/// <summary>
/// Create the reporting pathologist from information in the HL7 V2 message.
/// </summary>
/// <param name="message">The HL7 V2 message.</param>
/// <returns></returns>
internal static IParticipationReportingPathologist CreateReportingPathologist(HL7GenericMessage message)
{
var nameCn = message.Order.First().Observation.First().ObservationsReportID.PrincipalResultInterpreter.name;
var reportingPathologist = PathologyResultReport.CreateReportingPathologist();
// Document reportingPathologist > Participant
reportingPathologist.Participant = PathologyResultReport.CreateParticipantForReportingPathologist();
// Participation Period
reportingPathologist.ParticipationEndTime = GetResultsReportStatusChange(message);
var person = BaseCDAModel.CreatePersonWithOrganisation();
// Document reportingPathologist > Participant > Person or Organisation or Device > Person > Person Name
person.PersonNames = new List <IPersonName> {
GetPersonNameFromCn(nameCn)
};
// Document reportingPathologist > Participant > Entity Identifier
person.Identifiers = new List <Identifier>
{
BaseCDAModel.CreateHealthIdentifier(HealthIdentifierType.HPII, nameCn.IDnumberST)
};
reportingPathologist.Participant.Person = person;
return(reportingPathologist);
}
/// <summary>
/// Create the pathology test result from information in the HL7 V2 message.
/// </summary>
/// <param name="obrSegment">OBR segment.</param>
/// <returns>PathologyTestResult</returns>
internal static PathologyTestResult CreatePathologyTestResult(OBR obrSegment)
{
PathologyTestResult testResult = PathologyResultReport.CreatePathologyTestResult();
// Test Result Name
testResult.TestResultName = GetTestResultName(obrSegment.UniversalServiceID);
// Pathology Discipline
DiagnosticService diagnosticService;
if (!EnumHelper.TryGetEnumValue <DiagnosticService, NameAttribute>(attribute => attribute.Code == obrSegment.DiagnosticServSectID, out diagnosticService))
{
diagnosticService = DiagnosticService.Laboratory;
}
testResult.PathologyDiscipline = diagnosticService;
// Report Status
Hl7V3ResultStatus hl7V3ResultStatus;
if (!EnumHelper.TryGetEnumValue <Hl7V3ResultStatus, NameAttribute>(attribute => attribute.Code == obrSegment.ResultStatus, out hl7V3ResultStatus))
{
throw new ArgumentException("No matching Hl7V3ResultStatus value found");
}
testResult.OverallTestResultStatus = BaseCDAModel.CreateResultStatus(hl7V3ResultStatus);
// Test Specimen Detail
testResult.TestSpecimenDetail = PathologyResultReport.CreateTestSpecimenDetail();
testResult.TestSpecimenDetail.CollectionDateTime = new ISO8601DateTime(obrSegment.ObservationDateTime.TimestampValue.Value);
// Pathology Test Result Date Time
testResult.ObservationDateTime = new ISO8601DateTime(obrSegment.ObservationDateTime.TimestampValue.Value);
return(testResult);
}
/// <summary>
/// Creates a pathology test result.
/// </summary>
/// <returns>PathologyTestResult</returns>
private static TestSpecimenDetail CreateTestSpecimenDetail()
{
var testSpecimenDetail = PathologyResultReport.CreateTestSpecimenDetail();
// Date and Time Of Collection
testSpecimenDetail.CollectionDateTime = new ISO8601DateTime(DateTime.Parse("27 Feb 2007 13:00"));
return(testSpecimenDetail);
}
/// <summary>
/// Generates an XML document from the pathology report model.
/// </summary>
/// <param name="pathologyResultReport">HL7 pathology message model.</param>
/// <returns>Pathology XML document.</returns>
/// <exception cref="ArgumentNullException">pathologyResultReport</exception>
public XmlDocument Generate(PathologyResultReport pathologyResultReport)
{
if (pathologyResultReport == null)
{
throw new ArgumentNullException(nameof(pathologyResultReport));
}
return(CDAGenerator.GeneratePathologyResultReport(pathologyResultReport));
}
/// <summary>
/// Creates a Related Document.
/// </summary>
/// <returns>RelatedDocument</returns>
public static RelatedDocument CreateRelatedDocument(Boolean mandatorySectionsOnly)
{
RelatedDocument relatedDocument = PathologyResultReport.CreateRelatedDocument();
// Pathology PDF
var attachmentPdf = BaseCDAModel.CreateExternalData();
attachmentPdf.ExternalDataMediaType = MediaType.PDF;
attachmentPdf.Path = AttachmentFileNameAndPath;
relatedDocument.ExaminationResultRepresentation = attachmentPdf;
// Document Provenance
relatedDocument.DocumentDetails = CreateDocumentProvenance(mandatorySectionsOnly);
return(relatedDocument);
}
/// <summary>
/// Fill in additional required information in the PathologyResultReport.
/// </summary>
/// <param name="report">The PathologyResultReport to complete.</param>
/// <param name="metadata">Metadata information.</param>
internal static void FillInAdditionalMetadata(PathologyResultReport report, PathologyMetadata metadata)
{
report.SCSContext.OrderDetails.RequesterOrderIdentifier = metadata.RequesterOrderIdentifier;
report.SCSContent.RelatedDocument.DocumentDetails.ReportIdentifier = metadata.ReportIdentifier;
// Author
report.SCSContext.Author.Participant.Person.Organisation = BaseCDAModel.CreateEmploymentOrganisation();
report.SCSContext.Author.Participant.Person.Organisation.Identifiers = new List <Identifier>
{
BaseCDAModel.CreateHealthIdentifier(HealthIdentifierType.HPIO, metadata.AuthorOrganisationHpio)
};
// Reporting pathologist
report.SCSContext.ReportingPathologist.Role = PathologyResultReport.CreateRole(metadata.ReportingPathologist.Role, CodingSystem.ANZSCO);
report.SCSContext.ReportingPathologist.Participant.Addresses = metadata.ReportingPathologist.Address;
report.SCSContext.ReportingPathologist.Participant.ElectronicCommunicationDetails = metadata.ReportingPathologist.ContactDetails;
report.SCSContext.ReportingPathologist.Participant.Person.Organisation = BaseCDAModel.CreateEmploymentOrganisation();
report.SCSContext.ReportingPathologist.Participant.Person.Organisation.Identifiers = new List <Identifier> {
BaseCDAModel.CreateHealthIdentifier(HealthIdentifierType.HPIO, metadata.ReportingPathologist.OrganisationHpio)
};
}
/// <summary>
/// Create the related document from information in the HL7 V2 message.
