public void TestWrite()
{
TextFileDefinition def = new TextFileDefinition();
def.Delimiter = '\t';
def.Description = "Test File ...";
def.Add(new FileDefinitionItem()
{
AnnotationName = "AnnoKey1",
PropertyName = "PropName1",
ValueType = "double",
Format = "{0:0.0000}"
});
def.Add(new FileDefinitionItem()
{
AnnotationName = "AnnoKey2",
PropertyName = "PropName2",
ValueType = "int"
});
def.Add(new FileDefinitionItem()
{
AnnotationName = "AnnoKey3",
PropertyName = "PropName3",
ValueType = "string"
});
var newfile = @"../../../data/TextFileDefinition2.xml";
def.WriteToFile(newfile);
AssertUtils.AssertFileEqual(DefinitionFile, newfile);
File.Delete(newfile);
}
private void btnSave_Click(object sender, EventArgs e)
{
FormToDefinition();
if (!dlgSaveFormatFile.FileName.Equals(lastFile))
{
if (File.Exists(lastFile) && !File.Exists(dlgSaveFormatFile.FileName))
{
dlgSaveFormatFile.FileName = lastFile;
}
else
{
dlgSaveFormatFile.FileName = Path.Combine(lastDirectory, Path.GetFileName(lastDirectory) + ".siformat");
dlgSaveFormatFile.InitialDirectory = lastDirectory;
}
}
if (dlgSaveFormatFile.ShowDialog() == System.Windows.Forms.DialogResult.OK)
{
var map = headers.ToDictionary(m => m.PropertyName);
items.ForEach(m =>
{
if (!string.IsNullOrEmpty(m.PropertyName))
{
var item = map[m.PropertyName];
m.ValueType = item.ValueType;
m.Required = item.Required;
m.Format = item.Format;
}
});
items.WriteToFile(dlgSaveFormatFile.FileName);
}
}
private void btnSave_Click(object sender, EventArgs e)
{
for (int i = 0; i < items.Count; i++)
{
if (!string.IsNullOrEmpty(items[i].PropertyName))
{
if (!propertyNames.Contains(items[i].PropertyName))
{
MessageBox.Show("Property " + items[i].PropertyName + " is illegal!");
return;
}
for (int j = i + 1; j < items.Count; j++)
{
if (items[i].PropertyName.Equals(items[j].PropertyName))
{
MessageBox.Show("Property " + items[i].PropertyName + " are multi-defined!");
return;
}
}
}
}
dlgSaveFormatFile.InitialDirectory = FileUtils.GetTemplateDir().FullName;
if (File.Exists(lastFile) && !File.Exists(dlgSaveFormatFile.FileName))
{
dlgSaveFormatFile.FileName = lastFile;
}
if (dlgSaveFormatFile.ShowDialog() == System.Windows.Forms.DialogResult.OK)
{
var map = headers.ToDictionary(m => m.PropertyName);
items.ForEach(m =>
{
if (!string.IsNullOrEmpty(m.PropertyName))
{
var item = map[m.PropertyName];
m.ValueType = item.ValueType;
m.Required = item.Required;
m.Format = item.Format;
}
});
items.DelimiterString = txtDelimiter.Text;
items.Description = txtDescription.Text;
items.WriteToFile(dlgSaveFormatFile.FileName);
SrmFormatFactory.Refresh();
}
}
private void DoSaveToFile(string filename)
{
FormToDefinition();
var map = headers.ToDictionary(m => m.PropertyName);
items.ForEach(m =>
{
if (!string.IsNullOrEmpty(m.PropertyName))
{
var item = map[m.PropertyName];
m.ValueType = item.ValueType;
m.Required = item.Required;
m.Format = item.Format;
}
});
items.WriteToFile(filename);
}
public void NewFromData(string subdir)
{
var siformat = Directory.GetFiles(subdir, "*.siformat");
TextFileDefinition prefile = new TextFileDefinition();
if (siformat.Length > 0)
{
prefile.ReadFromFile(siformat[0]);
bool bFound = false;
prefile.ForEach(m =>
{
if (m.PropertyName.Equals("TumorStage"))
{
m.PropertyName = "TumorStatus";
bFound = true;
}
if (m.PropertyName.Equals("Metastasis"))
{
m.PropertyName = "MetastasisStatus";
bFound = true;
}
});
if (bFound)
