public RpartSimple(Form parent, Settings set, ResultWindow results, string fileName = null)
{
InitializeComponent();
this.parent = parent;
dialog = folderBrowserDialog1;
if (set.mode == INPUTMODE.USER_DEFINED)
{
dialog = openFileDialog1;
label1.Text = "Choose user defined file with profiles";
}
this.Location = parent.Location;
this.set = set;
if (fileName != null)
{
opt.ReadOptionFile(fileName);
SetProfileOptions();
}
this.results = results;
if (opt.hash.profileName != null)
{
tree.LoadProfiles(opt.hash.profileName);
label9.Text = tree.GetStringActiveProfiles();
}
}
private void toolLoad_Click(object sender, EventArgs e)
{
DialogResult res;
if (filter == filterOPT.SIMILARITY)
{
openFileDialog1.Filter = "Profiles file (*.profiles)|*.profiles";
}
else
{
openFileDialog1.Filter = "Profiles file (*distance.profile)|*distance.profile";
}
string dir = Path.GetDirectoryName(System.Reflection.Assembly.GetExecutingAssembly().Location);
if (Directory.Exists(dir + Path.DirectorySeparatorChar + "profiles"))
{
dir = dir + Path.DirectorySeparatorChar + "profiles";
}
openFileDialog1.InitialDirectory = dir;
res = openFileDialog1.ShowDialog();
if (res == DialogResult.OK)
{
fileName = openFileDialog1.FileName;
treeProfiles.LoadProfiles(fileName);
this.Text = fileName;
ShowTree();
}
}
private string LabelActiveProfiles(string fileName)
{
string outStr = "";
ProfileTree tree = new ProfileTree();
try
{
tree.LoadProfiles(fileName);
}
catch (Exception)
{
label2.Text = "";
return(null);
}
inputMode = tree.GetModes();
List <profileNode> active = tree.GetActiveProfiles();
outStr = "Active profiles: ";
if (active != null)
{
for (int i = 0; i < active.Count; i++)
{
outStr += active[i].profName;
if (i < active.Count - 1)
{
outStr += ", ";
}
}
}
return(outStr);
}
public ProfileForm(string fileName, string alignFile, filterOPT filter)
{
InitializeComponent();
if (fileName == null || fileName.Length == 0)
{
this.Text = "Profile not defined";
}
else
{
this.Text = fileName;
this.fileName = fileName;
}
this.filter = filter;
//profilesView.DrawMode = TreeViewDrawMode.OwnerDrawText;
treeProfiles = new ProfileTree();
if (fileName != null && fileName.Length > 0)
{
if (File.Exists(fileName))
{
treeProfiles.LoadProfiles(fileName);
}
}
ShowTree();
//profilesView.
}
public void Prepare(List<KeyValuePair<string,string>> profilesStr,string profName,string profFile)
{
r = new ProfileTree();
r.LoadProfiles(profFile);
foreach(var item in profilesStr)
{
List<string> aux = new List<string>(item.Value.Length);
for (int i = 0; i < item.Value.Length; i++)
aux.Add(item.Value[i].ToString());
r.AddItemsCombineStates(item.Key,aux);
}
}
void SetProfileOptions()
{
if (set.mode == INPUTMODE.USER_DEFINED)
{
if (opt.profileFiles.Count > 0)
{
textBox1.Text = opt.profileFiles[0];
}
}
else
if (opt.dataDir.Count > 0)
{
textBox1.Text = opt.dataDir[0];
}
opt.clusterAlgorithm.Clear();
opt.clusterAlgorithm.Add(ClusterAlgorithm.uQlustTree);
label3.Text = opt.hash.profileName;
relevantC.Value = opt.hash.relClusters;
distanceControl1.distDef = opt.hierarchical.distance;
distanceControl1.profileName = opt.hierarchical.hammingProfile;
if (opt.hash.combine)
{
radioButton1.Checked = true;
}
else
{
Hash.Checked = true;
}
switch (set.mode)
{
case INPUTMODE.USER_DEFINED:
distanceControl1.HideRmsdLike = true;
distanceControl1.distDef = DistanceMeasures.COSINE;
break;
case INPUTMODE.PROTEIN:
case INPUTMODE.RNA:
distanceControl1.HideCosine = true;
break;
}
if (opt.hash.profileName != null)
{
tree.LoadProfiles(opt.hash.profileName);
label9.Text = tree.GetStringActiveProfiles();
}
}
public ProfileForm(string fileName,string alignFile,filterOPT filter)
{
InitializeComponent();
if (fileName == null || fileName.Length == 0)
this.Text = "Profile not defined";
else
{
this.Text = fileName;
this.fileName = fileName;
}
this.filter = filter;
//profilesView.DrawMode = TreeViewDrawMode.OwnerDrawText;
treeProfiles = new ProfileTree();
if(fileName!=null && fileName.Length>0)
if(File.Exists(fileName))
treeProfiles.LoadProfiles(fileName);
ShowTree();
//profilesView.
}
public ProfileForm(string fileName, string alignFile, filterOPT filter)
{
InitializeComponent();
if (fileName == null || fileName.Length == 0)
{
this.Text = "Profile not defined";
}
else
{
this.Text = fileName;
this.fileName = fileName;
}
this.filter = filter;
//profilesView.DrawMode = TreeViewDrawMode.OwnerDrawText;
treeProfiles = new ProfileTree();
if (fileName != null && fileName.Length > 0)
{
if (File.Exists(fileName))
{
treeProfiles.LoadProfiles(fileName);
if (treeProfiles.combine == profileCombination.JOIN_STATES)
{
toolStripButton1.Enabled = false;
toolStripButton4.Enabled = true;
}
else
{
toolStripButton1.Enabled = true;
toolStripButton4.Enabled = false;
}
}
}
ShowTree();
//profilesView.
}
private string LabelActiveProfiles(string fileName)
{
string outStr = "";
ProfileTree tree = new ProfileTree();
if (fileName.Length > 0)
tree.LoadProfiles(fileName);
else
return null;
inputMode = tree.GetModes();
List<profileNode> active = tree.GetActiveProfiles();
outStr = "Active profiles: ";
if(active!=null)
for (int i = 0; i < active.Count; i++)
{
outStr += active[i].profName;
if (i < active.Count - 1)
outStr += ", ";
}
return outStr;
}
private string LabelActiveProfiles(string fileName)
{
string outStr = "";
ProfileTree tree = new ProfileTree();
try
{
tree.LoadProfiles(fileName);
}
catch(Exception ex)
{
label2.Text = "";
}
inputMode = tree.GetModes();
List<profileNode> active = tree.GetActiveProfiles();
outStr = "Active profiles: ";
if(active!=null)
for (int i = 0; i < active.Count; i++)
{
outStr += active[i].profName;
if (i < active.Count - 1)
outStr += ", ";
}
return outStr;
}