C# (CSharp) PileupItemReadDepthFilter Beispiele

Beispiel #1

Datei: ValidationParser.cs Projekt: shengqh/CQS.Core

 public ValidationParser(PileupProcessorOptions options, MpileupResult result)
 {
   _options = options;
   _parser = options.GetPileupItemParser(false);
   _rdFilter = new PileupItemReadDepthFilter(options.MinimumReadDepth, options.MinimumBaseQuality);
   _normalTest = new PileupItemNormalTest(options.MaximumPercentageOfMinorAlleleInNormal);
   _tumorTest = new PileupItemTumorTest(options.MinimumReadsOfMinorAlleleInTumor, options.MinimumPercentageOfMinorAlleleInTumor);
   _result = result;
 }

Beispiel #2

Datei: ValidationParser.cs Projekt: biosharp-dotnet-labs/CQS.Core

 public ValidationParser(PileupProcessorOptions options, MpileupResult result)
 {
     _options    = options;
     _parser     = options.GetPileupItemParser(false);
     _rdFilter   = new PileupItemReadDepthFilter(options.MinimumReadDepth, options.MinimumBaseQuality);
     _normalTest = new PileupItemNormalTest(options.MaximumPercentageOfMinorAlleleInNormal);
     _tumorTest  = new PileupItemTumorTest(options.MinimumReadsOfMinorAlleleInTumor, options.MinimumPercentageOfMinorAlleleInTumor);
     _result     = result;
 }