public void deserializerGetResultsTest3()
{
ResultCollection results;
IsosResultDeSerializer deserializer = new IsosResultDeSerializer(deserializerUIMFTestFile1);
int counter = 0;
do
{
counter++;
results = deserializer.GetNextSetOfResults();
if (results != null)
{
StringBuilder sb = new StringBuilder();
foreach (IsosResult result in results.ResultList)
{
UIMFIsosResult uimfResult = (UIMFIsosResult)result;
sb.Append(uimfResult.FrameSet.PrimaryFrame);
sb.Append("\t");
sb.Append(uimfResult.ScanSet.PrimaryScanNumber);
sb.Append("\t");
sb.Append(uimfResult.IsotopicProfile.GetMZ());
sb.Append("\t");
sb.Append(uimfResult.IsotopicProfile.GetAbundance());
sb.Append("\n");
}
Console.WriteLine("----------------------------------------------------------------------");
Console.Write(sb.ToString());
}
} while (results != null);
Assert.AreEqual(8, counter);
}
public void serializeUIMFDataTest1()
{
Run run = new UIMFRun(uimfFilepath2);
List <Run> runCollection = new List <Run>();
runCollection.Add(run);
int startFrame = 1200;
int stopFrame = 1205;
int numFramesSummed = 3;
int numScansSummed = 3;
FrameSetCollectionCreator framesetCreator = new FrameSetCollectionCreator(run, startFrame, stopFrame, numFramesSummed, 1);
framesetCreator.Create();
ScanSetCollectionCreator scanSetCreator = new ScanSetCollectionCreator(run, numScansSummed, 1);
scanSetCreator.Create();
Task msgen = new UIMF_MSGenerator();
DeconToolsV2.Peaks.clsPeakProcessorParameters detectorParams = new DeconToolsV2.Peaks.clsPeakProcessorParameters();
detectorParams.PeakBackgroundRatio = 3;
detectorParams.PeakFitType = DeconToolsV2.Peaks.PEAK_FIT_TYPE.QUADRATIC;
detectorParams.SignalToNoiseThreshold = 3;
detectorParams.ThresholdedData = true;
Task peakdetector = new DeconToolsPeakDetector(detectorParams);
Task decon = new RapidDeconvolutor();
TaskCollection taskcollection = new TaskCollection();
taskcollection.TaskList.Add(msgen);
taskcollection.TaskList.Add(peakdetector);
taskcollection.TaskList.Add(decon);
TaskController taskcontroller = new UIMF_TaskController(taskcollection);
taskcontroller.IsosResultThresholdNum = 50;
taskcontroller.Execute(runCollection);
ResultCollection results;
IsosResultDeSerializer deserializer = new IsosResultDeSerializer(run.Filename + "_tmp.bin");
int counter = 0;
do
{
counter++;
results = deserializer.GetNextSetOfResults();
} while (results != null);
Assert.AreEqual(8, counter);
}
public void deserializerGetResultsTest2()
{
ResultCollection results;
IsosResultDeSerializer deserializer = new IsosResultDeSerializer(deserializerTestFile1); int counter = 0;
do
{
counter++;
results = deserializer.GetNextSetOfResults();
} while (results != null);
Assert.AreEqual(3, counter);
}
public void deserializerGetResultsTest1()
{
IsosResultDeSerializer deserializer = new IsosResultDeSerializer(deserializerTestFile1);
ResultCollection results1 = deserializer.GetNextSetOfResults();
Assert.AreEqual(10017, results1.ResultList.Count);
Assert.AreEqual(612.313809325556, (decimal)results1.ResultList[1000].IsotopicProfile.GetMZ());
Assert.AreEqual(4094, results1.ResultList[1000].ScanSet.PrimaryScanNumber);
ResultCollection results2 = deserializer.GetNextSetOfResults();
Assert.AreEqual(1130, results2.ResultList.Count);
Assert.AreEqual(558.615648653453, (decimal)results2.ResultList[1000].IsotopicProfile.GetMZ());
Assert.AreEqual(4988, results2.ResultList[1000].ScanSet.PrimaryScanNumber);
ResultCollection results3 = deserializer.GetNextSetOfResults();
Assert.IsNull(results3);
}
