public DefineAnnotationDlg(IEnumerable <AnnotationDef> existing)
{
InitializeComponent();
Icon = Resources.Skyline;
checkedListBoxAppliesTo.Items.Clear();
comboAppliesTo.Items.Clear();
foreach (var annotationTarget in new[]
{
AnnotationDef.AnnotationTarget.protein,
AnnotationDef.AnnotationTarget.peptide,
AnnotationDef.AnnotationTarget.precursor,
AnnotationDef.AnnotationTarget.transition,
AnnotationDef.AnnotationTarget.replicate,
AnnotationDef.AnnotationTarget.precursor_result,
AnnotationDef.AnnotationTarget.transition_result,
})
{
var item = new AnnotationTargetItem(annotationTarget, ModeUI);
checkedListBoxAppliesTo.Items.Add(item);
comboAppliesTo.Items.Add(item);
}
comboType.Items.AddRange(ListPropertyType.ListPropertyTypes().ToArray());
comboType.SelectedIndex = 0;
ComboHelper.AutoSizeDropDown(comboType);
_existing = existing;
_dataSchema = BrowsingDataSchema.GetBrowsingDataSchema();
availableFieldsTree1.RootColumn = NullRootColumn;
}
protected override void DoTest()
{
Assert.AreEqual(0, SkylineWindow.Document.Settings.DataSettings.Lists.Count);
var documentSettingsDlg = ShowDialog <DocumentSettingsDlg>(SkylineWindow.ShowDocumentSettingsDialog);
var listDesigner = ShowDialog <ListDesigner>(documentSettingsDlg.AddList);
RunUI(() =>
{
listDesigner.ListName = "Planets";
});
SetCellValue(listDesigner.ListPropertiesGrid, 0, 0, "Name");
SetCellValue(listDesigner.ListPropertiesGrid, 1, 0, "Symbol");
SetCellValue(listDesigner.ListPropertiesGrid, 2, 0, "Distance");
SetCellValue(listDesigner.ListPropertiesGrid, 2, 1, ListPropertyType.GetAnnotationTypeName(AnnotationDef.AnnotationType.number));
SetCellValue(listDesigner.ListPropertiesGrid, 3, 0, "Rings");
SetCellValue(listDesigner.ListPropertiesGrid, 3, 1, ListPropertyType.GetAnnotationTypeName(AnnotationDef.AnnotationType.true_false));
RunUI(() =>
{
listDesigner.IdProperty = "Name";
});
OkDialog(listDesigner, listDesigner.OkDialog);
OkDialog(documentSettingsDlg, documentSettingsDlg.OkDialog);
RunUI(() => SkylineWindow.ShowList("Planets"));
var listGridForm = FindOpenForm <ListGridForm>();
WaitForConditionUI(() => listGridForm.IsComplete);
SetCellAddress(listGridForm.DataGridView, 0, 0);
SetClipboardText(string.Join(TextUtil.SEPARATOR_TSV_STR, "Earth", "\u2641", 1.00000011, false));
RunUI(listGridForm.DataGridView.SendPaste);
SetCellAddress(listGridForm.DataGridView, 0, 0);
WaitForConditionUI(() => listGridForm.IsComplete);
var listData = SkylineWindow.Document.Settings.DataSettings.Lists.First();
Assert.AreEqual(1, listData.RowCount);
SetClipboardText(TextUtil.LineSeparate(
string.Join(TextUtil.SEPARATOR_TSV_STR, "Mercury", "\u263F", 0.38709893, false),
string.Join(TextUtil.SEPARATOR_TSV_STR, "Venus", "\u2640", 0.72333199, false),
string.Join(TextUtil.SEPARATOR_TSV_STR, "Mars", "\u2642", 1.52366231, false),
string.Join(TextUtil.SEPARATOR_TSV_STR, "Jupiter", "\u2643", 5.20336301, true),
string.Join(TextUtil.SEPARATOR_TSV_STR, "Saturn", "\u2644", 9.53707032, true),
string.Join(TextUtil.SEPARATOR_TSV_STR, "Uranus", "\u2645", 19.19126393, true),
