/// <summary>
/// Get a chromatogram with properly sorted time values.
/// </summary>
public void ReleaseChromatogram(byte[] bytesFromDisk, out TimeIntensities timeIntensities)
{
var times = Times.ToArray(bytesFromDisk);
var intensities = Intensities.ToArray(bytesFromDisk);
var massErrors = MassErrors != null
? MassErrors.ToArray(bytesFromDisk)
: null;
var scanIds = Scans != null
? Scans.ToArray(bytesFromDisk)
: null;
// Make sure times and intensities match in length.
if (times.Length != intensities.Length)
{
throw new InvalidDataException(
string.Format(Resources.ChromCollected_ChromCollected_Times__0__and_intensities__1__disagree_in_point_count,
times.Length, intensities.Length));
}
if (massErrors != null && massErrors.Length != intensities.Length)
{
throw new InvalidDataException(
string.Format(Resources.ChromCollector_ReleaseChromatogram_Intensities___0___and_mass_errors___1___disagree_in_point_count_,
intensities.Length, massErrors.Length));
}
timeIntensities = new TimeIntensities(times, intensities, massErrors, scanIds);
// Release memory.
Times = null;
Intensities = null;
MassErrors = null;
Scans = null;
}
/// <summary>
/// Get a chromatogram with properly sorted time values.
/// </summary>
public void ReleaseChromatogram(byte[] bytesFromDisk, out float[] times, out float[] intensities, out float[] massErrors, out int[] scanIds)
{
times = Times.ToArray(bytesFromDisk);
intensities = Intensities.ToArray(bytesFromDisk);
massErrors = MassErrors != null
? MassErrors.ToArray(bytesFromDisk)
: null;
scanIds = Scans != null
? Scans.ToArray(bytesFromDisk)
: null;
// Release memory.
Times = null;
Intensities = null;
MassErrors = null;
Scans = null;
// Make sure times and intensities match in length.
if (times.Length != intensities.Length)
{
throw new InvalidDataException(
string.Format(Resources.ChromCollected_ChromCollected_Times__0__and_intensities__1__disagree_in_point_count,
times.Length, intensities.Length));
}
}
/// <summary>
/// Fill a number of intensity and mass error values for the given chromatogram with zeroes.
/// </summary>
public void FillZeroes(int chromatogramIndex, int count, BlockWriter writer)
{
if (MassErrors != null)
{
MassErrors.FillZeroes(chromatogramIndex, count, writer);
}
Intensities.FillZeroes(chromatogramIndex, count, writer);
}
/// <summary>
/// Add intensity and mass error (if needed) to the given chromatogram.
/// </summary>
public void AddPoint(int chromatogramIndex, float intensity, float?massError, BlockWriter writer)
{
if (MassErrors != null)
{
// ReSharper disable once PossibleInvalidOperationException
MassErrors.Add(chromatogramIndex, massError.Value, writer); // If massError is required, this won't be null (and if it is, we want to hear about it)
}
Intensities.Add(chromatogramIndex, intensity, writer);
}
/// <summary>
/// Add a mass error to the given chromatogram.
/// </summary>
public void AddMassError(int chromatogramIndex, float massError, BlockWriter writer)
{
MassErrors.Add(chromatogramIndex, massError, writer);
}
