/// <summary>
/// A method that obtains red list information.
/// </summary>
/// <param name="userContext">User context.</param>
private void LoadRedListInformation(IUserContext userContext)
{
ISpeciesFactSearchCriteria searchCriteria;
SpeciesFactList speciesFacts;
if (_organismGroupName.IsNull())
{
_organismGroupName = String.Empty;
_redlistCategoryName = String.Empty;
_redlistCategoryShortString = String.Empty;
_redlistCriteria = String.Empty;
searchCriteria = new SpeciesFactSearchCriteria();
searchCriteria.Add(CoreData.FactorManager.GetFactor(userContext, FactorId.RedlistCategory));
searchCriteria.Add(CoreData.FactorManager.GetFactor(userContext, FactorId.RedlistCriteriaString));
searchCriteria.Add(CoreData.FactorManager.GetFactor(userContext, FactorId.Redlist_OrganismLabel1));
searchCriteria.Add(_period);
searchCriteria.AddTaxon(_taxon);
searchCriteria.IncludeNotValidHosts = true;
searchCriteria.IncludeNotValidTaxa = true;
speciesFacts = CoreData.SpeciesFactManager.GetSpeciesFacts(userContext, searchCriteria);
if (speciesFacts.IsNotEmpty())
{
foreach (ISpeciesFact speciesFact in speciesFacts)
{
switch (speciesFact.Factor.Id)
{
case (Int32)FactorId.RedlistCategory:
if (speciesFact.HasField1)
{
_redlistCategoryName = speciesFact.Field1.EnumValue.OriginalLabel;
_redlistCategoryName = _redlistCategoryName.Remove(_redlistCategoryName.Length - 5);
}
if (speciesFact.HasField4)
{
_redlistCategoryShortString = speciesFact.Field4.StringValue;
}
break;
case (Int32)FactorId.RedlistCriteriaString:
if (speciesFact.HasField4 &&
speciesFact.Field4.StringValue.IsNotEmpty())
{
_redlistCriteria = speciesFact.Field4.StringValue.Trim();
}
break;
case (Int32)FactorId.Redlist_OrganismLabel1:
if (speciesFact.MainField.HasValue)
{
_organismGroupName = speciesFact.MainField.EnumValue.OriginalLabel;
}
break;
}
}
}
}
}
/// <summary>
/// The get species facts.
/// </summary>
/// <param name="userContext">
/// The user context.
/// </param>
/// <param name="taxa">
/// The taxa.
/// </param>
/// <param name="factorIds">
/// The factor ids.
/// </param>
/// <param name="speciesFactList">
/// The species fact list.
/// </param>
/// <returns>
/// The <see cref="Dictionary"/>.
/// </returns>
public static Dictionary <int, Dictionary <FactorId, SpeciesFact> > GetSpeciesFacts(
IUserContext userContext,
IEnumerable <ITaxon> taxa,
IEnumerable <FactorId> factorIds,
out SpeciesFactList speciesFactList)
{
var intFactorIds = new List <int>(factorIds.Select(factorId => (int)factorId));
FactorList factors = CoreData.FactorManager.GetFactors(userContext, intFactorIds);
ISpeciesFactSearchCriteria speciesFactSearchCriteria = new SpeciesFactSearchCriteria();
IPeriod period = CoreData.FactorManager.GetCurrentPublicPeriod(userContext);
speciesFactSearchCriteria.EnsureNoListsAreNull();
speciesFactSearchCriteria.IncludeNotValidHosts = true;
speciesFactSearchCriteria.IncludeNotValidTaxa = true;
speciesFactSearchCriteria.Add(period);
speciesFactSearchCriteria.Add(CoreData.FactorManager.GetDefaultIndividualCategory(userContext));
speciesFactSearchCriteria.Taxa = new TaxonList();
foreach (ITaxon taxon in taxa)
{
speciesFactSearchCriteria.Taxa.Add(taxon);
}
speciesFactSearchCriteria.Factors = new FactorList();
foreach (IFactor factor in factors)
{
speciesFactSearchCriteria.Factors.Add(factor);
}
speciesFactList = CoreData.SpeciesFactManager.GetSpeciesFacts(userContext, speciesFactSearchCriteria);
//speciesFactList = CoreData.SpeciesFactManager.GetDyntaxaSpeciesFacts(userContext, speciesFactSearchCriteria);
var dic = new Dictionary <int, Dictionary <FactorId, SpeciesFact> >();
foreach (SpeciesFact speciesFact in speciesFactList)
{
var factorId = (FactorId)speciesFact.Factor.Id;
if (!dic.ContainsKey(speciesFact.Taxon.Id))
{
dic.Add(speciesFact.Taxon.Id, new Dictionary <FactorId, SpeciesFact>());
}
if (!dic[speciesFact.Taxon.Id].ContainsKey(factorId))
{
dic[speciesFact.Taxon.Id].Add(factorId, speciesFact);
}
}
return(dic);
}
public void Merge()
{
Int32 count;
ISpeciesFactSearchCriteria searchCriteria;
SpeciesFactList speciesFacts;
// Get species fact list with species facts.
