private static void NonzeroFilterGroup(int minValids, bool percentage, IMatrixData mdata, Parameters param,
bool oneGroup, double threshold, double threshold2, FilteringMode filterMode, IList <string[]> groupCol
)
{
List <int> valids = new List <int>();
List <int> notvalids = new List <int>();
string[] groupVals = ArrayUtils.UniqueValuesPreserveOrder(groupCol);
Array.Sort(groupVals);
int[][] groupInds = CalcGroupInds(groupVals, groupCol);
for (int i = 0; i < mdata.RowCount; i++)
{
int[] counts = new int[groupVals.Length];
int[] totals = new int[groupVals.Length];
for (int j = 0; j < groupInds.Length; j++)
{
for (int k = 0; k < groupInds[j].Length; k++)
{
if (groupInds[j][k] >= 0)
{
totals[groupInds[j][k]]++;
}
}
if (PerseusPluginUtils.IsValid(mdata.Values.Get(i, j), threshold, threshold2, filterMode))
{
for (int k = 0; k < groupInds[j].Length; k++)
{
if (groupInds[j][k] >= 0)
{
counts[groupInds[j][k]]++;
}
}
}
}
bool[] groupValid = new bool[counts.Length];
for (int j = 0; j < groupValid.Length; j++)
{
groupValid[j] = PerseusPluginUtils.Valid(counts[j], minValids, percentage, totals[j]);
}
if (oneGroup ? ArrayUtils.Or(groupValid) : ArrayUtils.And(groupValid))
{
valids.Add(i);
}
else
{
notvalids.Add(i);
}
}
PerseusPluginUtils.FilterRowsNew(mdata, param, valids.ToArray());
}
public void ProcessData(IMatrixData mdata, Parameters param, ref IMatrixData[] supplTables,
ref IDocumentData[] documents, ProcessInfo processInfo)
{
const bool rows = true;
int minValids = PerseusPluginUtils.GetMinValids(param, out bool percentage);
ParameterWithSubParams <int> modeParam = param.GetParamWithSubParams <int>("Mode");
int modeInd = modeParam.Value;
if (modeInd != 0 && mdata.CategoryRowNames.Count == 0)
{
processInfo.ErrString = "No grouping is defined.";
return;
}
PerseusPluginUtils.ReadValuesShouldBeParams(param, out FilteringMode filterMode, out double threshold, out double threshold2);
if (modeInd != 0)
{
int gind = modeParam.GetSubParameters().GetParam <int>("Grouping").Value;
string[][] groupCol = mdata.GetCategoryRowAt(gind);
if (param.GetParam <int>("Filter mode").Value == 2)
{
//discarded
List <int> valids = new List <int>();
List <int> notvalids = new List <int>();
string[] groupVals = ArrayUtils.UniqueValuesPreserveOrder(groupCol);
Array.Sort(groupVals);
int[][] groupInds = CalcGroupInds(groupVals, groupCol);
for (int i = 0; i < mdata.RowCount; i++)
{
int[] counts = new int[groupVals.Length];
int[] totals = new int[groupVals.Length];
for (int j = 0; j < groupInds.Length; j++)
{
for (int k = 0; k < groupInds[j].Length; k++)
{
if (groupInds[j][k] >= 0)
{
totals[groupInds[j][k]]++;
}
}
if (PerseusPluginUtils.IsValid(mdata.Values.Get(i, j), threshold, threshold2, filterMode))
{
for (int k = 0; k < groupInds[j].Length; k++)
{
if (groupInds[j][k] >= 0)
{
counts[groupInds[j][k]]++;
}
}
}
}
bool[] groupValid = new bool[counts.Length];
for (int j = 0; j < groupValid.Length; j++)
{
groupValid[j] = PerseusPluginUtils.Valid(counts[j], minValids, percentage, totals[j]);
}
if (modeInd == 2 ? ArrayUtils.Or(groupValid) : ArrayUtils.And(groupValid))
{
valids.Add(i);
}
else
{
notvalids.Add(i);
}
}
supplTables = new[] { PerseusPluginUtils.CreateSupplTabSplit(mdata, notvalids.ToArray()) };
}
NonzeroFilterGroup(minValids, percentage, mdata, param, modeInd == 2, threshold, threshold2, filterMode, groupCol);
}
else
{
if (param.GetParam <int>("Filter mode").Value == 2)
{
supplTables = new[] { PerseusPluginUtils.NonzeroFilter1Split(rows, minValids, percentage, mdata, param, threshold, threshold2, filterMode) };
}
PerseusPluginUtils.NonzeroFilter1(rows, minValids, percentage, mdata, param, threshold, threshold2, filterMode);
}
}