/// </summary>
/// <param name="message">The HL7 V2 message.</param>
/// <param name="reportAttachment">Report attachment.</param>
/// <returns>RelatedDocument</returns>
internal static RelatedDocument CreateRelatedDocument(HL7GenericMessage message, ReportAttachment reportAttachment)
{
RelatedDocument relatedDocument = PathologyResultReport.CreateRelatedDocument();
// Pathology PDF
var attachmentPdf = BaseCDAModel.CreateExternalData();
attachmentPdf.ExternalDataMediaType = reportAttachment.MediaType;
attachmentPdf.ByteArrayInput = new ByteArrayInput
{
ByteArray = reportAttachment.Data,
FileName = reportAttachment.Filename
};
relatedDocument.ExaminationResultRepresentation = attachmentPdf;
DocumentDetails documentDetails = BaseCDAModel.CreateDocumentDetails();
// Report Date
documentDetails.ReportDate = GetReportDate(message);
// Result Status
string status = GetRelatedDocumentStatus(message);
Hl7V3ResultStatus resultStatus;
if (!EnumHelper.TryGetEnumValue <Hl7V3ResultStatus, NameAttribute>(attribute => attribute.Code == status, out resultStatus))
{
throw new ArgumentException("No matching Hl7V3ResultStatus value found");
}
documentDetails.ReportStatus = BaseCDAModel.CreateResultStatus(resultStatus);
// Report Name
documentDetails.ReportDescription = GetReportName(message);
relatedDocument.DocumentDetails = documentDetails;
return(relatedDocument);
}
/// <summary>
/// Creates a pathology test result.
/// </summary>
/// <returns>PathologyTestResult</returns>
private static PathologyTestResult CreatePathologyTestResult(string reportingPathologistName)
{
PathologyTestResult testResult = PathologyResultReport.CreatePathologyTestResult();
// Please note optional field - Note: This field is only displayed in the Narrative
testResult.ReportingPathologistForTestResult = reportingPathologistName;
// Test Result Name
testResult.TestResultName = BaseCDAModel.CreateCodableText("275711006", CodingSystem.SNOMED, "Serum chemistry test");
// Department Code
testResult.PathologyDiscipline = DiagnosticService.Laboratory;
// Department Code
testResult.OverallTestResultStatus = BaseCDAModel.CreateResultStatus(Hl7V3ResultStatus.Preliminary, "Preliminary"); // or BaseCDAModel.CreateResultStatus(Hl7V3ResultStatus.Preliminary)
// Test Specimen Detail
testResult.TestSpecimenDetail = CreateTestSpecimenDetail();
// Pathology Test Result Date Time
testResult.ObservationDateTime = new ISO8601DateTime(DateTime.Parse("27 Feb 2007 13:00"));
return(testResult);
}
/// <summary>
/// Creates and Hydrates a IParticipationReceivingLaboratory
///
/// Note: the data used within this method is intended as a guide and should be replaced.
/// </summary>
/// <returns>IParticipationReceivingLaboratory</returns>
private static IParticipationReportingPathologist CreateReportingPathologist(Boolean mandatoryOnly)
{
// Receiving Laboratory
var reportingPathologist = PathologyResultReport.CreateReportingPathologist();
// Document reportingPathologist > Participant
reportingPathologist.Participant = PathologyResultReport.CreateParticipantForReportingPathologist();
var person = BaseCDAModel.CreatePersonWithOrganisation();
// Participation Period
reportingPathologist.ParticipationEndTime = new ISO8601DateTime(DateTime.Now);
// Document reportingPathologist > Role
reportingPathologist.Role = PathologyResultReport.CreateRole(Occupation.Pathologist);
// Document reportingPathologist > Participant > Person or Organisation or Device > Person > Person Name
var name = BaseCDAModel.CreatePersonName();
name.FamilyName = "Doctor";
person.PersonNames = new List <IPersonName> {
name
};
// Document reportingPathologist > Participant > Address
var address1 = BaseCDAModel.CreateAddress();
address1.AddressPurpose = AddressPurpose.Business;
address1.AustralianAddress = BaseCDAModel.CreateAustralianAddress();
var address2 = BaseCDAModel.CreateAddress();
address2.AddressPurpose = AddressPurpose.Business;
address2.AustralianAddress = BaseCDAModel.CreateAustralianAddress();
var addressList = new List <IAddress> {
address1, address2
};
reportingPathologist.Participant.Addresses = addressList;
// Document reportingPathologist > Participant > Electronic Communication Detail
var coms1 = BaseCDAModel.CreateElectronicCommunicationDetail(
"0345754566",
ElectronicCommunicationMedium.Telephone,
ElectronicCommunicationUsage.WorkPlace);
var coms2 = BaseCDAModel.CreateElectronicCommunicationDetail(
"*****@*****.**",
ElectronicCommunicationMedium.Email,
ElectronicCommunicationUsage.WorkPlace);
reportingPathologist.Participant.ElectronicCommunicationDetails = new List <ElectronicCommunicationDetail> {
coms1, coms2
};
// Participant > Entitlement
var entitlement = BaseCDAModel.CreateEntitlement();
var code = BaseCDAModel.CreateCodableText("11", CodingSystem.NCTISEntitlementTypeValues, "Medicare Pharmacy Approval Number", null, null);
entitlement.Id = BaseCDAModel.CreateIdentifier("Pharmacy",
null,
"1234567892",
"1.2.36.174030967.1.3.2.1",
code);
entitlement.Type = EntitlementType.MedicarePharmacyApprovalNumber;
entitlement.ValidityDuration = BaseCDAModel.CreateInterval("1", TimeUnitOfMeasure.Year);
reportingPathologist.Participant.Entitlements = new List <Entitlement> {
entitlement, entitlement
};
person.Organisation = BaseCDAModel.CreateEmploymentOrganisation();
person.Organisation.Name = "Hay Bill Hospital";
person.Organisation.NameUsage = OrganisationNameUsage.Other;