searchCriteria = new SpeciesFactSearchCriteria();
searchCriteria.IncludeNotValidHosts = true;
searchCriteria.IncludeNotValidTaxa = true;
searchCriteria.Add(CoreData.FactorManager.GetFactor(GetUserContext(), FactorId.ActionPlan));
speciesFacts = CoreData.SpeciesFactManager.GetSpeciesFacts(GetUserContext(), searchCriteria);
Assert.IsTrue(speciesFacts.IsNotEmpty());
// Merge species fact that already are in the list.
count = speciesFacts.Count;
speciesFacts.Merge(GetUserContext(),
speciesFacts[0].Taxon,
speciesFacts[0].IndividualCategory,
speciesFacts[0].Factor,
speciesFacts[0].Host,
speciesFacts[0].Period);
Assert.AreEqual(count, speciesFacts.Count);
// Merge species fact that is not in the list.
count = speciesFacts.Count;
speciesFacts.Merge(GetUserContext(),
speciesFacts[0].Taxon,
speciesFacts[0].IndividualCategory,
CoreData.FactorManager.GetFactor(GetUserContext(), FactorId.SwedishHistory),
speciesFacts[0].Host,
speciesFacts[0].Period);
Assert.AreEqual(count, speciesFacts.Count - 1);
}
public void GetSpeciesFactsBySearchCriteriaForestAgency()
{
SpeciesFactList speciesFacts;
ISpeciesFactSearchCriteria searchCriteria;
String text;
// This test currently only works in production.
searchCriteria = new SpeciesFactSearchCriteria();
searchCriteria.Add(CoreData.FactorManager.GetFactor(GetUserContext(), 2682)); // Ekologi
searchCriteria.Add(CoreData.FactorManager.GetFactor(GetUserContext(), 2683)); // Naturvård
searchCriteria.Add(CoreData.FactorManager.GetFactor(GetUserContext(), 2684)); // Trädslag
searchCriteria.Add(CoreData.FactorManager.GetDefaultIndividualCategory(GetUserContext()));
searchCriteria.AddTaxon(CoreData.TaxonManager.GetTaxon(GetUserContext(), 256840));
speciesFacts = CoreData.SpeciesFactManager.GetSpeciesFacts(GetUserContext(), searchCriteria);
RemoveSpeciesFactsWithBadQuality(speciesFacts);
Assert.IsTrue(speciesFacts.IsNotEmpty());
text = speciesFacts[0].MainField.GetString();
Assert.IsTrue(text.IsNotEmpty());
}
public void RemoveSpeciesFactsWithBadQuality()
{
Int32 countWithBadQuality, countWithoutBadQuality;
SpeciesFactList speciesFacts;
ISpeciesFactSearchCriteria searchCriteria;
searchCriteria = new SpeciesFactSearchCriteria();
searchCriteria.Add(CoreData.FactorManager.GetFactor(GetUserContext(), 779));
speciesFacts = CoreData.SpeciesFactManager.GetSpeciesFacts(GetUserContext(), searchCriteria);
Assert.IsTrue(speciesFacts.IsNotEmpty());
countWithBadQuality = speciesFacts.Count;
speciesFacts.RemoveSpeciesFactsWithBadQuality();
Assert.IsTrue(speciesFacts.IsNotEmpty());
countWithoutBadQuality = speciesFacts.Count;
Assert.IsTrue(countWithoutBadQuality < countWithBadQuality);
}
/// <summary>
/// Retrieves information about the specified taxon.