string.Join(TextUtil.SEPARATOR_TSV_STR, "Neptune", "\u2646", 30.06896348, true),
string.Join(TextUtil.SEPARATOR_TSV_STR, "Pluto", "\u2647", 39.482, false)
));
SetCellAddress(listGridForm.DataGridView, 1, 0);
RunUI(listGridForm.DataGridView.SendPaste);
SetCellAddress(listGridForm.DataGridView, 0, 0);
listData = SkylineWindow.Document.Settings.DataSettings.Lists.First();
Assert.AreEqual(9, listData.RowCount);
SetCellAddress(listGridForm.DataGridView, 8, 0);
var alertDlg = ShowDialog <AlertDlg>(listGridForm.DataboundGridControl.NavBar.ViewContext.Delete);
OkDialog(alertDlg, alertDlg.ClickOk);
SetCellAddress(listGridForm.DataGridView, 0, 0);
listData = SkylineWindow.Document.Settings.DataSettings.Lists.First();
Assert.AreEqual(8, listData.RowCount);
OkDialog(listGridForm, listGridForm.Close);
AssertEx.Serializable(SkylineWindow.Document);
}
private void SetListDef(ListDef listDef)
{
tbxListName.Text = listDef.Name;
if (!string.IsNullOrEmpty(listDef.Name))
{
tbxListName.ReadOnly = true;
}
foreach (var property in listDef.Properties)
{
_listProperties.Add(new ListProperty(property));
}
colPropertyType.Items.Clear();
foreach (var propertyType in ListPropertyType.ListPropertyTypes(_existing))
{
colPropertyType.Items.Add(propertyType);
}
PopulatePropertyDropdown(comboIdProperty, listDef.IdProperty);
PopulatePropertyDropdown(comboDisplayProperty, listDef.DisplayProperty);
}
public DefineAnnotationDlg(IEnumerable <AnnotationDef> existing)
{
InitializeComponent();
Icon = Resources.Skyline;
checkedListBoxAppliesTo.Items.Clear();
foreach (var annotationTarget in new[]
{
AnnotationDef.AnnotationTarget.protein,
AnnotationDef.AnnotationTarget.peptide,
AnnotationDef.AnnotationTarget.precursor,
AnnotationDef.AnnotationTarget.transition,
AnnotationDef.AnnotationTarget.replicate,
AnnotationDef.AnnotationTarget.precursor_result,
AnnotationDef.AnnotationTarget.transition_result,
})
{
checkedListBoxAppliesTo.Items.Add(new AnnotationTargetItem(annotationTarget, GetModeUIHelper().ModeUI));
}
comboType.Items.AddRange(ListPropertyType.ListPropertyTypes().ToArray());
comboType.SelectedIndex = 0;
ComboHelper.AutoSizeDropDown(comboType);
_existing = existing;
}
protected override void DoTest()
{
const string listName = "MyList";
var listDesigner = ShowDialog <ListDesigner>(SkylineWindow.AddListDefinition);
RunUI(() => listDesigner.ListName = listName);
SetCellValue(listDesigner.ListPropertiesGrid, 0, 0, "Name");
SetCellValue(listDesigner.ListPropertiesGrid, 1, 0, "X");
SetCellValue(listDesigner.ListPropertiesGrid, 1, 1, ListPropertyType.GetAnnotationTypeName(AnnotationDef.AnnotationType.number));
SetCellValue(listDesigner.ListPropertiesGrid, 2, 0, "Y");
SetCellValue(listDesigner.ListPropertiesGrid, 2, 1, ListPropertyType.GetAnnotationTypeName(AnnotationDef.AnnotationType.number));
RunUI(() => listDesigner.ListPropertiesGrid.CurrentCell = listDesigner.ListPropertiesGrid.Rows[0].Cells[0]);
OkDialog(listDesigner, listDesigner.OkDialog);
RunUI(() => SkylineWindow.ShowList(listName));
var listGrid = FindOpenForm <ListGridForm>();
