public RParentChild( LinksDataSet dsLinks, LinksDataSet.tblRelatedStructureRow drLeft )
{
//ImportDataSet dsImport, , LinksDataSet.tblRelatedStructureRow drRight
if ( dsLinks == null ) throw new ArgumentNullException("dsLinks");
if ( drLeft == null ) throw new ArgumentNullException("drLeft");
if ( dsLinks.tblSubject.Count == 0 ) throw new InvalidOperationException("tblSubject must NOT be empty before assigning R values from it.");
_dsLinks = dsLinks;
_drLeft = drLeft;
_idRelatedLeft = _drLeft.ID;
_drBare1 = _dsLinks.tblSubject.FindBySubjectTag(drLeft.SubjectTag_S1);
_drBare2 = _dsLinks.tblSubject.FindBySubjectTag(drLeft.SubjectTag_S2);
Trace.Assert(_drBare1.Generation != _drBare2.Generation, "The generation should not be the same for a parent-child relationship.");
_multipleBirth = MultipleBirth.No;
_isMZ = Tristate.No;
//For IAssignPass1
_rImplicitPass1 = RCoefficients.ParentChild;
_rImplicit2004 = RCoefficients.ParentChild;
_rExplicitOldestSibVersion = null;
_rExplicitYoungestSibVersion = null;
_rExplicitPass1 = RCoefficients.ParentChild;
_rPass1 = RCoefficients.ParentChild;
//For IAssignPass2
_rImplicit = RCoefficients.ParentChild;
_rImplicitSubject = RCoefficients.ParentChild;
_rImplicitMother = RCoefficients.ParentChild;
_rExplicit = RCoefficients.ParentChild;
_rFull = RCoefficients.ParentChild;
_rPeek = RCoefficients.ParentChild;
}
public RGen2Cousins( LinksDataSet dsLinks, LinksDataSet.tblRelatedStructureRow drLeft )
{
//ImportDataSet dsImport, , LinksDataSet.tblRelatedStructureRow drRight
if ( dsLinks == null ) throw new ArgumentNullException("dsLinks");
if ( drLeft == null ) throw new ArgumentNullException("drLeft");
if ( dsLinks.tblSubject.Count == 0 ) throw new InvalidOperationException("tblSubject must NOT be empty before assigning R values from it.");
_dsLinks = dsLinks;
_idRelatedLeft = drLeft.ID;
_drBare1 = _dsLinks.tblSubject.FindBySubjectTag(drLeft.SubjectTag_S1);
_drBare2 = _dsLinks.tblSubject.FindBySubjectTag(drLeft.SubjectTag_S2);
Trace.Assert(_drBare1.Generation == (byte)Generation.Gen2, "The generation should be Gen2.");
Trace.Assert(_drBare2.Generation == (byte)Generation.Gen2, "The generation should be Gen2.");
_multipleBirth = MultipleBirth.No;
_isMZ = Tristate.No;
LinksDataSet.tblRelatedValuesRow drValuesOfGen1Housemates = Gen1HousematesValues(_drBare1.SubjectTag, _drBare2.SubjectTag);//RelatedValues.Retrieve(_dsLinks, _path,
//For IAssignPass1
if ( drValuesOfGen1Housemates.IsRImplicitPass1Null() ) _rImplicitPass1 = null;
else _rImplicitPass1 = (float)(RCoefficients.ParentChild * RCoefficients.ParentChild * drValuesOfGen1Housemates.RImplicitPass1);
if ( drValuesOfGen1Housemates.IsRImplicit2004Null() ) _rImplicit2004 = null;
else _rImplicit2004 = (float)(RCoefficients.ParentChild * RCoefficients.ParentChild * drValuesOfGen1Housemates.RImplicit2004);
_rExplicitOldestSibVersion = null;
_rExplicitYoungestSibVersion = null;
if ( drValuesOfGen1Housemates.IsRExplicitPass1Null() ) _rExplicitPass1 = null;
else _rExplicitPass1 = (float)(RCoefficients.ParentChild * RCoefficients.ParentChild * drValuesOfGen1Housemates.RExplicitPass1);
if ( drValuesOfGen1Housemates.IsRPass1Null() ) _rPass1 = null;
else _rPass1 = (float)(RCoefficients.ParentChild * RCoefficients.ParentChild * drValuesOfGen1Housemates.RPass1); ;
//For IAssignPass2
if ( drValuesOfGen1Housemates.IsRImplicitNull() ) _rImplicit = null;
else _rImplicit = (float)(RCoefficients.ParentChild * RCoefficients.ParentChild * drValuesOfGen1Housemates.RImplicit);
if ( drValuesOfGen1Housemates.IsRImplicitSubjectNull() ) _rImplicitSubject = null;
else _rImplicitSubject = (float)(RCoefficients.ParentChild * RCoefficients.ParentChild * drValuesOfGen1Housemates.RImplicitSubject);
if ( drValuesOfGen1Housemates.IsRImplicitMotherNull() ) _rImplicitMother = null;
else _rImplicitMother = (float)(RCoefficients.ParentChild * RCoefficients.ParentChild * drValuesOfGen1Housemates.RImplicitMother);
if ( drValuesOfGen1Housemates.IsRExplicitNull() ) _rExplicit = null;
else _rExplicit = (float)(RCoefficients.ParentChild * RCoefficients.ParentChild * drValuesOfGen1Housemates.RExplicit);
if ( drValuesOfGen1Housemates.IsRNull() ) _r= null;
else _r= (float)(RCoefficients.ParentChild * RCoefficients.ParentChild * drValuesOfGen1Housemates.R);
