private static void AddSaPositon(ISaPosition saPosition, IAnnotatedVariant annotatedVariant)
{
foreach (var dataSource in saPosition.DataSources)
{
var saAltAllele = SaReaderUtils.GetReducedAllele(annotatedVariant.Variant.RefAllele,
annotatedVariant.Variant.AltAllele);
if (dataSource.MatchByAllele && dataSource.AltAllele != saAltAllele)
{
continue;
}
annotatedVariant.SupplementaryAnnotations.Add(new AnnotatedSaDataSource(dataSource, saAltAllele));
}
}
public void GetReducedAlleleTest(string refAllele, string altAllele, string expectedOut)
{
var reducedAllele = SaReaderUtils.GetReducedAllele(refAllele, altAllele);
Assert.Equal(expectedOut, reducedAllele);
}
