/// <summary>
/// Constructor
/// </summary>
public AlignmentViewModel()
{
Options = new RuntimeOptionsViewModel();
_isScreenSplit = false;
_rightPaneSize = Double.PositiveInfinity;
SplitScreenCommand = new DelegatingCommand(() => IsScreenSplit = !IsScreenSplit);
ShowOptionsCommand = new DelegatingCommand(OnShowOptions);
ShowBirdsEyeView = new DelegatingCommand(OnShowBev);
MakeReferenceSequence = new DelegatingCommand <AlignmentEntityViewModel>(OnMakeReferenceSequence);
FlipGrouping = new DelegatingCommand(() => IsGrouped = !IsGrouped, () => SupportsGrouping);
GotoColumn = new DelegatingCommand(OnGotoColumn);
GotoRow = new DelegatingCommand(OnGotoRow);
GotoRefColumn = new DelegatingCommand(OnGotoRefColumn, () => HasReferenceSequence);
FindByName = new DelegatingCommand(OnFindByName);
JumpNextNucleotide = new DelegatingCommand(OnGotoNextNucleotide, () => FocusedRow != null && FocusedColumnIndex < TotalColumns - 1);
JumpPreviousNucleotide = new DelegatingCommand(OnGotoPreviousNucleotide, () => FocusedRow != null && FocusedColumnIndex > 0);
JumpNextRefNucleotide = new DelegatingCommand(OnGotoNextRefNucleotide, () => FocusedRow != null && FocusedColumnIndex < TotalColumns - 1 && HasReferenceSequence);
JumpPreviousRefNucleotide = new DelegatingCommand(OnGotoPreviousRefNucleotide, () => FocusedRow != null && FocusedColumnIndex > 0 && HasReferenceSequence);
ShiftFocusLeft = new DelegatingCommand(OnShiftFocusLeft, () => FocusedRow != null);
ShiftFocusRight = new DelegatingCommand(OnShiftFocusRight, () => FocusedRow != null);
FindByTaxonomy = new DelegatingCommand(OnFindByTaxonomy, () => IsGrouped);
OptionsMenu.Add(new MenuItem("Change _View Options")
{
Command = ShowOptionsCommand, GestureText = "Ctrl+O"
});
_groupByMenuItem = new MenuItem("Group By Taxonomy")
{
Command = FlipGrouping, IsChecked = IsGrouped, GestureText = "Ctrl+G"
};
OptionsMenu.Add(_groupByMenuItem);
_splitScreenMenuItem = new MenuItem("Split Screen View")
{
Command = SplitScreenCommand, IsChecked = IsScreenSplit, GestureText = "Ctrl+S"
};
ViewMenu.Add(_splitScreenMenuItem);
ViewMenu.Add(new MenuItem("_Taxonomy Browser")
{
Command = FindByTaxonomy, GestureText = "Ctrl+T"
});
ViewMenu.Add(new MenuItem("Birds-Eye Viewer")
{
Command = ShowBirdsEyeView, GestureText = "Ctrl+B"
});
EditMenu.Add(new MenuItem("Jump To _Column")
{
Command = GotoColumn, GestureText = "Ctrl+C"
});
EditMenu.Add(new MenuItem("Jump To _Row")
{
Command = GotoRow, GestureText = "Ctrl+R"
});
EditMenu.Add(new MenuItem());
EditMenu.Add(new MenuItem("Jump To Previous Nucelotide")
{
Command = JumpPreviousNucleotide, GestureText = "F2"
});
EditMenu.Add(new MenuItem("Jump To Next Nucelotide")
{
Command = JumpNextNucleotide, GestureText = "F3"
});
EditMenu.Add(new MenuItem());
EditMenu.Add(new MenuItem("Jump To Reference Nucelotide")
{
Command = GotoRefColumn, GestureText = "Ctrl+N"
});
EditMenu.Add(new MenuItem("Jump To Previous Reference Nucelotide")
{
Command = JumpPreviousRefNucleotide, GestureText = "Ctrl+F2"
});
EditMenu.Add(new MenuItem("Jump To Next Reference Nucelotide")
{
Command = JumpNextRefNucleotide, GestureText = "Ctrl+F3"
});
EditMenu.Add(new MenuItem());
EditMenu.Add(new MenuItem("Find By _Name")
{
Command = FindByName, GestureText = "Ctrl+F"
});
NucleotideColorSelector = new NucleotideColorSelector(this, Options);
_leftView = new SplitPaneViewModel(this);
_rightView = new SplitPaneViewModel(this);
// Set the intial view
SetActiveView(_leftView);
}
public NucleotideColorSelector(AlignmentViewModel mainVm, RuntimeOptionsViewModel options)
{
_options = options;
_mainVm = mainVm;
}