person.Organisation.Department = "Some department service provider";
person.Organisation.EmploymentType = BaseCDAModel.CreateCodableText(null, null, null, "Casual", null);
person.Organisation.Occupation = PathologyResultReport.CreateRole(Occupation.GeneralMedicalPractitioner);
person.Organisation.PositionInOrganisation = BaseCDAModel.CreateCodableText(null, null, null, "Manager", null);
person.Organisation.Identifiers = new List <Identifier> {
BaseCDAModel.CreateHealthIdentifier(HealthIdentifierType.HPIO, "8003620833333789"),
BaseCDAModel.CreateIdentifier("NATA", null, "3715", "1.2.36.1.2001.1005.12", BaseCDAModel.CreateCodableText("XX", CodingSystem.HL7IdentifierType, "Organization identifier"))
};
// Document reportingPathologist > Participant > Entity Identifier
person.Identifiers = new List <Identifier> {
BaseCDAModel.CreateHealthIdentifier(HealthIdentifierType.HPII, "8003615833334118"),
};
if (!mandatoryOnly)
{
name.GivenNames = new List <string> {
"Good"
};
name.Titles = new List <string> {
"Doctor"
};
name.NameUsages = new List <NameUsage> {
NameUsage.Legal
};
address1.AustralianAddress.UnstructuredAddressLines = new List <string> {
"1 Clinician Street"
};
address1.AustralianAddress.SuburbTownLocality = "Nehtaville";
address1.AustralianAddress.State = AustralianState.QLD;
address1.AustralianAddress.PostCode = "5555";
address1.AustralianAddress.DeliveryPointId = 32568931;
address2.AustralianAddress.UnstructuredAddressLines = new List <string> {
"2 Clinician Street"
};
address2.AustralianAddress.SuburbTownLocality = "Nehtaville";
address2.AustralianAddress.State = AustralianState.QLD;
address2.AustralianAddress.PostCode = "5555";
address2.AustralianAddress.DeliveryPointId = 32568931;
// Qualifications
reportingPathologist.Participant.Qualifications = "FRACGP";
}
reportingPathologist.Participant.Person = person;
return(reportingPathologist);
}
/// <summary>
/// This sample populates both the mandatory and optional Sections / Entries depending on the
/// mandatorySectionsOnly Boolean
/// </summary>
internal static PathologyResultReport PopulatedPathologyResultReport(Boolean mandatorySectionsOnly)
{
var pathologyResultReport = PathologyResultReport.CreatePathologyResultReport();
// Include Logo
pathologyResultReport.IncludeLogo = true;
pathologyResultReport.LogoPath = OutputFolderPath;
// Set Creation Time
pathologyResultReport.DocumentCreationTime = new ISO8601DateTime(DateTime.Now);
#region Setup and populate the CDA context model
// Setup and populate the CDA context model
var cdaContext = PathologyResultReport.CreateCDAContext();
// Document Id
cdaContext.DocumentId = BaseCDAModel.CreateIdentifier(BaseCDAModel.CreateOid(), null);
// Set Id
cdaContext.SetId = BaseCDAModel.CreateIdentifier(BaseCDAModel.CreateGuid(), null);
// CDA Context Version
cdaContext.Version = "1";
// Custodian
cdaContext.Custodian = BaseCDAModel.CreateCustodian();
GenericObjectReuseSample.HydrateCustodian(cdaContext.Custodian, "Pathology Queensland", mandatorySectionsOnly);
// Legal Authenticator
cdaContext.LegalAuthenticator = BaseCDAModel.CreateLegalAuthenticator();
GenericObjectReuseSample.HydrateAuthenticator(cdaContext.LegalAuthenticator, mandatorySectionsOnly);
pathologyResultReport.CDAContext = cdaContext;
#endregion
// Setup and Populate the SCS Context model
#region Setup and Populate the SCS Context model
pathologyResultReport.SCSContext = PathologyResultReport.CreateSCSContext();
// Author Health Care Provider
pathologyResultReport.SCSContext.Author = BaseCDAModel.CreateAuthorHealthcareProvider();
GenericObjectReuseSample.HydrateAuthorHealthcareProvider(pathologyResultReport.SCSContext.Author, "Pathology Queensland", mandatorySectionsOnly);
// The Reporting Pathologist
pathologyResultReport.SCSContext.ReportingPathologist = CreateReportingPathologist(mandatorySectionsOnly);
// Order Details
pathologyResultReport.SCSContext.OrderDetails = CreateOrderDetails(mandatorySectionsOnly);
// Subject Of Care
pathologyResultReport.SCSContext.SubjectOfCare = BaseCDAModel.CreateSubjectOfCare();
GenericObjectReuseSample.HydrateSubjectofCare(pathologyResultReport.SCSContext.SubjectOfCare, mandatorySectionsOnly);
#endregion
#region Setup and populate the SCS Content model
// Setup and populate the SCS Content model
pathologyResultReport.SCSContent = PathologyResultReport.CreateSCSContent();
// Pathology Test Result
pathologyResultReport.SCSContent.PathologyTestResult = new List <PathologyTestResult>
{
CreatePathologyTestResult(mandatorySectionsOnly ? null : "DR Arreza Araceli"),
CreatePathologyTestResult(mandatorySectionsOnly ? null : "DR Arshi Lakdawala")
};
// Related Document
pathologyResultReport.SCSContent.RelatedDocument = CreateRelatedDocument(mandatorySectionsOnly);
#endregion
return(pathologyResultReport);
}
public void Process(Spia.PathologyReportModel.Model.PathologyReport Report, string CdaOutputDirectory, string PdfDirectory, byte[] LogoBytes = null)
{
var pathologyResultReport = PathologyResultReport.CreatePathologyResultReport();
// Include Logo
if (LogoBytes != null)
{
pathologyResultReport.IncludeLogo = true;
pathologyResultReport.LogoByte = LogoBytes;
}
else
{
pathologyResultReport.IncludeLogo = false;
}
// Set Creation Time
DateTimeOffset DocumentCreationDateTime = Report.GetOldestReportReleaseDateTime();
pathologyResultReport.DocumentCreationTime = new ISO8601DateTime(DocumentCreationDateTime.DateTime, ISO8601DateTime.Precision.Second, DocumentCreationDateTime.Offset);
