public void TestStartIndex()
{
Modification modification = Modification.CreateNoChanged(new List <string> {
"aaa", "bbb", "ccc"
});
Assert.AreEqual(modification.Primary.StartIndex, 0);
Assert.AreEqual(modification.Secondary.StartIndex, 0);
ModificationCollection modifications = new ModificationCollection();
modifications.Add(modification);
modification = Modification.CreateAdded(new List <string> {
"ddd", "eee", "fff"
});
modifications.Add(modification);
Assert.AreEqual(modification.Primary.StartIndex, 3);
Assert.AreEqual(modification.Primary.Length, 0);
Assert.AreEqual(modification.Secondary.StartIndex, 3);
Assert.AreEqual(modification.Secondary.Length, 3);
modification = Modification.CreateAdded(new List <string> {
"ggg", "hhh", "iii"
});
modifications.Add(modification);
Assert.AreEqual(modification.Primary.StartIndex, 3);
Assert.AreEqual(modification.Primary.Length, 0);
Assert.AreEqual(modification.Secondary.StartIndex, 6);
Assert.AreEqual(modification.Secondary.Length, 3);
}
public void TestStartIndex()
{
Modification modification = Modification.CreateNoChanged(new List<string> {"aaa", "bbb", "ccc"});
Assert.AreEqual(modification.Primary.StartIndex, 0);
Assert.AreEqual(modification.Secondary.StartIndex, 0);
ModificationCollection modifications = new ModificationCollection();
modifications.Add(modification);
modification = Modification.CreateAdded(new List<string> { "ddd", "eee", "fff" });
modifications.Add(modification);
Assert.AreEqual(modification.Primary.StartIndex, 3);
Assert.AreEqual(modification.Primary.Length, 0);
Assert.AreEqual(modification.Secondary.StartIndex, 3);
Assert.AreEqual(modification.Secondary.Length, 3);
modification = Modification.CreateAdded(new List<string> { "ggg", "hhh", "iii" });
modifications.Add(modification);
Assert.AreEqual(modification.Primary.StartIndex, 3);
Assert.AreEqual(modification.Primary.Length, 0);
Assert.AreEqual(modification.Secondary.StartIndex, 6);
Assert.AreEqual(modification.Secondary.Length, 3);
}
public void ModificationCollectionTest()
{
ModificationCollection a = new ModificationCollection(new OldSchoolModification(1, "Mod1"), new OldSchoolModification(2, "Mod2"));
double lala = 0;
IEnumerable aasdf = a;
foreach (var jadfk in aasdf)
{
lala += (jadfk as IHasMass).MonoisotopicMass;
}
Assert.AreEqual(3, lala);
Assert.AreEqual("Mod1 | Mod2", a.ToString());
a.Add(new OldSchoolModification(3, "Mod3"));
Assert.AreEqual("Mod1 | Mod2 | Mod3", a.ToString());
Assert.IsTrue(a.Contains(new OldSchoolModification(2, "Mod2")));
IHasMass[] myArray = new IHasMass[4];
a.CopyTo(myArray, 1);
Assert.AreEqual(3, myArray.Sum(b => b == null ? 0 : 1));
Assert.AreEqual(3, a.Count());
Assert.IsFalse(a.IsReadOnly);
a.Remove(new OldSchoolModification(2, "Mod2"));
Assert.AreEqual("Mod1 | Mod3", a.ToString());
double ok = 0;
foreach (var b in a)
{
ok += b.MonoisotopicMass;
}
Assert.AreEqual(4, ok);
a.Clear();
Assert.AreEqual("", a.ToString());
}
private void miDelete_Click(object sender, EventArgs e)
{
#if CHECKERS
if (IsSelectionEmpty)
{
throw new InvalidOperationException();
}
#endif
var b = new StringBuilder();
bool isFirst = true;
foreach (var c in _selectionList)
{
if (!isFirst)
{
b.Append(", ");
}
else
{
isFirst = false;
}
b.Append(c.Owner.Title);
}
if (Extenders.ConfirmDelete(b.ToString()))
{
var list = _selectionList.ToArray();
UnSelectAll();
var mg = new ModificationCollection <HtmlControlModification>();
foreach (var c in list)
{
FreeResources(c.Owner);
HtmlDesignMovableControl owner = c.Owner;
owner.NotifyDelete();
mg.Add(HtmlControlModification.GetRemoved(owner));
owner.Parent = null;
}
if (mg.Count > 0)
{
HtmlPage.AddUndoOperation(mg.Count == 1 ? (IModification)mg[0] : mg);
}
else
{
throw new InvalidOperationException();
}
UpdateUndoRedoState();
}
}
private void Control_EndMove(HtmlDesignMovableControl c)
{
IModification m;
if (_selectionList.Count == 1)
{
HtmlDesignMovableControl o = _selectionList[0].Owner;
Point previousLocation = _PreviousLocations[o];
m = previousLocation != o.Control.Location ? HtmlControlModification.GetMoved(o, previousLocation) : (IModification)null;
}
else
{
var list = new ModificationCollection <HtmlControlModification>();
foreach (var bc in _selectionList)
{
HtmlDesignMovableControl o = bc.Owner;
Point previousLocation = _PreviousLocations[o];
if (previousLocation != o.Control.Location)
{
list.Add(HtmlControlModification.GetMoved(o, previousLocation));
