private void CreateRibbons(List <Dictionary <string, Vector3> > residueDicts, List <int> sslist, List <int> handedlist)
{
//List<Dictionary<string, Vector3>> residueDicts = Molecule.Model.MoleculeModel.residueDictionaries;
// For line ribbons
List <Vector3> vertices0 = new List <Vector3>();
List <Vector3> vertices1 = new List <Vector3>();
List <Vector3> vertices2 = new List <Vector3>();
// For flat ribbons
List <Vector3> vertices = new List <Vector3>();
List <Color32> colors = new List <Color32>();
List <Vector3> normals = new List <Vector3>();
switch (RIBBON_DETAIL)
{
case 1:
uspacing = 10;
break;
case 2:
uspacing = 5;
break;
case 3:
uspacing = 2;
break;
default:
uspacing = 1;
break;
}
flipTestV = new Vector3();
splineSide1 = new BSpline(false);
splineCenter = new BSpline(false);
splineSide2 = new BSpline(false);
int[] ss = new int[residueDicts.Count];
int[] handedness = new int[residueDicts.Count];
List <int> ssglic = new List <int> (); // Specific to Glic for now (split differents domains)
int nbRes = residueDicts.Count;
int colorOffset = nbRes - 1;
if (createss) // if ss informations in the pdb file
{
ss = sslist.ToArray();
handedness = handedlist.ToArray();
}
else
{
CalculateSecondaryStructures(residueDicts, ss, handedness);
nbRes = residueDicts.Count;
// Colors and structures are misaligned without this offset. Not sure why.
// Keeping identical offsets?
colorOffset = nbRes - 1;
//int arrowOffset = nbRes - 1;
//colorOffset = 0;
for (int i = 1; i < nbRes - 1; i++)
{
if (ss [i - 1] == HELIX && ss [i + 1] == HELIX)
{
ss [i] = HELIX;
}
if (ss [i - 1] == STRAND && ss [i + 1] == STRAND)
{
ss [i] = STRAND;
}
}
}
InitCol(); //Initialization Dictionary of colors
List <int> triangles = new List <int>();
vIndex = 0;
bool isArrow;
for (int i = 0; i < nbRes; i++)
{
ConstructControlPoints(residueDicts, i, ss[i], handedness[i]);
int colorIndex = (i + colorOffset) % nbRes;
//int arrowIndex = (i+arrowOffset) % nbRes;
isArrow = (ss[colorIndex] == STRAND && ((colorIndex + 1 == nbRes) || (ss[colorIndex + 1] != STRAND)));
if (RENDER_MODE == 0)
{
GenerateSpline(0, vertices0);
GenerateSpline(1, vertices1);
GenerateSpline(2, vertices2);
}
else
{
if (isArrow && ARROW_WIDTH > 0f)
{
GenerateArrowRibbon(vertices, normals, triangles);
}
else
{
GenerateFlatRibbon(vertices, normals, triangles);
}
Color32 color;
if (UI.UIData.ssColChain)
{
color = GetColorChain(currentchain);
if (i > 185 && UI.UIData.ssDivCol)
{
color.g += 100;
color.b += 100;
}
}
else
{
switch (ss[colorIndex])
{
case HELIX:
color = HELIX_COLOR.color;
break;
case STRAND:
color = STRAND_COLOR.color;
break;
default:
color = COIL_COLOR.color;
break;
}
}
for (int j = 0; j < 320; j++)
{
colors.Add(color);
}
ssglic.Add(ss[i]);
}
}
if (RENDER_MODE == 0)
{
// Forget that for now
}
else
{
PostProcessing.GenerateMeshes(vertices, normals, triangles, colors, ss);
}
} // End of CreateRibbons
private void CreateRibbons(List <Dictionary <string, Vector3> > residueDicts, List <int> sslist, List <int> handedlist)
{
//List<Dictionary<string, Vector3>> residueDicts = Molecule.Model.MoleculeModel.residueDictionaries;
// For line ribbons
List <Vector3> vertices0 = new List <Vector3>();
List <Vector3> vertices1 = new List <Vector3>();
List <Vector3> vertices2 = new List <Vector3>();
// For flat ribbons
List <Vector3> vertices = new List <Vector3>();
List <Color32> colors = new List <Color32>();
List <Vector3> normals = new List <Vector3>();
switch (RIBBON_DETAIL)
{
case 1:
uspacing = 10;
break;
case 2:
uspacing = 5;
break;
case 3:
uspacing = 2;
break;
default:
uspacing = 1;
break;
}
flipTestV = new Vector3();
splineSide1 = new BSpline(false);
splineCenter = new BSpline(false);
splineSide2 = new BSpline(false);
int[] ss = new int[residueDicts.Count];
int[] handedness = new int[residueDicts.Count];
List <int> ssglic = new List <int> (); // Specific to Glic for now (split differents domains)
int nbRes = residueDicts.Count;
int colorOffset = nbRes - 1;
Debug.Log("ss.Length: " + ss.Length);
if (createss) // if ss informations in the pdb file
{
ss = sslist.ToArray();
Debug.Log("ss.Length: " + ss.Length);
handedness = handedlist.ToArray();
}
else
{
CalculateSecondaryStructures(residueDicts, ss, handedness);
nbRes = residueDicts.Count;
// Colors and structures are misaligned without this offset. Not sure why.