/// </summary>
/// <param name="taxonId">Id of the taxon.</param>
/// <returns>Information about the specified taxon.</returns>
public TaxonSpeciesFactViewModel GetTaxonSpeciesFact(int taxonId)
{
mTaxon = CoreData.TaxonManager.GetTaxon(mUserContext, taxonId);
mTaxonSpeciesFact = new TaxonSpeciesFactViewModel(mUserContext, mTaxon);
IIndividualCategory individualCategory = CoreData.FactorManager.GetDefaultIndividualCategory(mUserContext);
IPeriod period = CoreData.FactorManager.GetCurrentRedListPeriod(mUserContext);
PeriodList periods = CoreData.FactorManager.GetPublicPeriods(mUserContext);
IFactor categoryFactor = CoreData.FactorManager.GetFactor(mUserContext, FactorId.RedlistCategory);
IFactor criteriaDocumentationFactor = CoreData.FactorManager.GetFactor(mUserContext, FactorId.RedlistCriteriaDocumentation);
IFactor criteriaFactor = CoreData.FactorManager.GetFactor(mUserContext, FactorId.RedlistCriteriaString);
IFactor globalCategoryFactor = CoreData.FactorManager.GetFactor(mUserContext, FactorId.GlobalRedlistCategory);
//FactorList landscapeTypesFactors = LandscapeTypeCache.GetFactors(mUserContext);
//FactorList lifeFormFactors = LifeFormCache.GetFactors(mUserContext);
FactorList conventionFactors = CoreData.FactorManager.GetFactorTree(mUserContext, FactorId.Conventions).GetAllLeafFactors();
IFactor organismGroup1Factor = CoreData.FactorManager.GetFactor(mUserContext, FactorId.Redlist_OrganismLabel1);
IFactor organismGroup2Factor = CoreData.FactorManager.GetFactor(mUserContext, FactorId.Redlist_OrganismLabel2);
//FactorList countyOccurrenceFactors = CountyOccurrenceCache.GetFactors(mUserContext);
//FactorList biotopeFactors = BiotopeCache.GetFactors(mUserContext);
//FactorList substrateFactors = SubstrateCache.GetFactors(mUserContext);
//FactorList impactFactors = ImpactCache.GetFactors(mUserContext);
IFactor actionPlanFactor = CoreData.FactorManager.GetFactor(mUserContext, FactorId.ActionPlan);
IFactor protectedByLawFactor = CoreData.FactorManager.GetFactor(mUserContext, FactorId.ProtectedByLaw);
IFactor swedishOccurrenceFactor = CoreData.FactorManager.GetFactor(mUserContext, FactorId.SwedishOccurrence);
//FactorList hostFactors = HostCache.GetFactors(mUserContext);
// Get species facts.
var countyOccurrenceSpeciesFacts = new SpeciesFactList();
var landscapeTypeSpeciesFacts = new SpeciesFactList();
var biotopeSpeciesFacts = new SpeciesFactList();
var lifeFormSpeciesFacts = new SpeciesFactList();
var conventionSpeciesFacts = new SpeciesFactList();
var previouslyCategorySpeciesFact = new SpeciesFactList();
ISpeciesFact categorySpeciesFact = null;
ISpeciesFact criteriaDocumentationSpeciesFact = null;
ISpeciesFact criteriaSpeciesFact = null;
ISpeciesFact globalCategorySpeciesFact = null;
ISpeciesFact organismGroup1SpeciesFact = null;
ISpeciesFact organismGroup2SpeciesFact = null;
var substrateSpeciesFacts = new SpeciesFactList();
var impactSpeciesFacts = new SpeciesFactList();
ISpeciesFact actionPlanSpeciesFact = null;
ISpeciesFact protectedByLawSpeciesFact = null;
ISpeciesFact swedishOccurrenceSpeciesFact = null;
var hostSpeciesFacts = new SpeciesFactList();
ISpeciesFactSearchCriteria searchCriteria = new SpeciesFactSearchCriteria {
Factors = new FactorList()
};
searchCriteria.AddTaxon(mTaxon);
searchCriteria.Add(individualCategory);
foreach (IPeriod tempPeriod in periods)
{
searchCriteria.Add(tempPeriod);
}
// Add current period if not exist.
