/// <summary>
/// Parses a text containing taxonids and return the corresponding taxa
/// </summary>
/// <param name="text">The text containing taxonids.</param>
/// <param name="rowDelimiter">The row delimiter type.</param>
/// <returns></returns>
public List <ITaxon> GetMatchingTaxaFromText(string text, RowDelimiter rowDelimiter)
{
string[] stringArray = null;
switch (rowDelimiter)
{
case RowDelimiter.ReturnLinefeed:
stringArray = text.Split('\n');
break;
case RowDelimiter.Semicolon:
stringArray = text.Split(';');
break;
case RowDelimiter.Tab:
stringArray = text.Split('\t');
break;
case RowDelimiter.VerticalBar:
stringArray = text.Split('|');
break;
default:
stringArray = text.Split('\n');
break;
}
stringArray = stringArray.Distinct().ToArray();
return(GetMatches(stringArray));
}
public DelimitedTextDataset(
string folderName,
string fileName,
string folderPath = default,
ColumnDelimiter columnDelimiter = default,
RowDelimiter rowDelimiter = default,
EncodingName encodingName = default,
CompressionCodec compressionCodec = default,
CompressionLevel compressionLevel = default,
QuoteChar quoteChar = default,
EscapeChar escapeChar = default,
bool firstRowAsHeader = false,
string nullValue = default,
IList <SchemaColumn> schema = default)
{
FolderName = folderName;
FileName = fileName;
FolderPath = folderPath;
ColumnDelimiter = columnDelimiter;
RowDelimiter = rowDelimiter;
EncodingName = encodingName;
CompressionCodec = compressionCodec;
CompressionLevel = compressionLevel;
QuoteChar = quoteChar;
EscapeChar = escapeChar;
FirstRowAsHeader = firstRowAsHeader;
NullValue = nullValue;
Schema = schema;
}
public IEnumerable <string> EnumRows()
{
switch (RowDelimiter)
{
case RowDelimiterType.Lines:
return(EnumRows_Lines());
case RowDelimiterType.Separator:
return(EnumRows_Separator());
case RowDelimiterType.Limitation:
return(EnumRows_Limitation());
case RowDelimiterType.Regex:
return(EnumRows_Regex());
}
throw new InternalError("DAE-00063 Unknown row delimiter:" + RowDelimiter.ToString());
}
/// <summary>
/// Tries to parse the text into taxon ids and return a list of taxons.
/// </summary>
/// <param name="text">The text with taxonids.</param>
/// <param name="rowDelimiter">The row delimiter type.</param>
/// <returns></returns>
public List <ITaxon> GetMatchingTaxaFromText(string text, RowDelimiter rowDelimiter)
{
var matchManager = new TaxonMatchManager(UserContext);
return(matchManager.GetMatchingTaxaFromText(text, rowDelimiter));
}