#region Setup and populate the CDA context model
// Setup and populate the CDA context model
var cdaContext = PathologyResultReport.CreateCDAContext();
// Document Id
cdaContext.DocumentId = BaseCDAModel.CreateIdentifier(BaseCDAModel.CreateOid(), null);
// Set Id
cdaContext.SetId = BaseCDAModel.CreateIdentifier(BaseCDAModel.CreateGuid(), null);
// CDA Context Version , this needs to increment for each correction to the first report instance
cdaContext.Version = "1";
// Custodian
cdaContext.Custodian = BaseCDAModel.CreateCustodian();
//custodian/assignedCustodian
cdaContext.Custodian.Participant = BaseCDAModel.CreateParticipantCustodian();;
// custodian/assignedCustodian/representedCustodianOrganization
cdaContext.Custodian.Participant.Organisation = BaseCDAModel.CreateOrganisationName();
// custodian/assignedCustodian/representedCustodianOrganization/<Entity Identifier>
cdaContext.Custodian.Participant.Organisation.Identifiers = new List <Identifier>
{
BaseCDAModel.CreateHealthIdentifier(HealthIdentifierType.HPIO, Report.PerformingLaboratory.Hpio.Replace(" ", string.Empty))
};
// custodian/assignedCustodian/representedCustodianOrganization/name
cdaContext.Custodian.Participant.Organisation.Name = Report.PerformingLaboratory.FacilityName;
ElectronicCommunicationDetail PerformingPathologyLabComms = BaseCDAModel.CreateElectronicCommunicationDetail(
Report.PerformingLaboratory.BusinessPhoneNumber,
ElectronicCommunicationMedium.Telephone,
ElectronicCommunicationUsage.WorkPlace);
// custodian/assignedCustodian/representedCustodianOrganization/<Address>
cdaContext.Custodian.Participant.Address = GetCdaAddress(Report.PerformingLaboratory.Address);
// custodian/assignedCustodian/representedCustodianOrganization/<Electronic Communication Detail>
cdaContext.Custodian.Participant.ElectronicCommunicationDetail = PerformingPathologyLabComms;
// Legal Authenticator
cdaContext.LegalAuthenticator = BaseCDAModel.CreateLegalAuthenticator();
// LegalAuthenticator/assignedEntity
cdaContext.LegalAuthenticator.Participant = BaseCDAModel.CreateParticipantForLegalAuthenticator();
// LegalAuthenticator/assignedEntity/assignedPerson
cdaContext.LegalAuthenticator.Participant.Person = BaseCDAModel.CreatePerson();
DateTimeOffset OldestReportReleaseDate = Report.GetOldestReportReleaseDateTime();
// LegalAuthenticator/time/@value
cdaContext.LegalAuthenticator.Participant.DateTimeAuthenticated = new ISO8601DateTime(OldestReportReleaseDate.DateTime, ISO8601DateTime.Precision.Second, OldestReportReleaseDate.Offset);
Spia.PathologyReportModel.Model.Provider FirstReportingPathologist = Report.ReportList.First().ReportingPathologist;
//LegalAuthenticator/assignedEntity/assignedPerson/<Person Name>
var ReportingPathologistName = BaseCDAModel.CreatePersonName();
if (FirstReportingPathologist.Name.Given is object)
{
ReportingPathologistName.GivenNames = new List <string> {
FirstReportingPathologist.Name.Given
};
}
ReportingPathologistName.FamilyName = FirstReportingPathologist.Name.Family;
if (FirstReportingPathologist.Name.Title is object)
{
ReportingPathologistName.Titles = new List <string> {
FirstReportingPathologist.Name.Title
};
}
ReportingPathologistName.NameUsages = new List <NameUsage> {
NameUsage.Legal
};
cdaContext.LegalAuthenticator.Participant.Person.PersonNames = new List <Nehta.VendorLibrary.CDA.IPersonName> {
ReportingPathologistName
};
// LegalAuthenticator/assignedEntity/<Entity Identifier>
cdaContext.LegalAuthenticator.Participant.Person.Identifiers = new List <Identifier>
{
BaseCDAModel.CreateHealthIdentifier(HealthIdentifierType.HPII, FirstReportingPathologist.IdentifierList.SingleOrDefault(x => x.Type == PathologyReportModel.Model.IdentifierType.HPII).Value.Replace(" ", ""))
};
// LegalAuthenticator/assignedEntity/code
cdaContext.LegalAuthenticator.Role = BaseCDAModel.CreateRole(Occupation.Pathologist, Nehta.VendorLibrary.CDA.Generator.Enums.CodingSystem.ANZSCORevision1);
cdaContext.LegalAuthenticator.Participant.Addresses = new List <IAddress>()
{
GetCdaAddress(Report.PerformingLaboratory.Address)
};
// LegalAuthenticator/assignedEntity/<Electronic Communication Detail>
cdaContext.LegalAuthenticator.Participant.ElectronicCommunicationDetails = new List <ElectronicCommunicationDetail> {
PerformingPathologyLabComms
};
// LegalAuthenticator/assignedEntity/representedOrganization
cdaContext.LegalAuthenticator.Participant.Organisation = BaseCDAModel.CreateOrganisationName();
// LegalAuthenticator/assignedEntity/representedOrganization/name
cdaContext.LegalAuthenticator.Participant.Organisation.Name = Report.PerformingLaboratory.FacilityName;
// LegalAuthenticator/assignedEntity/representedOrganization/<Entity Identifier>
cdaContext.LegalAuthenticator.Participant.Organisation.Identifiers = new List <Identifier>();
var CodableConceptNataSiteNumber = BaseCDAModel.CreateCodableText();
CodableConceptNataSiteNumber.Code = "XX";
CodableConceptNataSiteNumber.CodeSystemName = "Identifier Type (HL7)";
CodableConceptNataSiteNumber.CodeSystemCode = "2.16.840.1.113883.12.203";
CodableConceptNataSiteNumber.DisplayName = "Organization identifier";
var NataSiteNumber = BaseCDAModel.CreateIdentifier("1.2.36.1.2001.1005.74", Report.PerformingLaboratory.NataSiteNumber);
NataSiteNumber.Code = CodableConceptNataSiteNumber;
NataSiteNumber.AssigningGeographicArea = "National Identifier";
