public static string GetDisplayName(this IonType ionType)
{
if (ionType == IonType.B2 || ionType == IonType.Y2)
{
return(ionType.ToString().Substring(0, 1).ToLower());
}
else
{
return(ionType.ToString().ToLower());
}
}
public override string ToString()
{
if (IsPrecursor())
{
return(Resources.Transition_ToString_precursor + GetChargeIndicator(Adduct) +
GetMassIndexText(MassIndex));
}
if (IsCustom())
{
var text = CustomIon.ToString();
// Was there enough information to generate a string more distinctive that just "Ion"?
if (String.IsNullOrEmpty(CustomIon.Name) &&
String.IsNullOrEmpty(CustomIon.NeutralFormula))
{
// No, add mz and charge to whatever generic text was used to describe it
var mz = Adduct.MzFromNeutralMass(CustomIon.MonoisotopicMass);
return(string.Format(@"{0} {1:F04}{2}",
text, mz, GetChargeIndicator(Adduct)));
}
return(text);
}
return(string.Format(@"{0} - {1}{2}{3}{4}",
AA,
IonType.ToString().ToLowerInvariant(),
Ordinal,
GetDecoyText(DecoyMassShift),
GetChargeIndicator(Adduct)));
}
public void Output(List<IonTypePeak> pkl, IonType ionType)
{
Console.WriteLine("Assert.AreEqual({0}, pkl.Count);", pkl.Count);
for (int i = 0; i < pkl.Count; i++)
{
Console.WriteLine(MyConvert.Format("AssertPeak(pkl[{0}], IonType.{1}, {2}, {3:0.0000});", i, ionType.ToString(), i + 1, pkl[i].Mz));
}
}
public string GetFragmentIonName(CultureInfo cultureInfo, double?tolerance = null)
{
if (IsCustom() && !IsPrecursor())
{
return(CustomIon.ToString(tolerance));
}
string ionName = ReferenceEquals(cultureInfo, CultureInfo.InvariantCulture)
? IonType.ToString() : IonType.GetLocalizedString();
if (!IsPrecursor())
{
ionName += Ordinal;
}
return(ionName);
}
public void Output(List <IonTypePeak> pkl, IonType ionType)
{
Console.WriteLine("Assert.AreEqual({0}, pkl.Count);", pkl.Count);
for (int i = 0; i < pkl.Count; i++)
{
Console.WriteLine(MyConvert.Format("AssertPeak(pkl[{0}], IonType.{1}, {2}, {3:0.0000});", i, ionType.ToString(), i + 1, pkl[i].Mz));
}
}
