public void GenerateNewMembers()
{
SelectMembers();
OldRunners = new QwopRunner[popSize]; // deep copy that shit
for (int i = 0; i < popSize; i++)
{
OldRunners[i] = Runners[i];
}
Random rn = new Random();
List <QwopRunner> available = Runners.ToList <QwopRunner>();
QwopRunner[] newRunners = new QwopRunner[popSize];
for (int i = 0; i < popSize; i += 2)
{
// choose the two mates based on fittest local neighbors (cellular GA)
QwopRunner mateOne = available[0];
QwopRunner mateTwo = available[1];
int mateTwoIndex = 1;
//foreach (QwopRunner r in available) Console.WriteLine(r.ToString());
for (int j = 2; j <= numNeighbors && j < available.Count; j++)
{
if (available[j].Fitness > mateTwo.Fitness)
{
mateTwo = available[j];
mateTwoIndex = j;
}
}
available.RemoveAt(0);
available.RemoveAt(mateTwoIndex - 1); // every member can only have one mate, so remove the used members
// time to perform some crossover
int spliceLocOne = rn.Next(0, mateOne.InitSeq.Length);
int spliceLocTwo = rn.Next(0, mateTwo.InitSeq.Length);
string newInitSeqOne = mateOne.InitSeq.Substring(0, spliceLocOne) + mateTwo.InitSeq.Substring(spliceLocTwo, mateTwo.InitSeq.Length - spliceLocTwo);
string newInitSeqTwo = mateTwo.InitSeq.Substring(0, spliceLocTwo) + mateOne.InitSeq.Substring(spliceLocOne, mateOne.InitSeq.Length - spliceLocOne);
spliceLocOne = rn.Next(0, mateOne.ComSeq.Length);
spliceLocTwo = rn.Next(0, mateTwo.ComSeq.Length);
string newComSeqOne = mateOne.ComSeq.Substring(0, spliceLocOne) + mateTwo.ComSeq.Substring(spliceLocTwo, mateTwo.ComSeq.Length - spliceLocTwo);
string newComSeqTwo = mateTwo.ComSeq.Substring(0, spliceLocTwo) + mateOne.ComSeq.Substring(spliceLocOne, mateOne.ComSeq.Length - spliceLocOne);
// store the new population members accordingly
newRunners[i] = new QwopRunner(newInitSeqOne, newComSeqOne, mateOne, mateTwo);
newRunners[i + 1] = new QwopRunner(newInitSeqTwo, newComSeqTwo, mateOne, mateTwo);
if (rn.NextDouble() < mutationRate)
{
newRunners[i].InitSeq = MutateCode(newRunners[i].InitSeq);
}
if (rn.NextDouble() < mutationRate)
{
newRunners[i].ComSeq = MutateCode(newRunners[i].ComSeq);
}
if (rn.NextDouble() < mutationRate)
{
newRunners[i + 1].InitSeq = MutateCode(newRunners[i].InitSeq);
}
if (rn.NextDouble() < mutationRate)
{
newRunners[i + 1].ComSeq = MutateCode(newRunners[i].ComSeq);
}
// Console.WriteLine(mateOne.ToString() + " + \n" + mateTwo.ToString() + " = \n" + newRunners[i].ToString() + " and \n" + newRunners[i + 1].ToString());
}
Runners = newRunners;
}
