public PromoterProprieties getProprieties()
{
PromoterProprieties proprieties = new PromoterProprieties();
proprieties.name = _promoterName;
proprieties.beta = _productionMax;
proprieties.terminatorFactor = _terminatorFactor;
proprieties.formula = _formula;
proprieties.products = new LinkedList<Product>(_products);
proprieties.energyCost = 0;
return proprieties;
}
private float _terminatorFactor; //! Determine the fiability of the terminator (0-1 wich correspond to 0% to 100%)
#endregion Fields
#region Methods
public static IReaction buildPromoterFromProps(PromoterProprieties props)
{
PromoterParser parser = new PromoterParser();
Promoter reaction = new Promoter();
reaction.setName(props.name);
reaction.setBeta(props.beta);
reaction.setTerminatorFactor(props.terminatorFactor);
TreeNode<PromoterNodeData> formula = parser.Parse(props.formula);
reaction.setFormula(formula);
Product newProd;
foreach (Product p in props.products)
{
newProd = new Product(p);
reaction.addProduct(newProd);
}
return reaction;
}
public PromoterProprieties getPromoterReaction(ExpressionModule em, int id)
{
PromoterProprieties prom = new PromoterProprieties();
LinkedList<BioBrick> bricks = em.getBioBricks();
prom.name = _name + id;
PromoterBrick p = bricks.First.Value as PromoterBrick;
prom.formula = p.getFormula();
prom.beta = p.getBeta();
bricks.RemoveFirst();
prom.products = getProductsFromBiobricks(bricks);
TerminatorBrick tb = bricks.First.Value as TerminatorBrick;
prom.terminatorFactor = tb.getTerminatorFactor();
bricks.RemoveFirst();
prom.energyCost = getSize();
return prom;
}