NataSiteNumber.AssigningAuthorityName = "NATA Site Number";
cdaContext.LegalAuthenticator.Participant.Organisation.Identifiers.Add(NataSiteNumber);
//cdaContext.LegalAuthenticator.Participant.Organisation.Identifiers.Add(BaseCDAModel.CreateIdentifier("NATA", Nehta.VendorLibrary.CDA.Generator.Enums.HealthcareIdentifierGeographicArea.NationalIdentifier, PerformingPathologyLab.NataSiteNumber, "1.2.36.1.2001.1005.12", BaseCDAModel.CreateCodableText("AUSNATA", Nehta.VendorLibrary.CDA.Generator.Enums.CodingSystem.HL7IdentifierType, "National Association of Testing Authorities (NATA) Site Number")));
cdaContext.LegalAuthenticator.Participant.Organisation.Identifiers.Add(BaseCDAModel.CreateHealthIdentifier(HealthIdentifierType.HPIO, Report.PerformingLaboratory.Hpio.Replace(" ", "")));
pathologyResultReport.CDAContext = cdaContext;
#endregion
#region Setup and Populate the SCS Context model
pathologyResultReport.SCSContext = PathologyResultReport.CreateSCSContext();
// Author Health Care Provider
pathologyResultReport.SCSContext.Author = BaseCDAModel.CreateAuthorHealthcareProvider();
// Document Author > Participant
pathologyResultReport.SCSContext.Author.Participant = BaseCDAModel.CreateParticipantForAuthorHealthcareProvider();
pathologyResultReport.SCSContext.Author.AuthorParticipationPeriodOrDateTimeAuthored = BaseCDAModel.CreateParticipationPeriod(new ISO8601DateTime(OldestReportReleaseDate.DateTime, ISO8601DateTime.Precision.Second, OldestReportReleaseDate.Offset));
// Document Author > Role = AddressPurpose.Residential
pathologyResultReport.SCSContext.Author.Role = BaseCDAModel.CreateRole(Occupation.Pathologist, Nehta.VendorLibrary.CDA.Generator.Enums.CodingSystem.ANZSCORevision1);
// Document Author > Participant > Person or Organisation or Device > Person > Person Name (Note: 1..* in ACI)
pathologyResultReport.SCSContext.Author.Participant.Person = BaseCDAModel.CreatePersonHealthcareProvider();
pathologyResultReport.SCSContext.Author.Participant.Person.PersonNames = new List <IPersonName> {
ReportingPathologistName
};
//person.PersonNames = new List<IPersonName> { ReportingPathologistName };
//if (!mandatoryOnly)
//{
// // Not providing a family name will insert a nullflavor of 'NI'
// name.FamilyName = "Doctor family name";
//}
pathologyResultReport.SCSContext.Author.Participant.Person.Identifiers = cdaContext.LegalAuthenticator.Participant.Person.Identifiers;
pathologyResultReport.SCSContext.Author.Participant.Person.Organisation = BaseCDAModel.CreateEmploymentOrganisation();
pathologyResultReport.SCSContext.Author.Participant.Person.Organisation.Name = Report.PerformingLaboratory.FacilityName;
pathologyResultReport.SCSContext.Author.Participant.Person.Organisation.Identifiers = new List <Identifier>()
{
BaseCDAModel.CreateHealthIdentifier(HealthIdentifierType.HPIO, Report.PerformingLaboratory.Hpio.Replace(" ", ""))
};
pathologyResultReport.SCSContext.Author.Participant.ElectronicCommunicationDetails = new List <ElectronicCommunicationDetail>()
{
PerformingPathologyLabComms
};
// Document Author > Participant > Addresses
pathologyResultReport.SCSContext.Author.Participant.Addresses = new List <IAddress>
{
GetCdaAddress(Report.PerformingLaboratory.Address)
};
// Document Author > Participant > Address (Note: optional in ACI)
pathologyResultReport.SCSContext.Author.Participant.Person.Organisation.Addresses = new List <IAddress>
{
GetCdaAddress(Report.PerformingLaboratory.Address)
};
pathologyResultReport.SCSContext.Author.Participant.Person.Organisation.Name = Report.PerformingLaboratory.FacilityName;
pathologyResultReport.SCSContext.Author.Participant.Person.Organisation.NameUsage = OrganisationNameUsage.BusinessName;
//pathologyResultReport.SCSContext.Author.Participant.Person.Organisation.Department = "Some department service provider";
//pathologyResultReport.SCSContext.Author.Participant.Person.Organisation.EmploymentType = BaseCDAModel.CreateCodableText(null, null, null, "Casual", null);
pathologyResultReport.SCSContext.Author.Participant.Person.Organisation.Occupation = BaseCDAModel.CreateRole(Occupation.Pathologist, Nehta.VendorLibrary.CDA.Generator.Enums.CodingSystem.ANZSCORevision1);
//pathologyResultReport.SCSContext.Author.Participant.Person.Organisation.PositionInOrganisation = BaseCDAModel.CreateCodableText(null, null, null, "Manager", null);
pathologyResultReport.SCSContext.Author.Participant.Person.Organisation.ElectronicCommunicationDetails = new List <ElectronicCommunicationDetail>
{
PerformingPathologyLabComms
};
// The Reporting Pathologist
pathologyResultReport.SCSContext.ReportingPathologist = PathologyResultReport.CreateReportingPathologist();
// Document reportingPathologist > Participant
pathologyResultReport.SCSContext.ReportingPathologist.Participant = PathologyResultReport.CreateParticipantForReportingPathologist();
pathologyResultReport.SCSContext.ReportingPathologist.Participant.Person = BaseCDAModel.CreatePersonWithOrganisation();
pathologyResultReport.SCSContext.ReportingPathologist.Participant.Person.PersonNames = new List <IPersonName> {
ReportingPathologistName
};
// Participation Period
pathologyResultReport.SCSContext.ReportingPathologist.ParticipationEndTime = new ISO8601DateTime(OldestReportReleaseDate.DateTime, ISO8601DateTime.Precision.Second, OldestReportReleaseDate.Offset);
// Document reportingPathologist > Role
