0); c = x;
}
else if (c is Parameter)
{
Parameter x = (lof as ListOfParameters).remove(0); c = x;
}
else if (c is Reaction)
{
Reaction x = (lof as ListOfReactions).remove(0); c = x;
}
else if (c is Rule)
{
Rule x = (lof as ListOfRules).remove(0); c = x;
}
else if (c is Species)
{
Species x = (lof as ListOfSpecies).remove(0); c = x;
}
else if (c is SpeciesReference)
{
SimpleSpeciesReference x = (lof as ListOfSpeciesReferences).remove(0); c = x;
}
else if (c is SpeciesType)
{
SpeciesType x = (lof as ListOfSpeciesTypes).remove(0); c = x;
}
else if (c is UnitDefinition)
{
UnitDefinition x = (lof as ListOfUnitDefinitions).remove(0); c = x;
}
else if (c is Unit)
{
Unit x = (lof as ListOfUnits).remove(0); c = x;
}
else
{
ERR("[testListOfRemove] Error: (" + ename + ") : ListOfXXX::remove() failed.");
return;
}
if (c == null)
{
ERR("[testListOfRemove] Error: (" + ename + ") : ListOfXXX::remove() failed.");
return;
}
string enameGet = c.getElementName();
if (ename == enameGet)
{
//Console.Out.WriteLine("[testListOfRemove] OK: (" + ename + ") remove(" + enameGet + ") : type match.");
OK();
}
else
{
ERR("[testListOfRemove] Error: (" + ename + ") remove(" + enameGet + ") : type mismatch.");
}
}
static void testClone(SBase s)
{
string ename = s.getElementName();
SBase c = s.clone();
if (c is Compartment)
{
Compartment x = (s as Compartment).clone(); c = x;
}
else if (c is CompartmentType)
{
CompartmentType x = (s as CompartmentType).clone(); c = x;
}
else if (c is Constraint)
{
Constraint x = (s as Constraint).clone(); c = x;
}
else if (c is Delay)
{
Delay x = (s as Delay).clone(); c = x;
}
else if (c is Event)
{
Event x = (s as Event).clone(); c = x;
}
else if (c is EventAssignment)
{
EventAssignment x = (s as EventAssignment).clone(); c = x;
}
else if (c is FunctionDefinition)
{
FunctionDefinition x = (s as FunctionDefinition).clone(); c = x;
}
else if (c is InitialAssignment)
{
InitialAssignment x = (s as InitialAssignment).clone(); c = x;
}
else if (c is KineticLaw)
{
KineticLaw x = (s as KineticLaw).clone(); c = x;
}
// currently return type of ListOf::clone() is SBase
else if (c is ListOf)
{
SBase x = (s as ListOf).clone(); c = x;
}
else if (c is Model)
{
Model x = (s as Model).clone(); c = x;
}
else if (c is Parameter)
{
Parameter x = (s as Parameter).clone(); c = x;
}
else if (c is Reaction)
{
Reaction x = (s as Reaction).clone(); c = x;
}
else if (c is AlgebraicRule)
{
AlgebraicRule x = (s as AlgebraicRule).clone(); c = x;
}
else if (c is AssignmentRule)
{
AssignmentRule x = (s as AssignmentRule).clone(); c = x;
}
else if (c is RateRule)
{
RateRule x = (s as RateRule).clone(); c = x;
}
else if (c is SBMLDocument)
{
SBMLDocument x = (s as SBMLDocument).clone(); c = x;
}
else if (c is Species)
{
Species x = (s as Species).clone(); c = x;
}
else if (c is SpeciesReference)
{
SpeciesReference x = (s as SpeciesReference).clone(); c = x;
}
else if (c is SpeciesType)
{
SpeciesType x = (s as SpeciesType).clone(); c = x;
}
else if (c is SpeciesReference)
{
SpeciesReference x = (s as SpeciesReference).clone(); c = x;
}
else if (c is StoichiometryMath)
{
StoichiometryMath x = (s as StoichiometryMath).clone(); c = x;
}
else if (c is Trigger)
{
Trigger x = (s as Trigger).clone(); c = x;
}
else if (c is Unit)
{
Unit x = (s as Unit).clone(); c = x;
}
else if (c is UnitDefinition)
{
UnitDefinition x = (s as UnitDefinition).clone(); c = x;
}
else if (c is ListOfCompartmentTypes)
{
ListOfCompartmentTypes x = (s as ListOfCompartmentTypes).clone(); c = x;
}
else if (c is ListOfCompartments)
{
ListOfCompartments x = (s as ListOfCompartments).clone(); c = x;
}
else if (c is ListOfConstraints)
{
ListOfConstraints x = (s as ListOfConstraints).clone(); c = x;
}
else if (c is ListOfEventAssignments)
{
ListOfEventAssignments x = (s as ListOfEventAssignments).clone(); c = x;
}
else if (c is ListOfEvents)
{
ListOfEvents x = (s as ListOfEvents).clone(); c = x;
}
else if (c is ListOfFunctionDefinitions)
{
ListOfFunctionDefinitions x = (s as ListOfFunctionDefinitions).clone(); c = x;
}
else if (c is ListOfInitialAssignments)
{
ListOfInitialAssignments x = (s as ListOfInitialAssignments).clone(); c = x;
}
else if (c is ListOfParameters)
{
ListOfParameters x = (s as ListOfParameters).clone(); c = x;
}
else if (c is ListOfReactions)
{
ListOfReactions x = (s as ListOfReactions).clone(); c = x;
}
else if (c is ListOfRules)
{
ListOfRules x = (s as ListOfRules).clone(); c = x;
}
else if (c is ListOfSpecies)
{
ListOfSpecies x = (s as ListOfSpecies).clone(); c = x;
}
else if (c is ListOfSpeciesReferences)
{
ListOfSpeciesReferences x = (s as ListOfSpeciesReferences).clone(); c = x;
}
else if (c is ListOfSpeciesTypes)
{
ListOfSpeciesTypes x = (s as ListOfSpeciesTypes).clone(); c = x;
}
else if (c is ListOfUnitDefinitions)
{
ListOfUnitDefinitions x = (s as ListOfUnitDefinitions).clone(); c = x;
}
else if (c is ListOfUnits)
{
ListOfUnits x = (s as ListOfUnits).clone(); c = x;
}
else
{
ERR("[testClone] Error: (" + ename + ") : clone() failed.");
return;
}
if (c == null)
{
ERR("[testClone] Error: (" + ename + ") : clone() failed.");
return;
}
string enameClone = c.getElementName();
if (ename == enameClone)
{
//Console.Out.WriteLine("[testClone] OK: (" + ename + ") clone(" + enameClone + ") : type match.");
OK();
}
else
{
ERR("[testClone] Error: (" + ename + ") clone(" + enameClone + ") : type mismatch.");
}
}