WaitForCondition(() => listGrid.IsComplete);
// Add some values to the "Name" and "X" columns
SetClipboardText(TextUtil.LineSeparate("A\t-4", "B\t2", "C\t0", "D\t3", "E\t-3"));
RunUI(() =>
{
listGrid.DataGridView.CurrentCell = listGrid.DataGridView.Rows[0].Cells[0];
listGrid.DataGridView.SendPaste();
listGrid.DataGridView.CurrentCell = listGrid.DataGridView.Rows[0].Cells[0];
});
WaitForCondition(() => listGrid.IsComplete);
Assert.AreEqual("ABCDE", GetNameValues(listGrid.DataGridView));
// Press the "Cluster" button and see that the order changes
RunUI(() => listGrid.DataboundGridControl.NavBar.ClusterSplitButton.PerformButtonClick());
WaitForCondition(() => listGrid.IsComplete);
Assert.AreEqual("AECBD", GetNameValues(listGrid.DataGridView));
// Press the "Cluster" button again and the order goes back to the original
RunUI(() => listGrid.DataboundGridControl.NavBar.ClusterSplitButton.PerformButtonClick());
WaitForCondition(() => listGrid.IsComplete);
Assert.AreEqual("ABCDE", GetNameValues(listGrid.DataGridView));
// Add some numbers to the "Y" column
SetClipboardText(TextUtil.LineSeparate("1", "1", "0", "3", "3"));
RunUI(() =>
{
listGrid.DataGridView.CurrentCell = listGrid.DataGridView.Rows[0].Cells[2];
listGrid.DataGridView.SendPaste();
listGrid.DataGridView.CurrentCell = listGrid.DataGridView.Rows[0].Cells[0];
});
// Press the Cluster button
RunUI(() => listGrid.DataboundGridControl.NavBar.ClusterSplitButton.PerformButtonClick());
WaitForCondition(() => listGrid.IsComplete);
Assert.AreEqual("BDCAE", GetNameValues(listGrid.DataGridView));
// set to city block distance metric, which will change the clustering of the items
var clusteringEditor = ShowDialog <ClusteringEditor>(listGrid.NavBar.ShowClusteringEditor);
RunUI(() =>
{
Assert.AreEqual(ClusterMetricType.EUCLIDEAN, clusteringEditor.DistanceMetric);
clusteringEditor.DistanceMetric = ClusterMetricType.MANHATTAN;
});
OkDialog(clusteringEditor, () => clusteringEditor.DialogResult = DialogResult.OK);
WaitForCondition(() => listGrid.IsComplete);
Assert.AreEqual("AEDBC", GetNameValues(listGrid.DataGridView));
const string reportName = "ListClusteringReport";
RunDlg <ViewEditor>(listGrid.NavBar.CustomizeView, viewEditor =>
{
viewEditor.ViewName = reportName;
viewEditor.OkDialog();
});
WaitForCondition(() => listGrid.IsComplete);
Assert.AreEqual("AEDBC", GetNameValues(listGrid.DataGridView));
RunDlg <NameLayoutForm>(listGrid.NavBar.RememberCurrentLayout, nameLayoutForm =>
{
nameLayoutForm.LayoutName = "MyLayout";
nameLayoutForm.OkDialog();
});
RunDlg <DocumentSettingsDlg>(SkylineWindow.ShowDocumentSettingsDialog, documentSettingsDlg =>
{
documentSettingsDlg.SelectTab(DocumentSettingsDlg.TABS.reports);
documentSettingsDlg.ChooseViewsControl.CheckedViews =
new[] { PersistedViews.MainGroup.Id.ViewName(reportName) };
documentSettingsDlg.OkDialog();
});
RunUI(() => SkylineWindow.SaveDocument(Path.Combine(TestContext.TestDir, "ListClusteringTest.sky")));
AssertEx.Serializable(SkylineWindow.Document);
OkDialog(listGrid, listGrid.Close);
}
