private SourceInfo[] getSourceInfo(FileInfo fileInfo, bool getDetails)
{
var sourceInfoList = new List <SourceInfo>();
sourceInfoList.Add(new SourceInfo());
sourceInfoList[0].type = getSourceType(fileInfo);
sourceInfoList[0].name = fileInfo.Name;
sourceInfoList[0].hasDetails = getDetails;
sourceInfoList[0].size = (UInt64)fileInfo.Length;
sourceInfoList[0].dateModified = fileInfo.LastWriteTime;
if (sourceInfoList[0].type != String.Empty)
{
if (!getDetails)
{
return(sourceInfoList.ToArray());
}
try
{
ReaderList readerList = ReaderList.FullReaderList;
var readerConfig = new ReaderConfig
{
simAsSpectra = Properties.Settings.Default.SimAsSpectra,
srmAsSpectra = Properties.Settings.Default.SrmAsSpectra,
combineIonMobilitySpectra = Properties.Settings.Default.CombineIonMobilitySpectra,
ignoreZeroIntensityPoints = Properties.Settings.Default.IgnoreZeroIntensityPoints,
acceptZeroLengthSpectra = Properties.Settings.Default.AcceptZeroLengthSpectra,
allowMsMsWithoutPrecursor = false
};
MSDataList msInfo = new MSDataList();
readerList.read(fileInfo.FullName, msInfo, readerConfig);
foreach (MSData msData in msInfo)
{
SourceInfo sourceInfo = new SourceInfo();
sourceInfo.type = sourceInfoList[0].type;
sourceInfo.name = sourceInfoList[0].name;
if (msInfo.Count > 1)
{
sourceInfo.name += " (" + msData.run.id + ")";
}
sourceInfo.populateFromMSData(msData);
sourceInfoList.Add(sourceInfo);
}
} catch
{
sourceInfoList[0].spectra = 0;
sourceInfoList[0].type = "Invalid " + sourceInfoList[0].type;
}
foreach (SourceInfo sourceInfo in sourceInfoList)
{
sourceInfo.size = (UInt64)fileInfo.Length;
sourceInfo.dateModified = fileInfo.LastWriteTime;
}
return(sourceInfoList.ToArray());
}
return(null);
}
public bool CheckAccessLevel(string charName, BoardAccessLevel level)
{
var checkname = charName.ToLower();
if (ModeratorList.Contains(checkname))
{
return(true);
}
if (BlockList.Contains(checkname))
{
return(false);
}
switch (level)
{
case BoardAccessLevel.Read:
return(ReaderList.Count == 0 || ReaderList.Contains(checkname) || WriterList.Contains(checkname));
case BoardAccessLevel.Write:
return(WriterList.Count == 0 || WriterList.Contains(checkname));
case BoardAccessLevel.Moderate:
return(ModeratorList.Contains(checkname));
}
return(false);
}
public Form1()
{
InitializeComponent();
var x = new ReaderList();
x.CardPresented += x_CardPresented;
x.Refresh();
}
private SourceInfo[] getSourceInfo(FileInfo fileInfo, bool getDetails)
{
var sourceInfoList = new List <SourceInfo>();
sourceInfoList.Add(new SourceInfo());
sourceInfoList[0].type = getSourceType(fileInfo);
sourceInfoList[0].name = fileInfo.Name;
sourceInfoList[0].hasDetails = getDetails;
sourceInfoList[0].size = (UInt64)fileInfo.Length;
sourceInfoList[0].dateModified = fileInfo.LastWriteTime;
if (sourceInfoList[0].type != String.Empty)
{
if (!getDetails)
{
return(sourceInfoList.ToArray());
}
try
{
ReaderList readerList = ReaderList.FullReaderList;
var readerConfig = new ReaderConfig
{
simAsSpectra = Program.SimAsSpectra,
srmAsSpectra = Program.SrmAsSpectra
};
MSDataList msInfo = new MSDataList();
readerList.read(fileInfo.FullName, msInfo, readerConfig);
foreach (MSData msData in msInfo)
{
SourceInfo sourceInfo = new SourceInfo();
sourceInfo.type = sourceInfoList[0].type;
sourceInfo.name = sourceInfoList[0].name;
if (msInfo.Count > 1)
{
sourceInfo.name += " (" + msData.run.id + ")";
}
sourceInfo.populateFromMSData(msData);
sourceInfoList.Add(sourceInfo);
}
} catch
{
sourceInfoList[0].spectra = 0;
sourceInfoList[0].type = "Invalid " + sourceInfoList[0].type;
}
