public ParameterIdentificationConfigurationDTO MapFrom(ParameterIdentificationConfiguration parameterIdentificationConfiguration, IReadOnlyList <IOptimizationAlgorithm> allAlgorithms)
{
return(new ParameterIdentificationConfigurationDTO(parameterIdentificationConfiguration)
{
OptimizationAlgorithm = algorithmByName(allAlgorithms, parameterIdentificationConfiguration.AlgorithmProperties?.Name)
});
}
public IResidualCalculator CreateFor(ParameterIdentificationConfiguration parameterIdentificationConfiguration)
{
var residualCalculator = createCalculator(parameterIdentificationConfiguration.LLOQMode);
residualCalculator.Initialize(parameterIdentificationConfiguration.RemoveLLOQMode);
return(residualCalculator);
}
public void EditParameterIdentification(ParameterIdentification parameterIdentification)
{
_parameterIdentification = parameterIdentification;
_configuration = _parameterIdentification.Configuration;
//Sequence is important here :Set default algorithm if required and then create the DTO
setDefaultAlgorithm();
var parameterIdentificationConfigurationDTO = _configurationToConfigurationDTOMapper.MapFrom(_configuration, Algorithms);
editAlgorithmOptions();
editParameterIdentificationOptions();
_view.BindTo(parameterIdentificationConfigurationDTO);
}
protected override void Context()
{
base.Context();
_cloneManager = A.Fake <ICloneManager>();
_sourceParameterIdentificationConfiguration = new ParameterIdentificationConfiguration
{
LLOQMode = LLOQModes.SimulationOutputAsObservedDataLLOQ,
RemoveLLOQMode = RemoveLLOQModes.NoTrailing,
AlgorithmProperties = new OptimizationAlgorithmProperties("toto"),
RunMode = new MultipleParameterIdentificationRunMode {
NumberOfRuns = 10
}
};
}
protected override Task Context()
{
_parameterIdentificationConfigurationMapper = A.Fake <ParameterIdentificationConfigurationMapper>();
_outputMappingMapper = A.Fake <OutputMappingMapper>();
_identificationParameterMapper = A.Fake <IdentificationParameterMapper>();
_parameterIdentificationAnalysisMapper = A.Fake <ParameterIdentificationAnalysisMapper>();
_objectBaseFactory = A.Fake <IObjectBaseFactory>();
_logger = A.Fake <IOSPSuiteLogger>();
_project = new PKSimProject();
_snapshotContext = new SnapshotContext(_project, ProjectVersions.Current);
_simulation = new IndividualSimulation().WithName("S1");
_project.AddBuildingBlock(_simulation);
_parameterIdentification = new ModelParameterIdentification();
_snapshotParameterIndentificationConfiguration = new ParameterIdentificationConfiguration();
_snapshotOutputMapping = new Snapshots.OutputMapping();
_outputMapping = new OutputMapping();
_parameterIdentification.AddSimulation(_simulation);
_parameterIdentification.AddOutputMapping(_outputMapping);
_identificationParameter = new IdentificationParameter {
Name = "IP"
};
_parameterIdentification.AddIdentificationParameter(_identificationParameter);
_snapshotIdentificationParameter = new Snapshots.IdentificationParameter();
_snapshotParameterIdentificationAnalysis = new ParameterIdentificationAnalysis();
_parameterIdentificationAnalysis = A.Fake <ISimulationAnalysis>();
_parameterIdentification.AddAnalysis(_parameterIdentificationAnalysis);
sut = new ParameterIdentificationMapper(
_parameterIdentificationConfigurationMapper,
_outputMappingMapper,
_identificationParameterMapper,
_parameterIdentificationAnalysisMapper,
_objectBaseFactory,
_logger
);
A.CallTo(() => _parameterIdentificationConfigurationMapper.MapToSnapshot(_parameterIdentification.Configuration)).Returns(_snapshotParameterIndentificationConfiguration);
A.CallTo(() => _outputMappingMapper.MapToSnapshot(_outputMapping)).Returns(_snapshotOutputMapping);
A.CallTo(() => _identificationParameterMapper.MapToSnapshot(_identificationParameter)).Returns(_snapshotIdentificationParameter);
A.CallTo(() => _parameterIdentificationAnalysisMapper.MapToSnapshot(_parameterIdentificationAnalysis)).Returns(_snapshotParameterIdentificationAnalysis);
return(_completed);
}
protected override void Context()
{
sut = new ParameterIdentificationConfigurationToParameterIdentificationConfigurationDTOMapper();
_parameterIdentificationConfiguration = new ParameterIdentificationConfiguration();
_option1 = A.Fake <IOptimizationAlgorithm>();
A.CallTo(() => _option1.Name).Returns("option1");
_option2 = A.Fake <IOptimizationAlgorithm>();
A.CallTo(() => _option2.Name).Returns("option2");
_option3 = A.Fake <IOptimizationAlgorithm>();
A.CallTo(() => _option3.Name).Returns("option3");
_allAlgorithms = new[] { _option2, _option1, _option3 };
}
public ParameterIdentificationConfigurationDTO(ParameterIdentificationConfiguration parameterIdentificationConfiguration)
{
_parameterIdentificationConfiguration = parameterIdentificationConfiguration;
}