pathologyResultReport.SCSContext.ReportingPathologist.Role = PathologyResultReport.CreateRole(Occupation.Pathologist);
// Document reportingPathologist > Participant > Address
pathologyResultReport.SCSContext.ReportingPathologist.Participant.Addresses = new List <IAddress>()
{
GetCdaAddress(Report.PerformingLaboratory.Address)
};
pathologyResultReport.SCSContext.ReportingPathologist.Participant.ElectronicCommunicationDetails = new List <ElectronicCommunicationDetail> {
PerformingPathologyLabComms
};
pathologyResultReport.SCSContext.ReportingPathologist.Participant.Person = pathologyResultReport.SCSContext.Author.Participant.Person;
// Order Details
pathologyResultReport.SCSContext.OrderDetails = DiagnosticImagingReport.CreateOrderDetails();
// Requester Order Identifier
//pathologyResultReport.SCSContext.OrderDetails.RequesterOrderIdentifier = BaseCDAModel.CreateIdentifier("1.2.36.1.2001.1005.52.8003620833333789", "10523479");
// Requester
pathologyResultReport.SCSContext.OrderDetails.Requester = BaseCDAModel.CreateRequester();
pathologyResultReport.SCSContext.OrderDetails.Requester.ParticipationEndTime = new ISO8601DateTime(Report.Request.RequestedDate.DateTime, ISO8601DateTime.Precision.Day, Report.Request.RequestedDate.Offset);
// Document Requester> Role
pathologyResultReport.SCSContext.OrderDetails.Requester.Role = BaseCDAModel.CreateRole(Occupation.GeneralMedicalPractitioner, Nehta.VendorLibrary.CDA.Generator.Enums.CodingSystem.ANZSCORevision1);
pathologyResultReport.SCSContext.OrderDetails.Requester.Participant = BaseCDAModel.CreateParticipantForRequester();
pathologyResultReport.SCSContext.OrderDetails.Requester.Participant.Person = BaseCDAModel.CreatePersonWithOrganisation();
// Participation Period
var RequestingDoctorName = BaseCDAModel.CreatePersonName();
RequestingDoctorName.FamilyName = Report.Request.RequestingProvider.Name.Family;
if (Report.Request.RequestingProvider.Name.Given is object)
{
RequestingDoctorName.GivenNames = new List <string>()
{
Report.Request.RequestingProvider.Name.Given
};
}
pathologyResultReport.SCSContext.OrderDetails.Requester.Participant.Person.PersonNames = new List <IPersonName>()
{
RequestingDoctorName
};
pathologyResultReport.SCSContext.OrderDetails.Requester.Participant.Person.Identifiers = new List <Identifier>();
///Get Requester HPI-I
var RequesterHpii = Report.Request.RequestingProvider.IdentifierList.SingleOrDefault(x => x.Type == PathologyReportModel.Model.IdentifierType.HPII);
if (RequesterHpii is object)
{
pathologyResultReport.SCSContext.OrderDetails.Requester.Participant.Person.Identifiers.Add(BaseCDAModel.CreateHealthIdentifier(HealthIdentifierType.HPII, RequesterHpii.Value.Replace(" ", "")));
}
///Get Requester Medicare Provider Number
var RequesterMedicareProvidernumber = Report.Request.RequestingProvider.IdentifierList.SingleOrDefault(x => x.Type == PathologyReportModel.Model.IdentifierType.MedicareProviderNumber);
if (RequesterMedicareProvidernumber is object)
{
var MedicareProvidernumberIdentifier = BaseCDAModel.CreateIdentifier("Medicare", Nehta.VendorLibrary.CDA.Generator.Enums.HealthcareIdentifierGeographicArea.NationalIdentifier, RequesterMedicareProvidernumber.Value, "1.2.36.174030967.0.2", BaseCDAModel.CreateCodableText("AUSHICPR", Nehta.VendorLibrary.CDA.Generator.Enums.CodingSystem.HL7IdentifierType, "Medicare Provider Number"));
pathologyResultReport.SCSContext.OrderDetails.Requester.Participant.Person.Identifiers.Add(MedicareProvidernumberIdentifier);
}
// Subject Of Care
pathologyResultReport.SCSContext.SubjectOfCare = BaseCDAModel.CreateSubjectOfCare();
pathologyResultReport.SCSContext.SubjectOfCare.Participant = BaseCDAModel.CreateParticipantForSubjectOfCare();
pathologyResultReport.SCSContext.SubjectOfCare.Participant.Person = BaseCDAModel.CreatePersonForSubjectOfCare();
pathologyResultReport.SCSContext.SubjectOfCare.Participant.Person.PersonNames = new List <IPersonName>();
pathologyResultReport.SCSContext.SubjectOfCare.Participant.Person.PersonNames.Add(GetCdaPatientName(Report.Patient.Name));
pathologyResultReport.SCSContext.SubjectOfCare.Participant.Person.Gender = GetCdaGender(Report.Patient.Gender);
pathologyResultReport.SCSContext.SubjectOfCare.Participant.Person.DateOfBirth = new ISO8601DateTime(Report.Patient.DateOfBirth, ISO8601DateTime.Precision.Day);
pathologyResultReport.SCSContext.SubjectOfCare.Participant.Person.IndigenousStatus = IndigenousStatus.NeitherAboriginalNorTorresStraitIslanderOrigin;
//Phone numbers
if (Report.Patient.HomePhoneNumber is object)
{
if (pathologyResultReport.SCSContext.SubjectOfCare.Participant.ElectronicCommunicationDetails is null)
{
pathologyResultReport.SCSContext.SubjectOfCare.Participant.ElectronicCommunicationDetails = new List <ElectronicCommunicationDetail>();
}
//Work out if it is a Mobile number
ElectronicCommunicationMedium ElectronicCommunicationMedium = ElectronicCommunicationMedium.Telephone;
if (Report.Patient.HomePhoneNumber.Replace(" ", "").StartsWith("04", StringComparison.CurrentCultureIgnoreCase) || Report.Patient.HomePhoneNumber.Replace(" ", "").StartsWith("+614", StringComparison.CurrentCultureIgnoreCase))
{
ElectronicCommunicationMedium = ElectronicCommunicationMedium.Mobile;
}
pathologyResultReport.SCSContext.SubjectOfCare.Participant.ElectronicCommunicationDetails.Add(
BaseCDAModel.CreateElectronicCommunicationDetail(
Report.Patient.HomePhoneNumber,
ElectronicCommunicationMedium,