foreach (SourceInfo sourceInfo in sourceInfoList)
{
sourceInfo.size = (UInt64)fileInfo.Length;
sourceInfo.dateModified = fileInfo.LastWriteTime;
}
return(sourceInfoList.ToArray());
}
return(null);
}
private void ReaderList_SelectionChanged(object sender, SelectionChangedEventArgs e)
{
var selectedReader = ReaderList.SelectedItem as Reader;
if (selectedReader != null)
{
var window = new ReaderEditor(selectedReader);
if (window.ShowDialog() ?? false)
{
LoadBorrowedBooksList();
LoadReaderData();
}
ReaderList.UnselectAll();
}
}
public void SetAccessLevel(string charName, BoardAccessLevel level)
{
if (level == BoardAccessLevel.Read)
{
ReaderList.Add(charName.ToLower());
}
if (level == BoardAccessLevel.Moderate)
{
ModeratorList.Add(charName.ToLower());
}
if (level == BoardAccessLevel.Write)
{
WriterList.Add(charName.ToLower());
}
}
public static void Create(ReaderPlatform readerPlatform)
{
try
{
ReaderList.Load(readerPlatform);
while (true)
{
Thread.Sleep(60000);
ReaderList.SyncList(readerPlatform);
ReaderList.GetLatestNews();
GC.Collect();
}
}
catch (Exception ex)
{
Console.WriteLine(ex.ToString());
Create(readerPlatform);
}
}
/// <summary>
/// 获取数据
/// </summary>
public void GetDate()
{
try
{
List <SeatManage.ClassModel.AMS_Advertisement> modelList = SeatManage.Bll.AdvertisementOperation.GetAdList(null, SeatManage.EnumType.AdType.ReaderAd);
ReaderList.Clear();
foreach (SeatManage.ClassModel.AMS_Advertisement model in modelList)
{
SeatManage.ClassModel.ReaderAdvertInfo view = SeatManage.ClassModel.ReaderAdvertInfo.ToModel(model.AdContent);
view.AdContent = model.AdContent;
view.ID = model.ID;
ReaderList.Add(view);
}
}
catch (Exception ex)
{
ErrorMessage = ex.Message;
SeatManage.SeatManageComm.WriteLog.Write("获取学校通知失败" + ex.Message);
}
}
public void Initialization()
{
ReaderList.Clear();
string filePath = (AppDomain.CurrentDomain.BaseDirectory) + @"\obj";
ReaderList.Add(new RakunNodeFor());
ReaderList.Add(new RakunNodeValue()
{
ModuleName = "HIGH"
});
ReaderList.Add(new RakunNodeValue()
{
ModuleName = "LOW"
});
if (System.IO.Directory.Exists(filePath) == false)
{
System.IO.Directory.CreateDirectory(filePath);
}
System.IO.DirectoryInfo di = new System.IO.DirectoryInfo(filePath);
foreach (System.IO.FileInfo f in di.GetFiles())
{
if (System.IO.Path.GetExtension(f.FullName) == ".rkn")
{
AddRakunReader(f.FullName);
}
}
RaisePropertyChanged("ReaderList");
//TestApplacation();
}
void processFile(string filename, Config config, ReaderList readers)
{
// read in data file
using (var msdList = new MSDataList())
{
string msg = String.Format("Opening file \"{0}\" for read...", filename);
if (LogUpdate != null)
{
LogUpdate(msg, _info);
}
if (StatusUpdate != null)
{
StatusUpdate(msg, ProgressBarStyle.Marquee, _info);
}
readers.read(filename, msdList);
foreach (var msd in msdList)
{
var outputFilename = config.outputFilename(filename, msd);
if (filename == outputFilename)
{
throw new ArgumentException("Output filepath is the same as input filepath");
}
if (StatusUpdate != null)
{
StatusUpdate("Waiting...", ProgressBarStyle.Marquee, _info);
}
// only one thread
lock (calculateSHA1Mutex)
{
if (LogUpdate != null)
{
LogUpdate("Calculating SHA1 checksum...", _info);
}
if (StatusUpdate != null)
{
StatusUpdate("Calculating SHA1 checksum...", ProgressBarStyle.Marquee, _info);
}
MSDataFile.calculateSHA1Checksums(msd);
}
if (LogUpdate != null)
{
LogUpdate("Processing...", _info);
}
if (StatusUpdate != null)
{
StatusUpdate("Processing...", ProgressBarStyle.Marquee, _info);
}
SpectrumListFactory.wrap(msd, config.Filters);
