public WiffFileReader(string wiffFilePath, string licenseFilePath)
{
if (string.IsNullOrWhiteSpace(wiffFilePath))
{
throw new ArgumentNullException("wiffFilePath");
}
if (string.IsNullOrWhiteSpace(licenseFilePath))
{
throw new ArgumentNullException("licenseFilePath");
}
if (!File.Exists(wiffFilePath))
{
throw new FileNotFoundException("Wiff file not exists.");
}
try
{
ReadWiffLicense(licenseFilePath);
this.dataProvider = new AnalystWiffDataProvider(true);
this.batch = AnalystDataProviderFactory.CreateBatch(wiffFilePath, dataProvider);
this.wiffFilePath = wiffFilePath;
this.model = MzLiteJson.HandleExternalModelFile(this, GetModelFilePath());
}
catch (Exception ex)
{
throw new MzLiteIOException(ex.Message, ex);
}
}
public ThermoRawFileReader(string rawFilePath)
{
this.rawFilePath = rawFilePath;
if (string.IsNullOrWhiteSpace(rawFilePath))
{
throw new ArgumentNullException("rawFilePath");
}
if (!File.Exists(rawFilePath))
{
throw new FileNotFoundException("Raw file not exists.");
}
try
{
rawFile = new MSFileReader_XRawfile() as IXRawfile5;
rawFile.Open(rawFilePath);
rawFile.SetCurrentController(0, 1);
startScanNo = GetFirstSpectrumNumber(rawFile);
endScanNo = GetLastSpectrumNumber(rawFile);
model = MzLiteJson.HandleExternalModelFile(this, GetModelFilePath());
}
catch (Exception ex)
{
throw new MzLiteIOException(ex.Message, ex);
}
}
public BafFileReader(string bafFilePath)
{
if (string.IsNullOrWhiteSpace(bafFilePath))
{
throw new ArgumentNullException("bafFilePath");
}
if (!File.Exists(bafFilePath))
{
throw new FileNotFoundException("Baf file not exists.");
}
this.bafFilePath = bafFilePath;
try
{
sqlFilePath = Baf2SqlWrapper.GetSQLiteCacheFilename(bafFilePath);
// First argument = 1, ignore contents of Calibrator.ami (if it exists)
baf2SqlHandle = Baf2SqlWrapper.baf2sql_array_open_storage(1, bafFilePath);
if (baf2SqlHandle == 0)
{
Baf2SqlWrapper.ThrowLastBaf2SqlError();
}
linq2BafSql = new Linq2BafSql(sqlFilePath);
model = MzLiteJson.HandleExternalModelFile(this, GetModelFilePath());
supportedVariables = SupportedVariablesCollection.ReadSupportedVariables(linq2BafSql);
}
catch (Exception ex)
{
throw new MzLiteIOException(ex.Message, ex);
}
}