public void DebugPfamLigandInteractions()
{
DomainInterfaceBuilder.InitializeThread();
/* LigandComPfamHmm comPfamHmm = new LigandComPfamHmm();
* string pfamId = "T-box";
* comPfamHmm.CalculatePfamLigandComHmmPos (pfamId);
*
* PfamLigandClusterHmm ligandClusters = new PfamLigandClusterHmm();
* // pfamId = "1-cysPrx_C";
* ligandClusters.ClusterPfamLigandsByPfamHmm(pfamId, false);
* // ligandClusters.ClusterPfamLigandsByPfamHmm();
*
* PfamDomainFileCompress domainFileCompress = new PfamDomainFileCompress();
* // domainFileCompress.CompressPfamDomainFiles();
* // pfamId = "40S_S4_C"; // 40S_S4_C
* domainFileCompress.CompilePfamDomainWithLigandFiles(pfamId, null);*/
PfamLigandFileCompress ligandFileCompress = new PfamLigandFileCompress();
string ligandId = "DNA";
ligandFileCompress.CompressDomainDnaRnaFiles(ligandId);
ligandFileCompress.CompressLigandPfamDomainFilesFromPdb();
}