}
}
if (list.Count == 1)
{
m = list[0];
}
else
{
m = list.Count > 0 ? list : null;
}
}
if (m != null)
{
HtmlPage.AddUndoOperation(m);
UpdateUndoRedoState();
}
c.Control.LocationChanged -= Control_LocationChanged;
}
private void miDelete_Click(object sender, EventArgs e)
{
#if CHECKERS
if (IsSelectionEmpty)
{
throw new InvalidOperationException();
}
#endif
var b = new StringBuilder();
bool isFirst = true;
foreach (var c in _selectionList)
{
if (!isFirst)
{
b.Append(", ");
}
else
{
isFirst = false;
}
b.Append(c.Owner.Title);
}
if (Extenders.ConfirmDelete(b.ToString()))
{
var list = _selectionList.ToArray();
UnSelectAll();
var mg = new ModificationCollection<HtmlControlModification>();
foreach (var c in list)
{
FreeResources(c.Owner);
HtmlDesignMovableControl owner = c.Owner;
owner.NotifyDelete();
mg.Add(HtmlControlModification.GetRemoved(owner));
owner.Parent = null;
}
if (mg.Count > 0)
{
HtmlPage.AddUndoOperation(mg.Count == 1 ? (IModification)mg[0] : mg);
}
else
{
throw new InvalidOperationException();
}
UpdateUndoRedoState();
}
}
public static IEnumerable<Peptide> GetUniquePeptides(Peptide peptide)
{
QuantitationChannelSet quantSetMod;
IMass mod;
ModificationCollection modCol;
HashSet<QuantitationChannelSet> sets = new HashSet<QuantitationChannelSet>();
Dictionary<IQuantitationChannel, HashSet<int>> locations = new Dictionary<IQuantitationChannel, HashSet<int>>();
HashSet<int> residues;
IMass[] mods = peptide.Modifications;
int modLength = mods.Length;
for (int i = 0; i < modLength; i++)
{
if (mods[i] != null)
{
mod = mods[i];
List<QuantitationChannelSet> channelsets = new List<QuantitationChannelSet>();
if ((modCol = mod as ModificationCollection) != null)
{
foreach (IMass mod2 in modCol)
{
if ((quantSetMod = mod2 as QuantitationChannelSet) != null)
{
channelsets.Add(quantSetMod);
}
}
}
else if ((quantSetMod = mod as QuantitationChannelSet) != null)
{
channelsets.Add(quantSetMod);
}
foreach (QuantitationChannelSet channelset in channelsets)
{
sets.Add(channelset);
foreach (IQuantitationChannel channel in channelset.GetChannels())
{
if (locations.TryGetValue(channel, out residues))
{
residues.Add(i);
}
else
{
residues = new HashSet<int>() { i };
locations.Add(channel, residues);
}
}
}
}
}
if (sets.Count == 0)
{
yield return new Peptide(peptide, true);
}
else if (sets.Count == 1)
{
foreach (QuantitationChannelSet set in sets)
{
foreach (IQuantitationChannel channel in set.GetChannels())
{
Peptide toReturn = new Peptide(peptide, true);
foreach (int residue in locations[channel])
{
toReturn.SetModification(channel, residue);
}
yield return toReturn;
}
}
}
else
{
List<HashSet<IQuantitationChannel>> quantChannels = new List<HashSet<IQuantitationChannel>>();
GetUniquePeptides_helper(sets.ToList(), 0, new HashSet<IQuantitationChannel>(), quantChannels);
foreach (HashSet<IQuantitationChannel> channelset in quantChannels)
{
Peptide toReturn = new Peptide(peptide, true);
Dictionary<int, IMass> modsToAdd = new Dictionary<int, IMass>();
IMass modToAdd;
foreach (IQuantitationChannel channel in channelset)
{
foreach (int residue in locations[channel])
{
if (modsToAdd.TryGetValue(residue, out modToAdd))
{
ModificationCollection col = new ModificationCollection(channel, modToAdd);
col.Add(channel);
col.Add(modToAdd);
modsToAdd[residue] = col;
}
else
{
modsToAdd.Add(residue, channel);
}
}
}
foreach (KeyValuePair<int, IMass> kvp in modsToAdd)
{
toReturn.SetModification(kvp.Value, kvp.Key);
}
yield return toReturn;
}
}
yield break;
}
private void Control_EndMove(HtmlDesignMovableControl c)
{
IModification m;
if (_selectionList.Count == 1)
{
HtmlDesignMovableControl o = _selectionList[0].Owner;
Point previousLocation = _PreviousLocations[o];
m = previousLocation != o.Control.Location ? HtmlControlModification.GetMoved(o, previousLocation) : (IModification)null;
}
else
{
var list = new ModificationCollection<HtmlControlModification>();
foreach (var bc in _selectionList)
{
HtmlDesignMovableControl o = bc.Owner;
Point previousLocation = _PreviousLocations[o];
if (previousLocation != o.Control.Location)
{
list.Add(HtmlControlModification.GetMoved(o, previousLocation));
}
}
if (list.Count == 1)
{
m = list[0];
}
else
{
m = list.Count > 0 ? list : null;
}
}
if(m != null)
{
HtmlPage.AddUndoOperation(m);
UpdateUndoRedoState();
}
c.Control.LocationChanged -= Control_LocationChanged;
}
