private static void VerifyAdd(int numStaticMods, int numHeavyMods)
{
var calc = SkylineWindow.Document.Settings.PeptideSettings.Prediction.RetentionTime.Calculator as RCalcIrt;
Assert.IsNotNull(calc);
var standards = calc.GetStandardPeptides().Select(SequenceMassCalc.NormalizeModifiedSequence).ToArray();
var peptides = SkylineWindow.Document.PeptideGroups.First().Peptides.ToArray();
Assert.AreEqual(standards.Length, peptides.Length);
foreach (var peptide in peptides)
{
Assert.IsTrue(standards.Contains(peptide.ModifiedTarget));
foreach (var transitionGroup in peptide.TransitionGroups)
{
var transitions = transitionGroup.Transitions.ToList();
for (var i = 1; i < transitions.Count; i++)
{
Assert.IsTrue(TransitionGroup.CompareTransitions(transitions[i - 1], transitions[i]) < 0);
}
}
}
var mods = SkylineWindow.Document.Settings.PeptideSettings.Modifications;
Assert.AreEqual(numStaticMods, mods.StaticModifications.Count);
Assert.AreEqual(numHeavyMods, mods.AllHeavyModifications.Count());
}