{
prefile.WriteToFile(siformat[0]);
}
}
var map = new RawSampleInfoReader().ReadDescriptionFromDirectory(subdir);
lastDirectory = subdir;
lastFile = String.Empty;
var files = new HashSet<string>(from f in CelFile.GetCelFiles(subdir, false)
select GeoUtils.GetGsmName(f));
Dictionary<string, HashSet<string>> headers = new Dictionary<string, HashSet<string>>();
foreach (var m in map)
{
var gsm = m.Key.ToLower();
if (!files.Contains(gsm))
{
continue;
}
var curmap = m.Value;
foreach (var entry in curmap)
{
if (!headers.ContainsKey(entry.Key))
{
headers[entry.Key] = new HashSet<string>();
}
headers[entry.Key].UnionWith(entry.Value);
}
}
ClearDataSource();
items.Clear();
foreach (var part in headers)
{
items.Add(new FileDefinitionItem()
{
AnnotationName = part.Key,
Example = (from v in part.Value
orderby v
select v).Merge(";")
});
}
foreach (var olditem in prefile)
{
if (!string.IsNullOrEmpty(olditem.PropertyName))
{
var newitem = items.Find(m => m.AnnotationName.Equals(olditem.AnnotationName));
if (newitem != null)
{
newitem.PropertyName = olditem.PropertyName;
}
}
}
items.DefaultValues.Clear();
foreach (var olddv in prefile.DefaultValues)
{
if (propertyNames.Contains(olddv.PropertyName))
{
items.DefaultValues.Add(new DefaultValue()
{
PropertyName = olddv.PropertyName,
Value = olddv.Value
});
}
}
items.Sort((m1, m2) => m1.AnnotationName.CompareTo(m2.AnnotationName));
UpdateDataSource();
this.Text = title + " - " + Path.GetFileName(subdir);
}
public void NewFromData(string subdir)
{
var siformat = Directory.GetFiles(subdir, "*.siformat");
TextFileDefinition prefile = new TextFileDefinition();
if (siformat.Length > 0)
{
prefile.ReadFromFile(siformat[0]);
bool bFound = false;
prefile.ForEach(m =>
{
if (m.PropertyName.Equals("TumorStage"))
{
m.PropertyName = "TumorStatus";
bFound = true;
}
if (m.PropertyName.Equals("Metastasis"))
{
m.PropertyName = "MetastasisStatus";
bFound = true;
}
});
if (bFound)
{
prefile.WriteToFile(siformat[0]);
}
}
var map = new RawSampleInfoReader().ReadDescriptionFromDirectory(subdir);
lastDirectory = subdir;
lastFile = String.Empty;
var files = new HashSet <string>(from f in CelFile.GetCelFiles(subdir, false)
select GeoUtils.GetGsmName(f));
Dictionary <string, HashSet <string> > headers = new Dictionary <string, HashSet <string> >();
foreach (var m in map)
{
var gsm = m.Key.ToLower();
if (!files.Contains(gsm))
{
continue;
}
var curmap = m.Value;
foreach (var entry in curmap)
{
if (!headers.ContainsKey(entry.Key))
{
headers[entry.Key] = new HashSet <string>();
}
headers[entry.Key].UnionWith(entry.Value);
}
}
ClearDataSource();
items.Clear();
foreach (var part in headers)
{
items.Add(new FileDefinitionItem()
{
AnnotationName = part.Key,
Example = (from v in part.Value
orderby v
select v).Merge(";")
});
}
foreach (var olditem in prefile)
{
if (!string.IsNullOrEmpty(olditem.PropertyName))
{
var newitem = items.Find(m => m.AnnotationName.Equals(olditem.AnnotationName));
if (newitem != null)
{
newitem.PropertyName = olditem.PropertyName;
}
}
}
items.DefaultValues.Clear();
foreach (var olddv in prefile.DefaultValues)
{
if (propertyNames.Contains(olddv.PropertyName))
{
items.DefaultValues.Add(new DefaultValue()
{
PropertyName = olddv.PropertyName,
Value = olddv.Value
});
}
}
items.Sort((m1, m2) => m1.AnnotationName.CompareTo(m2.AnnotationName));
UpdateDataSource();
this.Text = title + " - " + Path.GetFileName(subdir);
}