public void testLookupOutputs()
{
TnmSchemaLookup lookup = new TnmSchemaLookup("C680", "8590");
List <StagingSchema> lookups = _STAGING.lookupSchema(lookup);
Assert.AreEqual(1, lookups.Count);
StagingSchema schema = _STAGING.getSchema(lookups[0].getId());
Assert.AreEqual("urethra", schema.getId());
// build list of output keys
List <StagingSchemaOutput> outputs = schema.getOutputs();
HashSet <String> definedOutputs = new HashSet <String>();
foreach (StagingSchemaOutput o in outputs)
{
definedOutputs.Add(o.getKey());
}
// test without context
Assert.IsTrue(definedOutputs.SetEquals(_STAGING.getOutputs(schema)));
// test with context
Assert.IsTrue(definedOutputs.SetEquals(_STAGING.getOutputs(schema, lookup.getInputs())));
}
public void testDescriminator()
{
TnmSchemaLookup lookup = new TnmSchemaLookup("C629", "9100");
Assert.IsFalse(lookup.hasDiscriminator());
lookup.setInput(TnmStagingData.SSF25_KEY, "");
Assert.IsFalse(lookup.hasDiscriminator());
lookup.setInput(TnmStagingData.SSF25_KEY, "001");
Assert.IsTrue(lookup.hasDiscriminator());
}
public void testLookupInputs()
{
// test valid combinations that do not require a discriminator
StagingSchema schema = _STAGING.getSchema("prostate");
TnmSchemaLookup lookup = new TnmSchemaLookup("C619", "8000");
Assert.IsTrue(_STAGING.getInputs(schema, lookup.getInputs()).Contains("clin_t"));
lookup = new TnmSchemaLookup("C619", "8120");
Assert.IsFalse(_STAGING.getInputs(schema, lookup.getInputs()).Contains("clin_t"));
}
public void testSchemaSelection()
{
// test bad values
List <StagingSchema> lookup = _STAGING.lookupSchema(new SchemaLookup());
Assert.AreEqual(0, lookup.Count);
lookup = _STAGING.lookupSchema(new TnmSchemaLookup("XXX", "YYY"));
Assert.AreEqual(0, lookup.Count);
// test valid combinations that do not require a discriminator
TnmSchemaLookup schemaLookup = new TnmSchemaLookup("C629", "9231");
schemaLookup.setInput(TnmStagingData.SSF25_KEY, "");
lookup = _STAGING.lookupSchema(schemaLookup);
Assert.AreEqual(1, lookup.Count);
Assert.AreEqual("testis", lookup[0].getId());
schemaLookup.setInput(TnmStagingData.SSF25_KEY, null);
lookup = _STAGING.lookupSchema(schemaLookup);
Assert.AreEqual(1, lookup.Count);
Assert.AreEqual("testis", lookup[0].getId());
// now test one that does do AJCC7
lookup = _STAGING.lookupSchema(new TnmSchemaLookup("C629", "9231"));
Assert.AreEqual(1, lookup.Count);
// test value combinations that do not require a discriminator and are supplied 988
schemaLookup = new TnmSchemaLookup("C629", "9231");
schemaLookup.setInput(TnmStagingData.SSF25_KEY, "988");
lookup = _STAGING.lookupSchema(schemaLookup);
Assert.AreEqual(1, lookup.Count);
Assert.AreEqual("testis", lookup[0].getId());
// test valid combination that requires a discriminator but is not supplied one
lookup = _STAGING.lookupSchema(new TnmSchemaLookup("C111", "8200"));
Assert.AreEqual(2, lookup.Count);
HashSet <String> hash1 = null;
HashSet <String> hash2 = null;
foreach (StagingSchema schema in lookup)
{
hash1 = new HashSet <String>()
{
"ssf25"
};
hash2 = schema.getSchemaDiscriminators();
Assert.IsTrue(hash1.SetEquals(hash2));
}
// test valid combination that requires discriminator and a good discriminator is supplied
schemaLookup = new TnmSchemaLookup("C111", "8200");
schemaLookup.setInput(TnmStagingData.SSF25_KEY, "010");
lookup = _STAGING.lookupSchema(schemaLookup);
Assert.AreEqual(1, lookup.Count);
foreach (StagingSchema schema in lookup)
{
hash1 = new HashSet <String>()
{
"ssf25"
};
hash2 = schema.getSchemaDiscriminators();
Assert.IsTrue(hash1.SetEquals(hash2));
}
Assert.AreEqual("nasopharynx", lookup[0].getId());
// test valid combination that requires a discriminator but is supplied a bad disciminator value
schemaLookup = new TnmSchemaLookup("C111", "8200");
schemaLookup.setInput(TnmStagingData.SSF25_KEY, "999");
lookup = _STAGING.lookupSchema(schemaLookup);
Assert.AreEqual(0, lookup.Count);
// test searching on only site
lookup = _STAGING.lookupSchema(new TnmSchemaLookup("C401", null));
Assert.AreEqual(5, lookup.Count);
// test searching on only hist
lookup = _STAGING.lookupSchema(new TnmSchemaLookup(null, "9702"));
Assert.AreEqual(2, lookup.Count);
// test that searching on only ssf25 returns no results
schemaLookup = new TnmSchemaLookup(null, null);
schemaLookup.setInput(TnmStagingData.SSF25_KEY, "001");
lookup = _STAGING.lookupSchema(schemaLookup);
Assert.AreEqual(0, lookup.Count);
schemaLookup = new TnmSchemaLookup("", null);
schemaLookup.setInput(TnmStagingData.SSF25_KEY, "001");
lookup = _STAGING.lookupSchema(schemaLookup);
Assert.AreEqual(0, lookup.Count);
schemaLookup = new TnmSchemaLookup(null, "");
schemaLookup.setInput(TnmStagingData.SSF25_KEY, "001");
lookup = _STAGING.lookupSchema(schemaLookup);
Assert.AreEqual(0, lookup.Count);
}
public void testBadKey()
{
TnmSchemaLookup lookup = new TnmSchemaLookup("C509", "8000");
lookup.setInput("bad_key", "111");
}
