public static string GetResultsText(DisplaySettings displaySettings, TransitionGroupDocNode nodeGroup)
{
float? libraryProduct = nodeGroup.GetLibraryDotProduct(displaySettings.ResultsIndex);
float? isotopeProduct = nodeGroup.GetIsotopeDotProduct(displaySettings.ResultsIndex);
RatioValue ratio = null;
if (displaySettings.NormalizationMethod is NormalizationMethod.RatioToLabel ratioToLabel)
{
ratio = displaySettings.NormalizedValueCalculator.GetTransitionGroupRatioValue(ratioToLabel,
displaySettings.NodePep, nodeGroup, nodeGroup.GetChromInfoEntry(displaySettings.ResultsIndex));
}
if (null == ratio && !isotopeProduct.HasValue && !libraryProduct.HasValue)
{
return(string.Empty);
}
StringBuilder sb = new StringBuilder(@" (");
int len = sb.Length;
if (isotopeProduct.HasValue)
{
sb.Append(string.Format(@"idotp {0}", isotopeProduct.Value.ToString(DOTP_FORMAT)));
}
if (libraryProduct.HasValue)
{
if (sb.Length > len)
{
sb.Append(CS_SEPARATOR);
}
sb.Append(string.Format(@"dotp {0}", libraryProduct.Value.ToString(DOTP_FORMAT)));
}
if (ratio != null)
{
if (sb.Length > len)
{
sb.Append(CS_SEPARATOR);
}
if (!double.IsNaN(ratio.StdDev))
{
sb.Append(string.Format(@"rdotp {0}", ratio.DotProduct.ToString(DOTP_FORMAT)));
sb.Append(CS_SEPARATOR);
}
sb.Append(string.Format(Resources.TransitionGroupTreeNode_GetResultsText_total_ratio__0__,
MathEx.RoundAboveZero(ratio.Ratio, 2, 4)));
}
sb.Append(@")");
return(sb.ToString());
}
public static string GetResultsText(TransitionGroupDocNode nodeGroup,
PeptideDocNode nodePep, int indexResult, int indexRatio)
{
float? libraryProduct = nodeGroup.GetLibraryDotProduct(indexResult);
float? isotopeProduct = nodeGroup.GetIsotopeDotProduct(indexResult);
RatioValue ratio = nodeGroup.GetPeakAreaRatio(indexResult, indexRatio);
if (null == ratio && !isotopeProduct.HasValue && !libraryProduct.HasValue)
{
return(string.Empty);
}
StringBuilder sb = new StringBuilder(@" (");
int len = sb.Length;
if (isotopeProduct.HasValue)
{
sb.Append(string.Format(@"idotp {0}", isotopeProduct.Value.ToString(DOTP_FORMAT)));
}
if (libraryProduct.HasValue)
{
if (sb.Length > len)
{
sb.Append(CS_SEPARATOR);
}
sb.Append(string.Format(@"dotp {0}", libraryProduct.Value.ToString(DOTP_FORMAT)));
}
if (ratio != null)
{
if (sb.Length > len)
{
sb.Append(CS_SEPARATOR);
}
if (!double.IsNaN(ratio.StdDev))
{
sb.Append(string.Format(@"rdotp {0}", ratio.DotProduct.ToString(DOTP_FORMAT)));
sb.Append(CS_SEPARATOR);
}
sb.Append(string.Format(Resources.TransitionGroupTreeNode_GetResultsText_total_ratio__0__,
MathEx.RoundAboveZero(ratio.Ratio, 2, 4)));
}
sb.Append(@")");
return(sb.ToString());
}
private string GetDotProductResultsText(TransitionGroupDocNode nodeGroup, int indexResult)
{
var replicateIndices = IndexOfReplicate(indexResult);
IEnumerable <float?> values;
switch (ExpectedVisible)
{
case AreaExpectedValue.library:
if (replicateIndices.IsEmpty)
{
values = new[] { nodeGroup.GetLibraryDotProduct(-1) };
}
else
{
values = replicateIndices.Select(nodeGroup.GetLibraryDotProduct);
}
break;
case AreaExpectedValue.isotope_dist:
if (replicateIndices.IsEmpty)
{
values = new[] { nodeGroup.GetIsotopeDotProduct(-1) };
}
else
{
values = replicateIndices.Select(nodeGroup.GetIsotopeDotProduct);
}
break;
default:
return(null);
}
var statistics = new Statistics(values
.Select(value => value.HasValue ? (double?)value : null)
.Where(value => value.HasValue)
.Cast <double>());
if (statistics.Length == 0)
{
return(null);
}
return(GetDotProductText((float)statistics.Mean()));
}
private string GetDotProductResultsText(TransitionGroupDocNode nodeGroup, int indexResult)
{
var replicateIndices = IndexOfReplicate(indexResult);
IEnumerable<float?> values;
switch (ExpectedVisible)
{
case AreaExpectedValue.library:
if (replicateIndices.IsEmpty)
{
values = new[] {nodeGroup.GetLibraryDotProduct(-1)};
}
else
{
values = replicateIndices.Select(nodeGroup.GetLibraryDotProduct);
}
break;
case AreaExpectedValue.isotope_dist:
if (replicateIndices.IsEmpty)
{
values = new[] {nodeGroup.GetIsotopeDotProduct(-1)};
}
else
{
values = replicateIndices.Select(nodeGroup.GetIsotopeDotProduct);
}
break;
default:
return null;
}
var statistics = new Statistics(values
.Select(value => value.HasValue ? (double?) value : null)
.Where(value=>value.HasValue)
.Cast<double>());
if (statistics.Length == 0)
{
return null;
}
return GetDotProductText((float) statistics.Mean());
}
public static string GetResultsText(TransitionGroupDocNode nodeGroup,
PeptideDocNode nodePep, int indexResult, int indexRatio)
{
float? libraryProduct = nodeGroup.GetLibraryDotProduct(indexResult);
float? isotopeProduct = nodeGroup.GetIsotopeDotProduct(indexResult);
RatioValue ratio = nodeGroup.GetPeakAreaRatio(indexResult, indexRatio);
if (null == ratio && !isotopeProduct.HasValue && !libraryProduct.HasValue)
return string.Empty;
StringBuilder sb = new StringBuilder(" ("); // Not L10N
int len = sb.Length;
if (isotopeProduct.HasValue)
sb.Append(string.Format("idotp {0}", isotopeProduct.Value.ToString(DOTP_FORMAT))); // Not L10N
if (libraryProduct.HasValue)
{
if (sb.Length > len)
sb.Append(CS_SEPARATOR);
sb.Append(string.Format("dotp {0}", libraryProduct.Value.ToString(DOTP_FORMAT))); // Not L10N
}
if (ratio != null)
{
if (sb.Length > len)
sb.Append(CS_SEPARATOR);
if (!double.IsNaN(ratio.StdDev))
{
sb.Append(string.Format("rdotp {0}", ratio.DotProduct.ToString(DOTP_FORMAT))); // Not L10N
sb.Append(CS_SEPARATOR);
}
sb.Append(string.Format(Resources.TransitionGroupTreeNode_GetResultsText_total_ratio__0__,
MathEx.RoundAboveZero(ratio.Ratio, 2, 4)));
}
sb.Append(")"); // Not L10N
return sb.ToString();
}