/// <summary>
/// Read a MSPF parameter file and populate raw file and feature file.
/// </summary>
/// <param name="filePath">The path to the parameter file.</param>
private void ReadParamFile(string filePath)
{
if (!string.IsNullOrWhiteSpace(filePath))
{
var mspfParams = MsPfParameters.ReadFromFile(filePath);
var dirPath = Path.GetDirectoryName(filePath);
var raw = string.Format("{0}\\{1}", dirPath, mspfParams.PuSpecFile);
if (!string.IsNullOrWhiteSpace(mspfParams.PuSpecFile) && File.Exists(raw))
{
this.RawFilePath = raw;
}
var feature = string.Format("{0}\\{1}", dirPath, mspfParams.FeatureFile);
if (!string.IsNullOrWhiteSpace(mspfParams.FeatureFile) && File.Exists(feature))
{
this.FeatureFilePath = feature;
}
var fasta = string.Format("{0}\\{1}", dirPath, mspfParams.DatabaseFile);
if (!string.IsNullOrWhiteSpace(mspfParams.DatabaseFile) && File.Exists(fasta))
{
this.FastaFilePath = fasta;
}
}
}
/// <summary>
/// Set the MSPathFinder parameters given a path to a ID file.
/// </summary>
/// <param name="idFilePath">The id file path.</param>
public void SetMsPfParameters(string idFilePath)
{
try
{
this.MsPfParameters = MsPfParameters.ReadFromFile(idFilePath);
}
catch (FormatException)
{
this.dialogService.MessageBox("MsPathFinder Parameters are not properly formatted.");
}
}