bool currentPeriodExist = periods.Any(tempPeriod => tempPeriod.Id == period.Id);
if (!currentPeriodExist)
{
searchCriteria.Add(period);
}
searchCriteria.Add(categoryFactor);
searchCriteria.Add(criteriaDocumentationFactor);
searchCriteria.Add(criteriaFactor);
searchCriteria.Add(globalCategoryFactor);
//searchCriteria.Factors.AddRange(landscapeTypesFactors);
//searchCriteria.Factors.AddRange(lifeFormFactors);
searchCriteria.Factors.AddRange(conventionFactors);
searchCriteria.Add(organismGroup1Factor);
searchCriteria.Add(organismGroup2Factor);
//searchCriteria.Factors.AddRange(countyOccurrenceFactors);
//searchCriteria.Factors.AddRange(biotopeFactors);
//searchCriteria.Factors.AddRange(substrateFactors);
//searchCriteria.Factors.AddRange(impactFactors);
searchCriteria.Add(actionPlanFactor);
searchCriteria.Add(protectedByLawFactor);
searchCriteria.Add(swedishOccurrenceFactor);
//searchCriteria.Factors.AddRange(hostFactors);
SpeciesFactList speciesFacts = CoreData.SpeciesFactManager.GetSpeciesFacts(mUserContext, searchCriteria);
// Split species facts into information groups.
if (speciesFacts.IsNotEmpty())
{
foreach (ISpeciesFact speciesFact in speciesFacts)
{
//if (countyOccurrenceFactors.Exists(speciesFact.Factor))
//{
// countyOccurrenceSpeciesFacts.Add(speciesFact);
//}
//else if (landscapeTypesFactors.Exists(speciesFact.Factor))
//{
// landscapeTypeSpeciesFacts.Add(speciesFact);
//}
//else if (biotopeFactors.Exists(speciesFact.Factor))
//{
// biotopeSpeciesFacts.Add(speciesFact);
//}
//else if (substrateFactors.Exists(speciesFact.Factor))
//{
// substrateSpeciesFacts.Add(speciesFact);
// if (hostFactors.Exists(speciesFact.Factor))
// {
// hostSpeciesFacts.Add(speciesFact);
// }
//}
//else if (impactFactors.Exists(speciesFact.Factor))
//{
// impactSpeciesFacts.Add(speciesFact);
//}
//else if (lifeFormFactors.Exists(speciesFact.Factor))
//{
// lifeFormSpeciesFacts.Add(speciesFact);
//}
if (conventionFactors.Exists(speciesFact.Factor))
{
conventionSpeciesFacts.Add(speciesFact);
}
else if (speciesFact.Factor.Id == (int)FactorId.RedlistCategory && speciesFact.Period.Id != period.Id)
{
previouslyCategorySpeciesFact.Add(speciesFact);
}
else
{
switch (speciesFact.Factor.Id)
{
case (int)FactorId.ActionPlan:
actionPlanSpeciesFact = speciesFact;
break;
case (int)FactorId.GlobalRedlistCategory:
globalCategorySpeciesFact = speciesFact;
break;
case (int)FactorId.ProtectedByLaw:
protectedByLawSpeciesFact = speciesFact;
break;
case (int)FactorId.RedlistCategory:
categorySpeciesFact = speciesFact;
break;
case (int)FactorId.RedlistCriteriaDocumentation:
criteriaDocumentationSpeciesFact = speciesFact;
break;
case (int)FactorId.RedlistCriteriaString:
criteriaSpeciesFact = speciesFact;
break;
case (int)FactorId.Redlist_OrganismLabel1:
organismGroup1SpeciesFact = speciesFact;
break;
case (int)FactorId.Redlist_OrganismLabel2:
organismGroup2SpeciesFact = speciesFact;
break;
case (int)FactorId.SwedishOccurrence:
swedishOccurrenceSpeciesFact = speciesFact;
break;
}
}
}
