public void AssignPValue()
{
var callCount = 1;
double pValue = QualityCalculator.AssignPValue(callCount, 100, 20);
Assert.Equal(0.6321, pValue, 4);
//If observed call count is 0, return 1
callCount = 0;
pValue = QualityCalculator.AssignPValue(callCount, 100, 20);
Assert.Equal(1, pValue, 4);
}
public void CallSomaticVariants_AssignPValue()
{
List <int[]> SampleValues = new List <int[]>() //coverage,var calls}
{
new int[] { 100, 0 },
new int[] { 100, 1 },
new int[] { 100, 5 },
new int[] { 200, 10 },
new int[] { 500, 25 },
new int[] { 5000, 250 },
};
List <double[]> ReturnedValues = new List <double[]>(); { }//p,Q
foreach (int[] item in SampleValues)
{
double pValue = QualityCalculator.AssignPValue(item[1], item[0], 20);
double Qscore = MathOperations.PtoQ(pValue);
double FinalQValue = QualityCalculator.AssignPoissonQScore(item[1], item[0], 20, 100);
double[] Result = new double[] { pValue, Qscore, FinalQValue };
ReturnedValues.Add(Result);
}
Assert.Equal(ReturnedValues[0][0], 1, 4);
Assert.Equal(ReturnedValues[0][2], 0, 4);
Assert.Equal(ReturnedValues[1][0], 0.6321, 4);
Assert.Equal(ReturnedValues[1][2], 2, 4);
Assert.Equal(ReturnedValues[2][0], 0.003659, 4);
Assert.Equal(ReturnedValues[2][2], 24, 4);
Assert.Equal(ReturnedValues[3][0], 4.65 * Math.Pow(10, -5), 5);
Assert.Equal(ReturnedValues[3][2], 43, 4);
Assert.Equal(ReturnedValues[4][0], 1.599 * Math.Pow(10, -10), 10);
Assert.Equal(ReturnedValues[4][2], 98, 4);
Assert.Equal(ReturnedValues[5][0], 0.0, 10);
Assert.Equal(ReturnedValues[5][2], 100, 4);
}