if ((msd.run.spectrumList == null) || msd.run.spectrumList.empty())
{
if ((msd.run.chromatogramList != null) && !msd.run.chromatogramList.empty())
{
msg = "Note: input contains only chromatogram data.";
switch (config.WriteConfig.format)
{
case MSDataFile.Format.Format_MZ5:
case MSDataFile.Format.Format_mzML:
break;
default:
msg += " The selected output format can only represent spectra. Consider using mzML instead.";
break;
}
}
else
{
msg = "Note: input contains no spectra or chromatogram data.";
}
if (LogUpdate != null)
{
LogUpdate(msg, _info);
}
if (StatusUpdate != null)
{
StatusUpdate(msg, ProgressBarStyle.Continuous, _info);
}
}
if (StatusUpdate != null && msd.run.spectrumList != null)
{
StatusUpdate(String.Format("Processing ({0} of {1})",
DataGridViewProgressCell.MessageSpecialValue.CurrentValue,
DataGridViewProgressCell.MessageSpecialValue.Maximum),
ProgressBarStyle.Continuous, _info);
}
// write out the new data file
var ilr = new IterationListenerRegistry();
ilr.addListener(this, 100);
msg = String.Format("Writing \"{0}\"...", outputFilename);
if (LogUpdate != null)
{
LogUpdate(msg, _info);
}
if (StatusUpdate != null)
{
StatusUpdate(msg, ProgressBarStyle.Continuous, _info);
}
MSDataFile.write(msd, outputFilename, config.WriteConfig, ilr);
ilr.removeListener(this);
}
}
}
public void AddRakunReader(string path)
{
if (System.IO.Path.GetFileNameWithoutExtension(path) == "IF Equal")
{
System.IO.StreamReader file = new System.IO.StreamReader(path);
RakunNodeIf reader = new RakunNodeIf();
reader.ModuleName = System.IO.Path.GetFileNameWithoutExtension(path);
reader.readXML(file.ReadToEnd());
ReaderList.Add(reader);
file.Close();
}
else if (System.IO.Path.GetFileNameWithoutExtension(path) == "IF Smaller")
{
System.IO.StreamReader file = new System.IO.StreamReader(path);
RakunNodeIf reader = new RakunNodeIf();
reader.ModuleName = System.IO.Path.GetFileNameWithoutExtension(path);
reader.readXML(file.ReadToEnd());
ReaderList.Add(reader);
file.Close();
}
else if (System.IO.Path.GetFileNameWithoutExtension(path) == "IF Bigger")
{
System.IO.StreamReader file = new System.IO.StreamReader(path);
RakunNodeIf reader = new RakunNodeIf();
reader.ModuleName = System.IO.Path.GetFileNameWithoutExtension(path);
reader.readXML(file.ReadToEnd());
ReaderList.Add(reader);
file.Close();
}
else if (System.IO.Path.GetFileNameWithoutExtension(path) == "IF Diffrent")
{
System.IO.StreamReader file = new System.IO.StreamReader(path);
RakunNodeIf reader = new RakunNodeIf();
reader.ModuleName = System.IO.Path.GetFileNameWithoutExtension(path);
reader.readXML(file.ReadToEnd());
ReaderList.Add(reader);
file.Close();
}
else if (System.IO.Path.GetFileNameWithoutExtension(path) == "IF Diffrent")
{
System.IO.StreamReader file = new System.IO.StreamReader(path);
RakunNodeIf reader = new RakunNodeIf();
reader.ModuleName = System.IO.Path.GetFileNameWithoutExtension(path);
reader.readXML(file.ReadToEnd());
ReaderList.Add(reader);
file.Close();
}
else if (System.IO.Path.GetFileNameWithoutExtension(path) == "Value")
{
System.IO.StreamReader file = new System.IO.StreamReader(path);
RakunNodeInput reader = new RakunNodeInput();
reader.ModuleName = System.IO.Path.GetFileNameWithoutExtension(path);
reader.readXML(file.ReadToEnd());
ReaderList.Add(reader);
inputNode = reader;
file.Close();
}
else
{
System.IO.StreamReader file = new System.IO.StreamReader(path);
RakunWin32.Logic.RakunNodeModule reader = new Logic.RakunNodeModule();
reader.ModuleName = System.IO.Path.GetFileNameWithoutExtension(path);