}
//mTaxonSpeciesFact.InitCountyOccurrenceInformation(countyOccurrenceSpeciesFacts);
//mTaxonSpeciesFact.InitLandscapeTypeInformation(landscapeTypeSpeciesFacts);
//mTaxonSpeciesFact.InitBiotopeInformation(biotopeSpeciesFacts);
//mTaxonSpeciesFact.InitLifeFormInformation(lifeFormSpeciesFacts);
//mTaxonSpeciesFact.InitConventionInformation(conventionSpeciesFacts);
InitRedListInformation(
mTaxonSpeciesFact,
categorySpeciesFact,
criteriaSpeciesFact,
criteriaDocumentationSpeciesFact,
globalCategorySpeciesFact,
period);
//mTaxonSpeciesFact.InitOrganismGroupInformation(organismGroup1SpeciesFact,
// organismGroup2SpeciesFact);
//mTaxonSpeciesFact.InitSubstrateInformation(substrateSpeciesFacts);
//mTaxonSpeciesFact.InitImpactInformation(impactSpeciesFacts);
//mTaxonSpeciesFact.InitActionPlanInformation(actionPlanSpeciesFact);
//mTaxonSpeciesFact.InitProtectedByLawInformation(protectedByLawSpeciesFact);
//mTaxonSpeciesFact.InitHostInformation(hostSpeciesFacts, mUserContext);
//mTaxonSpeciesFact.InitSwedishOccurrenceInformation(swedishOccurrenceSpeciesFact);
//mTaxonSpeciesFact.InitPreviouslyRedListedCategories(previouslyCategorySpeciesFact);
//GetSpeciesInformationDocument();
//long pictureId;
//mTaxonSpeciesFact.HasImage = !string.IsNullOrWhiteSpace(GetPictureByTaxon(mTaxon,
// AppSettings.Default.PictureXtraLargeHeight,
// AppSettings.Default.PictureXtraLargeWidth,
// AppSettings.Default.PictureLargeSize,
// true,
// string.Empty,
// out pictureId));
//mTaxonSpeciesFact.ImageMetaData = GetPictureMetadataByPictureId(pictureId);
//mTaxonSpeciesFact.HasCountyMap = GetCountyMap(mTaxon) != null;
//mTaxonSpeciesFact.HasObservationMap = SpeciesFilter.IsTaxaSpeciesOrBelow(mTaxon) &&
// SpeciesFactCacheManager.Instance.GetObservationMap(mTaxon.Id.ToString(CultureInfo.InvariantCulture)) != null;
mTaxonSpeciesFact.HasSpeciesFacts = HasSpeciesFacts(speciesFacts);
mTaxonSpeciesFact.IsValid = CheckIfTaxonValid();
//mTaxonSpeciesFact.Synonyms = mTaxon.GetSynonymsViewModel(mUserContext);
// Identify higher level taxa
//mTaxonSpeciesFact.CategoryNameHighLevel = SpeciesFilter.IsTaxaSpeciesOrBelow(mTaxon) ? "" : mTaxon.Category.Name + " - ";
//// Ignore if not higher taxa
//if ((mTaxonSpeciesFact.IsHigherTaxa = !SpeciesFilter.IsTaxaSpeciesOrBelow(mTaxon)) == false)
//{
// return mTaxonSpeciesFact;
//}
// Count all occurences for each category in underlying taxa
//var taxonNameSearchInformation = TaxonNameSearchManager.Instance.GetInformation(this.mTaxon.Id);
//foreach (var category in RedListedHelper.GetAllRedListCategories())
//{
// mTaxonSpeciesFact.RedListCategoryTaxa[category] = new List<int>();
//}
//foreach (var taxonInfoType in taxonNameSearchInformation.AllChildTaxaIdsInScope)
//{
// if (SpeciesFilter.IsTaxaSpeciesOrBelow(taxonInfoType.CategoryId, taxonInfoType.ParentCategoryId) && taxonInfoType.HasValidRedListCategory)
// {
// mTaxonSpeciesFact.RedListCategoryTaxa[taxonInfoType.RedListCategoryId].Add(taxonInfoType.TaxonId);
// }
//}
return(mTaxonSpeciesFact);
}
