private void ValidateScanInfoUsingCachedSpectra(
MsDataFileReaderBaseClass reader,
int expectedScanCount,
int expectedMS1,
int expectedMS2,
IReadOnlyDictionary <int, string> expectedScanInfo)
{
Console.WriteLine("Scan info for {0}", Path.GetFileName(reader.InputFilePath));
WriteScanInfoColumnNames(reader);
var scanCountMS1 = 0;
var scanCountMS2 = 0;
var scanCount = 0;
for (var spectrumIndex = 0; spectrumIndex < reader.CachedSpectrumCount; spectrumIndex++)
{
var validScan = reader.GetSpectrumByIndex(spectrumIndex, out var spectrumInfo);
Assert.IsTrue(validScan, "GetSpectrumByScanNumber returned false for index {0}", spectrumIndex);
if (expectedScanInfo.TryGetValue(spectrumInfo.ScanNumber, out _))
{
ValidateScanInfo(expectedScanInfo, spectrumInfo);
}
if (spectrumInfo.MSLevel == 1)
{
scanCountMS1++;
}
else if (spectrumInfo.MSLevel > 1)
{
scanCountMS2++;
}
scanCount++;
}
Console.WriteLine("scanCountMS1={0}", scanCountMS1);
Console.WriteLine("scanCountMS2={0}", scanCountMS2);
Assert.AreEqual(expectedScanCount, reader.ScanCount, "reader.ScanCount mismatch");
Assert.AreEqual(expectedScanCount, scanCount, "Scan count read mismatch");
Assert.AreEqual(expectedMS1, scanCountMS1, "MS1 scan count mismatch");
Assert.AreEqual(expectedMS2, scanCountMS2, "MS2 scan count mismatch");
}
private void ValidateScanInfoUsingReader(
MsDataFileReaderBaseClass reader,
int expectedScanCount,
int expectedMS1,
int expectedMS2,
IReadOnlyDictionary <int, string> expectedScanInfo)
{
Console.WriteLine("Scan info for {0}", Path.GetFileName(reader.InputFilePath));
WriteScanInfoColumnNames(reader);
var scanCountMS1 = 0;
var scanCountMS2 = 0;
var scanCount = 0;
while (reader.ReadNextSpectrum(out var spectrumInfo))
{
if (expectedScanInfo.TryGetValue(spectrumInfo.ScanNumber, out _))
{
ValidateScanInfo(expectedScanInfo, spectrumInfo);
}
if (spectrumInfo.MSLevel == 1)
{
scanCountMS1++;
}
else if (spectrumInfo.MSLevel > 1)
{
scanCountMS2++;
}
scanCount++;
}
Console.WriteLine("scanCountMS1={0}", scanCountMS1);
Console.WriteLine("scanCountMS2={0}", scanCountMS2);
Assert.AreEqual(expectedScanCount, reader.ScanCount, "reader.ScanCount mismatch");
Assert.AreEqual(expectedScanCount, scanCount, "Scan count read mismatch");
Assert.AreEqual(expectedMS1, scanCountMS1, "MS1 scan count mismatch");
Assert.AreEqual(expectedMS2, scanCountMS2, "MS2 scan count mismatch");
}
