public void Save(ISession session)
{
var dbPeptideFileAnalysis = session.Get <DbPeptideFileAnalysis>(PeptideFileAnalysis.Id);
DeleteResults(session, dbPeptideFileAnalysis);
dbPeptideFileAnalysis.PrecursorEnrichment = PrecursorEnrichment;
dbPeptideFileAnalysis.PrecursorEnrichmentFormula = PrecursorEnrichmentFormula == null ? null : PrecursorEnrichmentFormula.ToString();
dbPeptideFileAnalysis.TracerPercent = TracerPercent;
dbPeptideFileAnalysis.Turnover = Turnover;
dbPeptideFileAnalysis.TurnoverScore = TurnoverScore;
dbPeptideFileAnalysis.DeconvolutionScore = DeconvolutionScore;
dbPeptideFileAnalysis.IntegrationNote = IntegrationNote.ToString();
dbPeptideFileAnalysis.PeakCount = Peaks.Count;
session.Update(dbPeptideFileAnalysis);
var tracerFormulae = PeptideFileAnalysis.TurnoverCalculator.ListTracerFormulas();
for (int i = 0; i < tracerFormulae.Count; i++)
{
var peak = _peaks[tracerFormulae[i]];
var dbPeak = new DbPeak
{
PeptideFileAnalysis = dbPeptideFileAnalysis,
PeakIndex = i,
Area = peak.Area,
StartTime = peak.StartTime,
EndTime = peak.EndTime,
};
session.Save(dbPeak);
}
}
public AcceptanceCriteriaForm(Workspace workspace) : base(workspace)
{
InitializeComponent();
checkedListBoxAcceptableIntegrationNotes.Items.AddRange(IntegrationNote.Values().Cast <object>().ToArray());
AcceptSamplesWithoutMs2Id = workspace.GetAcceptSamplesWithoutMs2Id();
MinDeconvolutionScore = workspace.GetAcceptMinDeconvolutionScore();
MinAuc = workspace.GetAcceptMinAreaUnderChromatogramCurve();
IntegrationNotes = workspace.GetAcceptIntegrationNotes();
MinTurnoverScore = workspace.GetAcceptMinTurnoverScore();
}
public PeakSet(DbPeptideFileAnalysis dbPeptideFileAnalysis, IEnumerable <Peak> peaks) : this()
{
TracerPercent = dbPeptideFileAnalysis.TracerPercent;
DeconvolutionScore = dbPeptideFileAnalysis.DeconvolutionScore;
PrecursorEnrichment = dbPeptideFileAnalysis.PrecursorEnrichment;
if (dbPeptideFileAnalysis.PrecursorEnrichmentFormula != null)
{
PrecursorEnrichmentFormula = TracerPercentFormula.Parse(dbPeptideFileAnalysis.PrecursorEnrichmentFormula);
}
Turnover = dbPeptideFileAnalysis.Turnover;
TurnoverScore = dbPeptideFileAnalysis.TurnoverScore;
IntegrationNote = IntegrationNote.Parse(dbPeptideFileAnalysis.IntegrationNote);
if (peaks != null)
{
_peaks = ImmutableList.ValueOf(peaks);
}
}
public void SetAcceptIntegrationNotes(IEnumerable <IntegrationNote> integrationNotes)
{
Settings.SetSetting(SettingEnum.accept_integration_notes, IntegrationNote.ToString(integrationNotes));
}
public IEnumerable <IntegrationNote> GetAcceptIntegrationNotes()
{
return(IntegrationNote.ParseCollection(Settings.GetSetting(SettingEnum.accept_integration_notes,
IntegrationNote.ToString(new[] { IntegrationNote.Manual, IntegrationNote.Success, }))));
}