// Keeping identical offsets?
colorOffset = nbRes - 1;
//int arrowOffset = nbRes - 1;
//colorOffset = 0;
for (int i = 1; i < nbRes - 1; i++)
{
if (ss [i - 1] == HELIX && ss [i + 1] == HELIX)
{
ss [i] = HELIX;
}
if (ss [i - 1] == STRAND && ss [i + 1] == STRAND)
{
ss [i] = STRAND;
}
}
}
InitCol(); //Initialization Dictionary of colors
List <int> triangles = new List <int>();
vIndex = 0;
bool isArrow;
for (int i = 0; i < nbRes; i++) // i == index of current Residue.
{
Residue r = MoleculeModel.residueSeq[i];
ConstructControlPoints(residueDicts, i, ss[i], handedness[i]);
int colorIndex = (i + colorOffset) % nbRes;
//int arrowIndex = (i+arrowOffset) % nbRes;
Debug.Log("ss.Length: " + ss.Length + " colorIndex: " + colorIndex + " nbRes: " + nbRes + " residueDicts.Count: " + residueDicts.Count);
isArrow = (ss[colorIndex] == STRAND && ((colorIndex + 1 == nbRes))); //|| (ss[colorIndex+1] != STRAND)
if (RENDER_MODE == 0)
{
Debug.Log("RENDER_MODE == 0");
GenerateSpline(0, vertices0);
GenerateSpline(1, vertices1);
GenerateSpline(2, vertices2);
}
else //vertices, normals, triangles are added.
{
Debug.Log("RENDER_MODE != 0");
int vBefore = vertices.Count;
int nBefore = normals.Count;
int tBefore = triangles.Count;
if (isArrow && ARROW_WIDTH > 0f)
{
Debug.Log("before vertices.Count: " + vertices.Count);
GenerateArrowRibbon(vertices, normals, triangles);
Debug.Log("after vertices.Count: " + vertices.Count);
}
else
{
Debug.Log("before vertices.Count: " + vertices.Count);
GenerateFlatRibbon(vertices, normals, triangles);
Debug.Log("after vertices.Count: " + vertices.Count);
}
int vAfter = vertices.Count;
int nAfter = normals.Count;
int tAfter = triangles.Count;
r.vertices = new List <int>(new int[] { vBefore, vAfter - 1 });
r.normals = new List <int>(new int[] { nBefore, nAfter - 1 });
r.triangles = new List <int>(new int[] { tBefore, tAfter - 1 });
r.meshIndices = new List <int>();
Color32 color;
if (UI.UIData.ssColChain)
{
color = GetColorChain(currentchain);
if (i > 185 && UI.UIData.ssDivCol)
{
color.g += 100;
color.b += 100;
}
}
else
{
switch (ss[colorIndex])
{
case HELIX:
color = HELIX_COLOR.color;
break;
case STRAND:
color = STRAND_COLOR.color;
break;
default:
color = COIL_COLOR.color;
break;
}
}
r.colors = new List <Color32>();
for (int j = 0; j < 320; j++)
{
colors.Add(color);
r.colors.Add(color);
}
ssglic.Add(ss[i]);
}
MoleculeModel.residueSeq[i] = r; //@imyjimmy
} //end for loop
if (RENDER_MODE == 0)
{
// Forget that for now
}
else
{
postprocessing.GenerateMeshes(vertices, normals, triangles, colors, ss, MoleculeModel.residueSeq);
}
} // End of CreateRibbons