ElectronicCommunicationUsage.Home)
);
}
//Address
pathologyResultReport.SCSContext.SubjectOfCare.Participant.Addresses = new List <IAddress>();
foreach (var Address in Report.Patient.AddressList)
{
pathologyResultReport.SCSContext.SubjectOfCare.Participant.Addresses.Add(GetCdaAddress(Address));
}
pathologyResultReport.SCSContext.SubjectOfCare.Participant.Person.Identifiers = new List <Identifier>();
var IhiNumber = Report.Patient.IdentifierList.SingleOrDefault(x => x.Type == PathologyReportModel.Model.IdentifierType.IHI);
if (IhiNumber is object)
{
pathologyResultReport.SCSContext.SubjectOfCare.Participant.Person.Identifiers.Add(BaseCDAModel.CreateHealthIdentifier(HealthIdentifierType.IHI, IhiNumber.Value.Replace(" ", "")));
}
var MedicareNumber = Report.Patient.IdentifierList.SingleOrDefault(x => x.Type == PathologyReportModel.Model.IdentifierType.MedicareNumber);
if (MedicareNumber is object)
{
//Medicare Number goes in Entitlements as it is not a true identifier legally
var MedicareEntitlement = BaseCDAModel.CreateEntitlement();
MedicareEntitlement.Id = BaseCDAModel.CreateMedicareNumber(MedicareNumberType.MedicareCardNumber, MedicareNumber.Value.Replace(" ", ""));
MedicareEntitlement.Type = EntitlementType.MedicareBenefits;
//MedicareEntitlement.ValidityDuration = BaseCDAModel.CreateInterval(new ISO8601DateTime(DateTime.Now), new ISO8601DateTime(DateTime.Now));
pathologyResultReport.SCSContext.SubjectOfCare.Participant.Entitlements = new List <Entitlement> {
MedicareEntitlement
};
}
//var MrnNumber = this.Input.Message.Segment("PID").Element(3).RepeatList.SingleOrDefault(x => x.Component(5).AsString.Equals("MR", StringComparison.CurrentCultureIgnoreCase));
//if (MrnNumber is object)
//{
// pathologyResultReport.SCSContext.SubjectOfCare.Participant.Person.Identifiers.Add(BaseCDAModel.CreateMedicalRecordNumber(MrnNumber.Component(1).AsString, "We need a root OID for the MRN Facility", MrnNumber.Component(4).AsString));
//}
#endregion
#region Setup and populate the SCS Content model
// Setup and populate the SCS Content model
pathologyResultReport.SCSContent = PathologyResultReport.CreateSCSContent();
// Pathology Test Result
string ReportLinkName = string.Empty;
pathologyResultReport.SCSContent.PathologyTestResult = new List <Nehta.VendorLibrary.CDA.SCSModel.Pathology.PathologyTestResult>();
foreach (var Panel in Report.ReportList)
{
var TestResult = PathologyResultReport.CreatePathologyTestResult();
pathologyResultReport.SCSContent.PathologyTestResult.Add(TestResult);
// Please note optional field - Note: This field is only displayed in the Narrative
TestResult.ReportingPathologistForTestResult = Report.ReportList.First().ReportingPathologist.Name.Title ?? "";
TestResult.ReportingPathologistForTestResult = $"{TestResult.ReportingPathologistForTestResult} {Report.ReportList.First().ReportingPathologist.Name.Family.ToUpper()}";
TestResult.ReportingPathologistForTestResult = $"{TestResult.ReportingPathologistForTestResult}, {Report.ReportList.First().ReportingPathologist.Name.Given ?? ""}";
if (!string.IsNullOrWhiteSpace(Panel.ReportType.Local.Oid))
{
TestResult.TestResultName = BaseCDAModel.CreateCodableText();
TestResult.TestResultName.Code = Panel.ReportType.Local.Term;
TestResult.TestResultName.DisplayName = Panel.ReportType.Local.Description;
TestResult.TestResultName.CodeSystemCode = Panel.ReportType.Local.Oid;
TestResult.TestResultName.OriginalText = Panel.ReportType.Local.Description;
}
else
{
TestResult.TestResultName = BaseCDAModel.CreateCodableText();
TestResult.TestResultName.OriginalText = Panel.ReportType.Local.Description;
}
if (Panel.ReportType.Snomed is object)
{
TestResult.TestResultName.Translations = new List <ICodableTranslation>();
TestResult.TestResultName.Translations.Add(BaseCDAModel.CreateCodableTranslation(Panel.ReportType.Snomed.Term, Nehta.VendorLibrary.CDA.Generator.Enums.CodingSystem.SNOMED, Panel.ReportType.Snomed.Description));
}
// Department Code
TestResult.PathologyDiscipline = GetCdaDiagnosticService(Panel.Department);
// ResultStatus
TestResult.OverallTestResultStatus = GetCdaResultStatus(Panel.ReportStatus);
// Test Specimen Detail
TestResult.TestSpecimenDetail = PathologyResultReport.CreateTestSpecimenDetail();
TestResult.TestSpecimenDetail.CollectionDateTime = new ISO8601DateTime(Panel.CollectionDateTime.DateTime, ISO8601DateTime.Precision.Minute, Panel.CollectionDateTime.Offset);
TestResult.ObservationDateTime = TestResult.TestSpecimenDetail.CollectionDateTime;
}
// Related Document
pathologyResultReport.SCSContent.RelatedDocument = PathologyResultReport.CreateRelatedDocument();
System.IO.FileInfo PdfFileInfo = new System.IO.FileInfo(System.IO.Path.Combine(PdfDirectory, Report.PdfFileName));
if (!PdfFileInfo.Exists)
{
throw new FieldAccessException($"Unable to locate PDF attachment file at path: {PdfFileInfo.FullName}");
}
if (!PdfFileInfo.Extension.EndsWith(".pdf", StringComparison.CurrentCultureIgnoreCase))
{
throw new FieldAccessException($"The report attachment file must be in a .pdf format.");
}
// Pathology PDF
var AttachmentPdf = BaseCDAModel.CreateExternalData();
AttachmentPdf.ExternalDataMediaType = Nehta.VendorLibrary.CDA.Generator.Enums.MediaType.PDF;
//We have to move the PDF attachment file to a new place and then rename it to 'attachment.pdf' and then after
//generating the CDA document we will delete at copy of the PDF.