if ( drValuesOfGen1Housemates.IsRFullNull() ) _rFull = null;
else _rFull = (float)(RCoefficients.ParentChild * RCoefficients.ParentChild * drValuesOfGen1Housemates.RFull);
if ( drValuesOfGen1Housemates.IsRPeekNull() ) _rPeek = null;
else _rPeek = (float)(RCoefficients.ParentChild * RCoefficients.ParentChild * drValuesOfGen1Housemates.RPeek);
}
public RGen2Pass1( ImportDataSet dsImport, LinksDataSet dsLinks, LinksDataSet.tblRelatedStructureRow drLeft, LinksDataSet.tblRelatedStructureRow drRight )
{
if ( dsImport == null ) throw new ArgumentNullException("dsImport");
if ( dsLinks == null ) throw new ArgumentNullException("dsLinks");
if ( drLeft == null ) throw new ArgumentNullException("drLeft");
if ( drRight == null ) throw new ArgumentNullException("drRight");
if ( dsImport.tblLinks2004Gen2.Count == 0 ) throw new InvalidOperationException("tblLinks2004Gen2 must NOT be empty before assigning R values from it.");
if ( dsLinks.tblMzManual.Count == 0 ) throw new InvalidOperationException("tblMzManual must NOT be empty before assigning R values from it.");
if ( dsLinks.tblSubject.Count == 0 ) throw new InvalidOperationException("tblSubject must NOT be empty before assigning R values from it.");
if ( dsLinks.tblSubjectDetails.Count == 0 ) throw new InvalidOperationException("tblSubjectDetails must NOT be empty before assigning R values from it.");
if ( dsLinks.tblMarkerGen2.Count == 0 ) throw new InvalidOperationException("tblMarkerGen2 must NOT be empty before assigning R values from it.");
_dsImport = dsImport;
_dsLinks = dsLinks;
_drLeft = drLeft;
_drRight = drRight;
_idRelatedLeft = _drLeft.ID;
_idRelatedRight = _drRight.ID;
_drBare1 = _dsLinks.tblSubject.FindBySubjectTag(drLeft.SubjectTag_S1);
_drBare2 = _dsLinks.tblSubject.FindBySubjectTag(drLeft.SubjectTag_S2);
_drSubjectDetails1 = _dsLinks.tblSubjectDetails.FindBySubjectTag(drLeft.SubjectTag_S1);
_drSubjectDetails2 = _dsLinks.tblSubjectDetails.FindBySubjectTag(drLeft.SubjectTag_S2);
_extendedID = _drLeft.tblSubjectRowByFK_tblRelatedStructure_tblSubject_Subject1.ExtendedID;
if ( _drSubjectDetails1.BirthOrderInNls <= _drSubjectDetails2.BirthOrderInNls ) {//This is the way it usually is. Recall twins were assigned tied birth orders
_idRelatedOlderAboutYounger = _idRelatedLeft;
_idRelatedYoungerAboutOlder = _idRelatedRight;
}
else if ( _drSubjectDetails1.BirthOrderInNls > _drSubjectDetails2.BirthOrderInNls ) {
_idRelatedOlderAboutYounger = _idRelatedRight;
_idRelatedYoungerAboutOlder = _idRelatedLeft;
}
_dtMarkersGen2 = MarkerGen2.PairRelevantMarkerRows(_idRelatedLeft, _idRelatedRight, _dsLinks, _extendedID);
LinksDataSet.tblMzManualRow drMzManual = Retrieve.MzManualRecord(_drBare1, _drBare2, _dsLinks);
if ( drMzManual == null ) {
_multipleBirth = MultipleBirth.No;
_isMZ = Tristate.No;
}
else {
_multipleBirth = (MultipleBirth)drMzManual.MultipleBirthIfSameSex;
_isMZ = (Tristate)drMzManual.IsMz;
}
MarkerEvidence babyDaddyDeathDate = MarkerGen2.RetrieveBiodadMarkerFromGen1(_idRelatedOlderAboutYounger, MarkerType.BabyDaddyDeathDate, _dtMarkersGen2);
MarkerEvidence babyDaddyAlive = MarkerGen2.RetrieveBiodadMarkerFromGen1(_idRelatedOlderAboutYounger, MarkerType.BabyDaddyAlive, _dtMarkersGen2);
MarkerEvidence babyDaddyInHH = MarkerGen2.RetrieveBiodadMarkerFromGen1(_idRelatedOlderAboutYounger, MarkerType.BabyDaddyInHH, _dtMarkersGen2);
MarkerEvidence babyDaddyLeftHHDate = MarkerGen2.RetrieveBiodadMarkerFromGen1(_idRelatedOlderAboutYounger, MarkerType.BabyDaddyLeftHHDate, _dtMarkersGen2);
MarkerEvidence babyDaddyDistanceFromHH = MarkerGen2.RetrieveBiodadMarkerFromGen1(_idRelatedOlderAboutYounger, MarkerType.BabyDaddyDistanceFromHH, _dtMarkersGen2);
MarkerEvidence babyDaddyAsthma = MarkerGen2.RetrieveBiodadMarkerFromGen1(_idRelatedOlderAboutYounger, MarkerType.BabyDaddyAsthma, _dtMarkersGen2);
_rImplicitPass1 = CalculateRImplicitPass1(babyDaddyDeathDate, babyDaddyAlive, babyDaddyInHH, babyDaddyLeftHHDate, babyDaddyDistanceFromHH, babyDaddyAsthma);
//_rImplicit not set;
_rImplicit2004 = RetrieveRImplicit2004();
_rExplicitOldestSibVersion = CalculateRExplicitOldestSibVersion();
_rExplicitYoungestSibVersion = CalculateRExplicitYoungestSibVersion();
_rExplicitPass1 = CalculateRExplicitPass1(_isMZ, _multipleBirth);
//_rExplicit not set;
_rPass1 = CalculateRPass1();
//_r not set;
//_rPeek not set;
}
