public void OrganonStandGrowthApi()
{
TestStand.WriteTreeHeader(this.TestContext !);
foreach (OrganonVariant variant in TestConstant.Variants)
{
OrganonConfiguration configuration = OrganonTest.CreateOrganonConfiguration(variant);
// check crown competition API
TestStand stand = OrganonTest.CreateDefaultStand(configuration);
float crownCompetitionFactor = OrganonStandDensity.GetCrownCompetitionByHeight(variant, stand)[0];
Assert.IsTrue(crownCompetitionFactor >= 0.0F);
Assert.IsTrue(crownCompetitionFactor <= TestConstant.Maximum.CrownCompetitionFactor);
OrganonTest.Verify(ExpectedTreeChanges.NoDiameterOrHeightGrowth | ExpectedTreeChanges.NoDiameterOrHeightGrowth, stand, variant);
// recalculate heights and crown ratios for all trees
Dictionary <FiaCode, SpeciesCalibration> calibrationBySpecies = configuration.CreateSpeciesCalibration();
foreach (Trees treesOfSpecies in stand.TreesBySpecies.Values)
{
OrganonGrowth.SetIngrowthHeightAndCrownRatio(variant, stand, treesOfSpecies, treesOfSpecies.Count, calibrationBySpecies);
}
OrganonTest.Verify(ExpectedTreeChanges.NoDiameterOrHeightGrowth | ExpectedTreeChanges.NoDiameterOrHeightGrowth, stand, variant);
// run Organon growth simulation
stand = OrganonTest.CreateDefaultStand(configuration);
if (configuration.IsEvenAge)
{
// stand error if less than one year to grow to breast height
stand.AgeInYears = stand.BreastHeightAgeInYears + 2;
}
stand.SetQuantiles();
stand.WriteTreesAsCsv(this.TestContext !, variant, 0, false);
TestStand initialStand = new TestStand(stand);
TreeLifeAndDeath treeGrowth = new TreeLifeAndDeath();
for (int simulationStep = 0; simulationStep < TestConstant.Default.SimulationCyclesToRun; ++simulationStep)
{
OrganonGrowth.Grow(simulationStep, configuration, stand, calibrationBySpecies);
treeGrowth.AccumulateGrowthAndMortality(stand);
OrganonTest.Verify(ExpectedTreeChanges.DiameterGrowth | ExpectedTreeChanges.HeightGrowth, OrganonWarnings.LessThan50TreeRecords, stand, variant);
stand.WriteTreesAsCsv(this.TestContext !, variant, variant.GetEndYear(simulationStep), false);
}
OrganonTest.Verify(ExpectedTreeChanges.DiameterGrowth | ExpectedTreeChanges.HeightGrowth, treeGrowth, initialStand, stand);
OrganonTest.Verify(calibrationBySpecies);
}
}
public TestStand ToStand(OrganonConfiguration configuration, float siteIndex)
{
int firstPlotMeasurementYear = this.GetFirstMeasurementYear();
// populate Organon version of stand
// Currently, PSP stands are assumed to have IsEvenAge = false, which causes Organon to require a stand age of
// zero years be passed.
TestStand stand = new TestStand(configuration.Variant, 0, siteIndex)
{
NumberOfPlots = this.plotCount
};
foreach (KeyValuePair <FiaCode, int> speciesCount in this.CountTreesBySpecies())
{
// skip any unsupported species as they should be remapped in following loops
if (configuration.Variant.IsSpeciesSupported(speciesCount.Key) == false)
{
continue;
}
// metric PSP data is converted to English units for Organon below
stand.TreesBySpecies.Add(speciesCount.Key, new Trees(speciesCount.Key, speciesCount.Value, Units.English));
}
float fixedPlotExpansionFactor = this.GetTreesPerAcreExpansionFactor();
foreach (PspTreeMeasurementSeries tree in this.MeasurementsByTag.Values)
{
int firstTreeMeasurementYear = tree.GetFirstMeasurementYear();
Debug.Assert(firstTreeMeasurementYear >= firstPlotMeasurementYear);
if (firstTreeMeasurementYear != firstPlotMeasurementYear)
{
// tree is ingrowth
List <PspTreeMeasurementSeries> ingrowthForYear = this.IngrowthByYear.GetOrAdd(firstTreeMeasurementYear);
ingrowthForYear.Add(tree);
continue;
}
FiaCode species = PspStand.MaybeRemapToSupportedSpecies(tree.Species, configuration.Variant);
Trees treesOfSpecies = stand.TreesBySpecies[species];
Debug.Assert(treesOfSpecies.Capacity > treesOfSpecies.Count);
float dbhInInches = TestConstant.InchesPerCm * tree.DbhInCentimetersByYear[firstPlotMeasurementYear];
float heightInFeet = TreeRecord.EstimateHeightInFeet(species, dbhInInches);
treesOfSpecies.Add(tree.Tag, dbhInInches, heightInFeet, TestConstant.Default.CrownRatio, fixedPlotExpansionFactor);
}
// estimate crown ratios
OrganonStandDensity standDensity = new OrganonStandDensity(stand, configuration.Variant);
Dictionary <FiaCode, int> indexBySpecies = new Dictionary <FiaCode, int>();
foreach (PspTreeMeasurementSeries tree in this.MeasurementsByTag.Values)
{
int firstTreeMeasurementYear = tree.GetFirstMeasurementYear();
if (firstTreeMeasurementYear != firstPlotMeasurementYear)
{
continue;
}
if (indexBySpecies.TryGetValue(tree.Species, out int treeIndex) == false)
{
treeIndex = 0;
indexBySpecies.Add(tree.Species, treeIndex);
}
FiaCode species = PspStand.MaybeRemapToSupportedSpecies(tree.Species, configuration.Variant);
Trees treesOfSpecies = stand.TreesBySpecies[species];
treesOfSpecies.CrownRatio[treeIndex] = tree.EstimateInitialCrownRatio(standDensity);
indexBySpecies[tree.Species] = ++treeIndex;
}
// complete stand initialization
stand.EnsureSiteIndicesSet(configuration.Variant);
stand.SetQuantiles();
stand.SetRedAlderSiteIndexAndGrowthEffectiveAge();
stand.SetSdiMax(configuration);
return(stand);
}