reader.readXML(file.ReadToEnd());
ReaderList.Add(reader);
file.Close();
}
}
void processFile(string filename, Config config, ReaderList readers, Map <string, int> usedOutputFilenames)
{
// read in data file
using (var msdList = new MSDataList())
{
string msg = String.Format("Opening file \"{0}\" for read...", filename);
var stripCredentialsMatch = Regex.Match(filename, "https?://([^:]+:[^@]+@).*", RegexOptions.CultureInvariant | RegexOptions.IgnoreCase);
if (stripCredentialsMatch.Success)
{
msg = msg.Replace(stripCredentialsMatch.Groups[1].Value, "");
}
LogUpdate?.Invoke(msg, _info);
StatusUpdate?.Invoke(msg, ProgressBarStyle.Marquee, _info);
readers.read(filename, msdList, config.ReaderConfig);
foreach (var msd in msdList)
{
try
{
var outputFilename = config.outputFilename(filename, msd);
string deduplicatedFilename = outputFilename;
StatusUpdate?.Invoke("Waiting...", ProgressBarStyle.Marquee, _info);
// only one thread
lock (_calculateSHA1Mutex)
{
// if output name is same as input name, add a suffix
if (filename == outputFilename)
{
++usedOutputFilenames[outputFilename];
}
if (usedOutputFilenames.Contains(deduplicatedFilename))
{
deduplicatedFilename = deduplicatedFilename.Replace(Path.GetExtension(outputFilename), String.Format(" ({0}).{1}", usedOutputFilenames[outputFilename] + 1, Path.GetExtension(outputFilename)));
}
++usedOutputFilenames[outputFilename];
LogUpdate?.Invoke("Calculating SHA1 checksum...", _info);
StatusUpdate?.Invoke("Calculating SHA1 checksum...", ProgressBarStyle.Marquee, _info);
MSDataFile.calculateSHA1Checksums(msd);
}
var ilr = new IterationListenerRegistry();
ilr.addListenerWithTimer(this, 1);
LogUpdate?.Invoke("Processing...", _info);
StatusUpdate?.Invoke("Processing...", ProgressBarStyle.Marquee, _info);
SpectrumListFactory.wrap(msd, config.Filters, ilr);
config.WriteConfig.useWorkerThreads = msd.run.spectrumList.benefitsFromWorkerThreads();
if ((msd.run.spectrumList == null) || msd.run.spectrumList.empty())
{
if ((msd.run.chromatogramList != null) && !msd.run.chromatogramList.empty())
{
msg = "Note: input contains only chromatogram data.";
switch (config.WriteConfig.format)
{
case MSDataFile.Format.Format_MZ5:
case MSDataFile.Format.Format_mzML:
break;
default:
msg += " The selected output format can only represent spectra. Consider using mzML instead.";
break;
}
}
else
{
msg = "Note: input contains no spectra or chromatogram data.";
}
LogUpdate?.Invoke(msg, _info);
StatusUpdate?.Invoke(msg, ProgressBarStyle.Continuous, _info);
}
if (StatusUpdate != null && msd.run.spectrumList != null)
{
StatusUpdate(String.Format("Processing ({0} of {1})",
DataGridViewProgressCell.MessageSpecialValue.CurrentValue,
DataGridViewProgressCell.MessageSpecialValue.Maximum),
ProgressBarStyle.Continuous, _info);
}
// write out the new data file
msg = String.Format("Writing \"{0}\"...", deduplicatedFilename);
LogUpdate?.Invoke(msg, _info);
StatusUpdate?.Invoke(msg, ProgressBarStyle.Continuous, _info);
MSDataFile.write(msd, deduplicatedFilename, config.WriteConfig, ilr);
ilr.removeListener(this);
}
finally
{
msd.Dispose();
}
}
}
}
/// <summary>
/// 注册数据读执行者
/// </summary>
/// <param name="item"></param>
public void RegistReader(AbstractReader item)
{
ReaderList.Add(item);
}
void processFile(string filename, Config config, ReaderList readers)
{
if (LogUpdate != null)
{
LogUpdate("Opening file...", _info);
}
if (StatusUpdate != null)
{
StatusUpdate("Opening file...", ProgressBarStyle.Marquee, _info);
}
// read in data file
using (var msdList = new MSDataList())
{
readers.read(filename, msdList);
