public CalculatedPeaks AutoSizePeak(TracerFormula tracerFormula, AdjustPeaksMode adjustPeaksMode)
{
if (tracerFormula.Equals(BasePeakKey))
{
return(this);
}
var result = new CalculatedPeaks(PeptideFileAnalysis)
{
AutoFindPeak = false,
};
var oldBasePeak = _peaks[BasePeakKey];
result.MakeBasePeak(BasePeakKey, oldBasePeak.StartTime, oldBasePeak.EndTime);
foreach (var entry in _peaks)
{
if (entry.Key.Equals(BasePeakKey))
{
continue;
}
Peak?newPeak = null;
if (entry.Key.Equals(tracerFormula))
{
double width = oldBasePeak.EndTime - oldBasePeak.StartTime;
if (adjustPeaksMode == AdjustPeaksMode.Full)
{
newPeak = result.FindMatchingPeak(tracerFormula);
}
else if (adjustPeaksMode == AdjustPeaksMode.Overlapping)
{
newPeak = result.FindMatchingPeak(tracerFormula, entry.Value.StartTime - width, entry.Value.EndTime + width);
}
else if (adjustPeaksMode == AdjustPeaksMode.Narrow)
{
newPeak = result.FindMatchingPeak(tracerFormula,
Math.Min(entry.Value.StartTime, entry.Value.EndTime - width),
Math.Max(entry.Value.EndTime, entry.Value.StartTime + width));
}
}
if (newPeak == null)
{
result.MakeSecondaryPeak(entry.Key, entry.Value.StartTime, entry.Value.EndTime);
}
}
result.FinishCalculation();
return(result);
}
public CalculatedPeaks ChangeTime(TracerFormula tracerFormula, double newStartTime, double newEndTime)
{
CalculatedPeaks result = new CalculatedPeaks(PeptideFileAnalysis)
{
AutoFindPeak = false,
};
Peak oldBasePeak = _peaks[BasePeakKey];
bool isBasePeak;
if (tracerFormula.Equals(BasePeakKey))
{
result.MakeBasePeak(BasePeakKey, newStartTime, newEndTime);
isBasePeak = true;
}
else
{
result.MakeBasePeak(BasePeakKey, oldBasePeak.StartTime,
oldBasePeak.EndTime);
isBasePeak = false;
}
foreach (var entry in _peaks)
{
if (entry.Key.Equals(tracerFormula))
{
if (isBasePeak)
{
continue;
}
result.MakeSecondaryPeak(tracerFormula, newStartTime, newEndTime);
}
else
{
result.MakeSecondaryPeak(entry.Key, entry.Value.StartTime, entry.Value.EndTime);
}
}
result.FinishCalculation();
return(result);
}
public CalculatedPeaks ChangeTime(TracerFormula tracerFormula, double newStartTime, double newEndTime)
{
CalculatedPeaks result = new CalculatedPeaks(PeptideFileAnalysis)
{
AutoFindPeak = false,
};
Peak oldBasePeak = _peaks[BasePeakKey];
bool isBasePeak;
if (tracerFormula.Equals(BasePeakKey))
{
result.MakeBasePeak(BasePeakKey, newStartTime, newEndTime);
isBasePeak = true;
}
else
{
result.MakeBasePeak(BasePeakKey, oldBasePeak.StartTime,
oldBasePeak.EndTime);
isBasePeak = false;
}
foreach (var entry in _peaks)
{
if (entry.Key.Equals(tracerFormula))
{
if (isBasePeak)
{
continue;
}
result.MakeSecondaryPeak(tracerFormula, newStartTime, newEndTime);
}
else
{
result.MakeSecondaryPeak(entry.Key, entry.Value.StartTime, entry.Value.EndTime);
}
}
result.FinishCalculation();
return result;
}
public CalculatedPeaks AutoSizePeak(TracerFormula tracerFormula, AdjustPeaksMode adjustPeaksMode)
{
if (tracerFormula.Equals(BasePeakKey))
{
return this;
}
var result = new CalculatedPeaks(PeptideFileAnalysis)
{
AutoFindPeak = false,
};
var oldBasePeak = _peaks[BasePeakKey];
result.MakeBasePeak(BasePeakKey, oldBasePeak.StartTime, oldBasePeak.EndTime);
foreach (var entry in _peaks)
{
if (entry.Key.Equals(BasePeakKey))
{
continue;
}
Peak? newPeak = null;
if (entry.Key.Equals(tracerFormula))
{
double width = oldBasePeak.EndTime - oldBasePeak.StartTime;
if (adjustPeaksMode == AdjustPeaksMode.Full)
{
newPeak = result.FindMatchingPeak(tracerFormula);
}
else if (adjustPeaksMode == AdjustPeaksMode.Overlapping)
{
newPeak = result.FindMatchingPeak(tracerFormula, entry.Value.StartTime - width, entry.Value.EndTime + width);
}
else if (adjustPeaksMode == AdjustPeaksMode.Narrow)
{
newPeak = result.FindMatchingPeak(tracerFormula,
Math.Min(entry.Value.StartTime, entry.Value.EndTime - width),
Math.Max(entry.Value.EndTime, entry.Value.StartTime + width));
}
}
if (newPeak == null)
{
result.MakeSecondaryPeak(entry.Key, entry.Value.StartTime, entry.Value.EndTime);
}
}
result.FinishCalculation();
return result;
}
private bool IsDisplayed(TracerFormula tracerFormula)
{
if (dataGridView1.SelectedRows.Count == 0)
{
return true;
}
for (int i = 0; i < dataGridView1.Rows.Count; i++)
{
var row = dataGridView1.Rows[i];
if (row.Selected && tracerFormula.Equals(row.Tag))
{
return true;
}
}
return false;
}