System.IO.FileInfo TempAttachmentFilePath = new System.IO.FileInfo(System.IO.Path.Combine(TempWorkingDirectoryPath.FullName, "attachment.pdf"));
if (TempAttachmentFilePath.Exists)
{
TempAttachmentFilePath.Delete();
}
PdfFileInfo.CopyTo(TempAttachmentFilePath.FullName);
AttachmentPdf.Path = TempAttachmentFilePath.FullName;
pathologyResultReport.SCSContent.RelatedDocument.ExaminationResultRepresentation = AttachmentPdf;
// Document Provenance
pathologyResultReport.SCSContent.RelatedDocument.DocumentDetails = BaseCDAModel.CreateDocumentDetails();
// Report Identifier
pathologyResultReport.SCSContent.RelatedDocument.DocumentDetails.ReportIdentifier = BaseCDAModel.CreateIdentifier($"1.2.36.1.2001.1005.54.{Report.PerformingLaboratory.Hpio.Replace(" ", "")}", Report.ReportList.First().ReportId);
// Report Date
pathologyResultReport.SCSContent.RelatedDocument.DocumentDetails.ReportDate = new ISO8601DateTime(Report.GetOldestReportReleaseDateTime().DateTime, ISO8601DateTime.Precision.Second, Report.GetOldestReportReleaseDateTime().Offset);
// Result Status
pathologyResultReport.SCSContent.RelatedDocument.DocumentDetails.ReportStatus = GetCdaResultStatus(Report.GetRolledUpReportStatus());
// Report Name
if (Report.ReportList.Count == 1)
{
pathologyResultReport.SCSContent.RelatedDocument.DocumentDetails.ReportDescription = Report.ReportList[0].ReportType.Local.Description;
}
else
{
pathologyResultReport.SCSContent.RelatedDocument.DocumentDetails.ReportDescription = "Pathology Report";
}
#endregion
XmlDocument xmlDoc;
try
{
Nehta.VendorLibrary.CDA.Generator.CDAGenerator.NarrativeGenerator = new Nehta.VendorLibrary.CDA.Generator.CDANarrativeGenerator();
//Pass the Event Summary model into the GeneratePathologyResultReport method
xmlDoc = Nehta.VendorLibrary.CDA.Generator.CDAGenerator.GeneratePathologyResultReport(pathologyResultReport);
System.IO.DirectoryInfo CdaOutputDirectoryInfo = new System.IO.DirectoryInfo(CdaOutputDirectory);
System.IO.FileInfo CdaFileInfo = new System.IO.FileInfo(System.IO.Path.Combine(CdaOutputDirectoryInfo.FullName, Report.PdfFileName.Replace(".pdf", ".xml")));
if (System.IO.File.Exists(CdaFileInfo.FullName))
{
System.IO.File.Delete(CdaFileInfo.FullName);
}
using (var writer = XmlWriter.Create(CdaFileInfo.FullName, new XmlWriterSettings {
Indent = true
}))
{
xmlDoc.Save(writer);
}
}
catch (Nehta.VendorLibrary.Common.ValidationException ex)
{
//Catch any validation exceptions
var validationMessages = ex.GetMessagesString();
throw new ApplicationException($"Error encountered in generating CDA document: {validationMessages}");
}
finally
{
TempAttachmentFilePath.Delete();
}
}
/// <summary>
/// Create a PathologyTransformResult instance (containing a PathologyResultReport and a ReportAttachment instance) from a HL7 V2 pathology message.
/// The PathologyTransformResult instance is then used to generate a CDA document.
/// </summary>
/// <param name="hl7GenericMessage">The HL7 V2 message to transform.</param>
/// <param name="metadata">Mandatory information to supplement the transform.</param>
/// <param name="reportData">Report data.</param>
/// <returns></returns>
internal PathologyTransformResult Transform(HL7GenericMessage hl7GenericMessage, PathologyMetadata metadata, byte[] reportData = null)
{
PathologyResultReport pathologyResultReport = PathologyResultReport.CreatePathologyResultReport();
// Include Logo
pathologyResultReport.IncludeLogo = false;
// Set Creation Time
pathologyResultReport.DocumentCreationTime = GetResultsReportStatusChange(hl7GenericMessage);
// Document Status
pathologyResultReport.DocumentStatus = GetReportStatus(hl7GenericMessage);
#region Setup and populate the CDA context model
// CDA Context model
var cdaContext = PathologyResultReport.CreateCDAContext();
// Document Id
cdaContext.DocumentId = BaseCDAModel.CreateIdentifier(BaseCDAModel.CreateOid(), null);
// Set Id
cdaContext.SetId = BaseCDAModel.CreateIdentifier(BaseCDAModel.CreateGuid(), null);
// CDA Context Version
cdaContext.Version = "1";
// Legal Authenticator
cdaContext.LegalAuthenticator = CreateLegalAuthenticator(hl7GenericMessage);
// Custodian
cdaContext.Custodian = BaseCDAModel.CreateCustodian();
ICustodian custodian = BaseCDAModel.CreateParticipantCustodian();
cdaContext.Custodian.Participant = custodian;
pathologyResultReport.CDAContext = cdaContext;
#endregion
#region Setup and Populate the SCS Context model
// SCS Context model
pathologyResultReport.SCSContext = PathologyResultReport.CreateSCSContext();
// Author Health Care Provider
pathologyResultReport.SCSContext.Author = CreateAuthor(hl7GenericMessage);
// The Reporting Pathologist
pathologyResultReport.SCSContext.ReportingPathologist = CreateReportingPathologist(hl7GenericMessage);
// Order Details
pathologyResultReport.SCSContext.OrderDetails = CreateOrderDetails(hl7GenericMessage);
// Subject Of Care
pathologyResultReport.SCSContext.SubjectOfCare = CreateSubjectOfCare(hl7GenericMessage);
#endregion
#region Setup and populate the SCS Content model
// SCS Content model
pathologyResultReport.SCSContent = PathologyResultReport.CreateSCSContent();
ReportAttachment reportAttachment = GetReportAttachment(hl7GenericMessage, reportData);
// Pathology Test Result
pathologyResultReport.SCSContent.PathologyTestResult = CreatePathologyTestResults(hl7GenericMessage);
// Related Document
pathologyResultReport.SCSContent.RelatedDocument = CreateRelatedDocument(hl7GenericMessage, reportAttachment);
#endregion
FillInAdditionalMetadata(pathologyResultReport, metadata);
return(new PathologyTransformResult
{
PathologyResultReport = pathologyResultReport,
Attachment = reportAttachment
});
}