foreach (var msd in msdList)
{
var outputFilename = config.outputFilename(filename, msd);
if (filename == outputFilename)
{
throw new ArgumentException("Output filepath is the same as input filepath");
}
if (LogUpdate != null)
{
LogUpdate("Calculating SHA1 checksum...", _info);
}
if (StatusUpdate != null)
{
StatusUpdate("Calculating SHA1 checksum...", ProgressBarStyle.Marquee, _info);
}
// only one thread
lock (calculateSHA1Mutex)
MSDataFile.calculateSHA1Checksums(msd);
if (LogUpdate != null)
{
LogUpdate("Processing...", _info);
}
if (StatusUpdate != null)
{
StatusUpdate("Processing...", ProgressBarStyle.Marquee, _info);
}
SpectrumListFactory.wrap(msd, config.Filters);
if (StatusUpdate != null && msd.run.spectrumList != null)
{
StatusUpdate(String.Format("Processing ({0} of {1})",
DataGridViewProgressCell.MessageSpecialValue.CurrentValue,
DataGridViewProgressCell.MessageSpecialValue.Maximum),
ProgressBarStyle.Continuous, _info);
}
// write out the new data file
IterationListenerRegistry ilr = null;
ilr = new IterationListenerRegistry();
ilr.addListener(this, 100);
MSDataFile.write(msd, outputFilename, config.WriteConfig, ilr);
}
}
}
void processFile(string filename, Config config, ReaderList readers)
{
// read in data file
using (var msdList = new MSDataList())
{
string msg = String.Format("Opening file \"{0}\" for read...",filename);
if (LogUpdate != null) LogUpdate(msg, _info);
if (StatusUpdate != null) StatusUpdate(msg, ProgressBarStyle.Marquee, _info);
readers.read(filename, msdList);
foreach (var msd in msdList)
{
var outputFilename = config.outputFilename(filename, msd);
if (filename == outputFilename)
throw new ArgumentException("Output filepath is the same as input filepath");
if (StatusUpdate != null) StatusUpdate("Waiting...", ProgressBarStyle.Marquee, _info);
// only one thread
lock (calculateSHA1Mutex)
{
if (LogUpdate != null) LogUpdate("Calculating SHA1 checksum...", _info);
if (StatusUpdate != null) StatusUpdate("Calculating SHA1 checksum...", ProgressBarStyle.Marquee, _info);
MSDataFile.calculateSHA1Checksums(msd);
}
if (LogUpdate != null) LogUpdate("Processing...", _info);
if (StatusUpdate != null) StatusUpdate("Processing...", ProgressBarStyle.Marquee, _info);
SpectrumListFactory.wrap(msd, config.Filters);
if ((msd.run.spectrumList == null) || msd.run.spectrumList.empty())
{
if ((msd.run.chromatogramList != null) && !msd.run.chromatogramList.empty())
{
msg = "Note: input contains only chromatogram data.";
switch (config.WriteConfig.format)
{
case MSDataFile.Format.Format_MZ5:
case MSDataFile.Format.Format_mzML:
break;
default:
msg += " The selected output format can only represent spectra. Consider using mzML instead.";
break;
}
}
else
msg = "Note: input contains no spectra or chromatogram data.";
if (LogUpdate != null) LogUpdate(msg, _info);
if (StatusUpdate != null) StatusUpdate(msg, ProgressBarStyle.Marquee, _info);
}
if (StatusUpdate != null && msd.run.spectrumList != null)
StatusUpdate(String.Format("Processing ({0} of {1})",
DataGridViewProgressCell.MessageSpecialValue.CurrentValue,
DataGridViewProgressCell.MessageSpecialValue.Maximum),
ProgressBarStyle.Continuous, _info);
// write out the new data file
var ilr = new IterationListenerRegistry();
ilr.addListener(this, 100);
msg = String.Format("Writing \"{0}\"...", outputFilename);
if (LogUpdate != null) LogUpdate(msg, _info);
if (StatusUpdate != null) StatusUpdate(msg, ProgressBarStyle.Marquee, _info);
MSDataFile.write(msd, outputFilename, config.WriteConfig, ilr);
ilr.removeListener(this);
}
}
}
