/// <summary>
/// Parse data based on options.
/// </summary>
/// <param name="options">options</param>
/// <param name="sort">sort function used to sort features</param>
/// <returns>Sorted feature names</returns>
public List <string> Parse(SimpleDataTableBuilderOptions options, Action <List <string> > sort)
{
Clear();
var format = new FeatureItemGroupXmlFormat();
this.AddRange(from file in options.GetCountFiles()
let xmlfile = file.File.EndsWith(".xml") ? file.File : file.File + ".mapped.xml"
select new MappedCountItem()
{
ItemName = file.Name,
NameGroupMap = (from m in format.ReadFromFile(xmlfile)
from n in m
select new FeatureItemGroup(n)).ToDictionary(m => m.Name)
});
var names = (from countItem in this
from featureName in countItem.NameGroupMap.Keys
select featureName).Distinct().ToList();
sort(names);
Console.WriteLine("merging subjects with identical queries...");
for (int i = names.Count - 1; i >= 0; i--)
{
for (int j = i - 1; j >= 0; j--)
{
if (this.All(m => HasSameQuery(m.NameGroupMap, names[j], names[i])))
{
this.ForEach(m => MergeGroup(m.NameGroupMap, names[j], names[i]));
Console.WriteLine("Merge " + names[i] + " into " + names[j]);
}
}
}
Console.WriteLine("merging subjects with identical queries done.");
this.ForEach(m => m.InitializeDisplayNameMap());
var result = (from m in this
from n in m.DisplayNameGroupMap.Keys
select n).Distinct().ToList();
sort(result);
return(result);
}
public MappedPositionBuilder(SimpleDataTableBuilderOptions options)
{
this.options = options;
}
public MappedCountTableBuilder(SimpleDataTableBuilderOptions options)
{
this.options = options;
}
public MappedPositionBuilder(SimpleDataTableBuilderOptions options)
{
this.options = options;
}
public MappedCountTableBuilder(SimpleDataTableBuilderOptions options)
{
this.options = options;
}
